BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra29_contig00000547
         (2219 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JAT54388.1 Chloroplastic group IIA intron splicing facilitator C...   426   e-134
XP_016561487.1 PREDICTED: CRM-domain containing factor CFM2, chl...   422   e-130
XP_016561486.1 PREDICTED: CRM-domain containing factor CFM2, chl...   422   e-130
KCW52124.1 hypothetical protein EUGRSUZ_J01564 [Eucalyptus grandis]   366   e-112
XP_010032683.1 PREDICTED: CRM-domain containing factor CFM3A, ch...   366   e-111
XP_010032682.1 PREDICTED: CRM-domain containing factor CFM3A, ch...   366   e-111
KCW57417.1 hypothetical protein EUGRSUZ_H00197 [Eucalyptus grandis]   360   e-109
XP_018717089.1 PREDICTED: CRM-domain containing factor CFM3A, ch...   360   e-108
XP_010069158.1 PREDICTED: CRM-domain containing factor CFM3A, ch...   360   e-108
XP_009352661.1 PREDICTED: CRM-domain containing factor CFM3, chl...   350   e-104
XP_018502185.1 PREDICTED: CRM-domain containing factor CFM3, chl...   348   e-103
XP_016718281.1 PREDICTED: CRM-domain containing factor CFM3, chl...   339   e-101
XP_012440292.1 PREDICTED: chloroplastic group IIA intron splicin...   338   e-101
XP_012440291.1 PREDICTED: chloroplastic group IIA intron splicin...   338   e-101
XP_017637137.1 PREDICTED: CRM-domain containing factor CFM3, chl...   336   e-100
KHG01961.1 Chloroplastic group IIA intron splicing facilitator C...   335   e-100
XP_012440290.1 PREDICTED: chloroplastic group IIA intron splicin...   336   1e-99
XP_015887836.1 PREDICTED: CRM-domain containing factor CFM3A, ch...   337   1e-99
KMT11173.1 hypothetical protein BVRB_5g111010 [Beta vulgaris sub...   334   2e-99
XP_010678004.1 PREDICTED: CRM-domain containing factor CFM3, chl...   334   2e-99

>JAT54388.1 Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic, partial [Anthurium amnicola]
          Length = 822

 Score =  426 bits (1095), Expect = e-134
 Identities = 293/773 (37%), Positives = 404/773 (52%), Gaps = 106/773 (13%)
 Frame = +3

Query: 60   KPLKLQRSSTHNSTRRVCMLSIKCCETTNKPSVIQKIYSSLLSKGLI-----QHEPTAEP 224
            KPL    SS+ +S            + T   S IQ+I   L S G +     Q E  A  
Sbjct: 72   KPLLRASSSSGSSA---------AAQETVPKSAIQRIAEKLRSLGYLEEGAEQQEEDALR 122

Query: 225  PR-----SGPGTPGAIYLPDPETLIRQRVGRTLEHYGYELPSNSAQTPSEN--------- 362
             R     SG G+ G I++P P+ L R+RVG T++   +  P +    P            
Sbjct: 123  RRRPVVSSGSGSAGEIFIPTPQELPRRRVGHTIDS-SWSTPESPVPVPGSGPAISRFHEL 181

Query: 363  --EENDEWTRPPDDGT-------CISGTELKRLITIGIRLCHVLKL--GKGGVTDGFVHG 509
              E   +  R P   T        I   EL+RL ++GIRL   L+L  GK G+ +G V+ 
Sbjct: 182  RRELGMDTGRVPPTPTPPMVAELTIPAGELRRLRSLGIRLEKKLRLKVGKAGIMEGIVNS 241

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYK---- 677
            IH+RW  SE+VKI C +D  + NMKRTH I+E +TGG+++WRSGS I+LYRG +YK    
Sbjct: 242  IHERWRRSELVKITC-EDLCRMNMKRTHEILERKTGGLVIWRSGSIIILYRGANYKYPYF 300

