BLASTX nr result

ID: Ephedra29_contig00002033 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00002033
         (626 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_011029674.1 PREDICTED: probable BOI-related E3 ubiquitin-prot...    43   5e-06

>XP_011029674.1 PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2
           [Populus euphratica]
          Length = 338

 Score = 42.7 bits (99), Expect(2) = 5e-06
 Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
 Frame = +1

Query: 88  QAQYSSNMRNRNVYPVENKNSVPITLFGSSNQLDYXXXXXXXXXXXXXXXXXXXXXXXXS 267
           Q Q   N+RN  +Y ++ + S  +  F  SN  D                          
Sbjct: 14  QQQQPKNLRN--LYAIDGQISPAVAYFNPSNLQDQSQHP--------------------- 50

Query: 268 PYIPQFTACNRGQQVNGASGLHGSDN--EMAWNL-LAPRRKS-REQELLEN-SQISSIDF 432
           PY+P F             G  GSD   E+ WN  L P+RK  +EQ+ LEN SQISS+DF
Sbjct: 51  PYVPPFHVVGFAPGPVPGPGNDGSDGGLELQWNYGLEPKRKRLKEQDFLENNSQISSVDF 110

Query: 433 L 435
           L
Sbjct: 111 L 111



 Score = 35.4 bits (80), Expect(2) = 5e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +3

Query: 495 AGTVSTGLRLSLDDERLNATSNISVGKSKISSVLNDDLSAEFQR 626
           A +VSTGL LSLD+ R++     S G S + S++ DD+ +E QR
Sbjct: 113 ARSVSTGLGLSLDNTRVS-----SSGDSALLSLIGDDIDSELQR 151


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