Query: 678  -----------RPNTRSTNEDATDG----------------KPSEYFV------------ 740
                        P++ ST + ATD                 +PS   V            
Sbjct: 301  TDGNPNNKNMNNPSSESTTDMATDNEQEGSSSCLDELTSLDRPSSIQVHSSLVAGVGSLN 360

Query: 741  --------------EVDNLSNGLDSLSTDMRGSEPLSQD-DELPLPGFAYKKPLRLIHHG 875
                          E D L  GL    TD  G  PL  D D LP     Y+KP RL+  G
Sbjct: 361  KVRFQLPGEVQLGEEADRLLEGLGPRFTDWWGCHPLPVDADLLPAVVPGYRKPFRLLPFG 420

Query: 876  LFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKN 1055
               KLTD E+T LRRL   LP  FAL +  +LQ LA S+V+LW+ CEIAKIA+   A   
Sbjct: 421  FKPKLTDREMTILRRLGRPLPCHFALGRNRNLQGLALSMVRLWEKCEIAKIAIKKGAQNT 480

Query: 1056 DVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGMEKSNLENR 1235
            + E M EEL+ LTGG+L+SRDKD+IV YRGKDFLPS+ ++ + ER++     +K  LE  
Sbjct: 481  NTELMVEELQRLTGGTLLSRDKDYIVFYRGKDFLPSAVSSAIRERRSFEMCKQKHKLEE- 539

Query: 1236 AELFPSSSSSKQTENRSCIMSPEINHKMDVCMSV----------EGQEERASDTNILEDS 1385
                 SSS + + + +   +   +   +DV +S           +G + +   TN+    
Sbjct: 540  -----SSSIASRVDGK---LDASVGSTIDVRLSAVVPTSTNALQDGNQHKTISTNVNRFK 591

Query: 1386 NGSVMVEN---ELTSSVDNDEFCN-LLEPSKFSDPSAHGE---DTLTDEERFMLTKLGLR 1544
              ++ VE    +L  +++  E    LLE  + S   +  E   + +++EER+ML K+GLR
Sbjct: 592  TANIAVEEMEAKLCRALEKKEKAEKLLEELELSIGPSKAELDKEAISEEERYMLRKVGLR 651

Query: 1545 MKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVSV 1724
            MK FLLLG+RGVF G VENMHLHWKYR+LVKIISK+R  ENV K+ ++LE  SGGILV+V
Sbjct: 652  MKAFLLLGRRGVFDGTVENMHLHWKYRELVKIISKDRSFENVHKSARMLEAASGGILVAV 711

Query: 1725 ERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQ 1904
            ERV+KGYAII+YRG+ YR P+ LRPRTLL KK+ALK S++AQ+ +S   H+  L   +++
Sbjct: 712  ERVNKGYAIIVYRGKNYRRPTVLRPRTLLNKKEALKLSLEAQRCQSLKLHVLKLSSDIDK 771

Query: 1905 LREYHREDGYEKNGGMLDRKLDCLTGTEMDENTIPLKNNK-EEGYEKYSGMLD 2060
            +R   + +         D KL   T  E     + L +N     Y KY   ++
Sbjct: 772  MRHQLQNN---------DAKLVSTTDLENSSAVLELSDNSGPVEYTKYEHFIE 815


>XP_016561487.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic isoform
            X2 [Capsicum annuum]
          Length = 1038

 Score =  422 bits (1085), Expect = e-130
 Identities = 277/773 (35%), Positives = 395/773 (51%), Gaps = 90/773 (11%)
 Frame = +3

Query: 153  SVIQKIYSSLLSKGLIQHEPTAEPPRSGPG------TPGAIYLPDPETLIRQRVGRTLEH 314
            S I++I   L S G +Q     E P+S  G      +PG I++P P  L + RVG TL+ 
Sbjct: 46   SAIKRISEKLRSLGFVQEPQVQETPQSSFGPNPTVNSPGQIFVPLPAQLPKHRVGHTLDT 105

Query: 315  YGYELPSNSAQTPS------------------------ENEENDEWTRPPDDGTCISGTE 422
              +  P N    P                          N+E  +   P      +   E
Sbjct: 106  -SWSTPENPVPQPGLGESIQKFHELRDGFLKEKEKERLRNKEEKKERAPSLAELTLKAEE 164

Query: 423  LKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKRTHRII 602
            L RL TIGI +   LK+GK G+T+G V+GIH+RW  +E+VKI C +D  + NMKRTH ++
Sbjct: 165  LSRLRTIGIAIRKKLKIGKAGITEGIVNGIHERWRRTELVKITC-EDICRLNMKRTHELL 223

Query: 603  EARTGGIIVWRSGSSIVLYRGKDYKRP-------------------------------NT 689
            E +TGG+++WRSGS+I+LYRG DYK P                                 
Sbjct: 224  EKKTGGLVIWRSGSNIILYRGADYKYPYFSGSSFENNSAQDATPDLFTGAEEHMSNSSGM 283

Query: 690  RSTNEDATDGKPSEYFV---------------------EVDNLSNGLDSLSTDMRGSEPL 806
             +   DA D K S   +                     E D L  GL    TD  G EPL
Sbjct: 284  DAVKSDALDRKSSPRVIQGVGSPDRVRFELPGEAAHTEEADKLLEGLGPRFTDWWGCEPL 343

Query: 807  SQD-DELPLPGFAYKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLA 983
              D D LP     YKKP RL+ +G+  KLT+ E+T LRRL   LP  FAL +   LQ LA
Sbjct: 344  PIDADLLPAIVPGYKKPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFALGRNRKLQGLA 403

Query: 984  ASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPS 1163
            A++VKLW+ CEI K+AV       + E M EELK LTGG+L+SRD++FIV YRGKDFLPS
Sbjct: 404  AAIVKLWEKCEIVKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVFYRGKDFLPS 463

Query: 1164 SFAAVLAERKALLKGMEK-----SNLENRAELFPSSSSSKQTENRSCIMSPEINHKMDVC 1328
            + ++ + ER+  +   EK     S++ N  E   S++ S   +  +   + + + +    
Sbjct: 464  AVSSAIEERRKQIIEEEKRSGINSSVANAKERKQSATGSVSDDGHANRNNQKADLEKKKL 523

Query: 1329 MSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFCNLLEPSKFSDPSAHGEDTLTD 1508
             S+E   +R  D            +   L    + ++    LE  +    S   ++ +T+
Sbjct: 524  TSMEAAIKRTVDK-----------LTTALEKKAEAEKLLLELEEDEVPQQSDMDKEGITE 572

Query: 1509 EERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKI 1688
            EER+ML K+GLRMKPFLLLG+RGVF G VENMHLHWKYR+LVK+I+  + +E V +  ++
Sbjct: 573  EERYMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGMKNIEEVHQIARM 632

Query: 1689 LERESGGILVSVERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYD 1868
            LE ESGGILV++ERV+KGYAII+YRG+ Y  P+ LRP+TLL+K++A+K SI+AQ+ +S  
Sbjct: 633  LEAESGGILVAIERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLK 692

Query: 1869 RHIFGLRKTVEQLREYHREDGYEKNGGMLDRKLDCLTGTEMDENTIPLKNNKEEGY-EKY 2045
             H+  L + +E L+         KN  M+      +   ++ +  +P+    +      Y
Sbjct: 693  LHVLKLTQNIEALK-----SRLAKNEEMIH-----IQSPDIVDKQVPVTGLSDAARGTNY 742

Query: 2046 SGMLDRKLDCSIVPEMVEDTIP-FNNTLDFESPAPDHKTNLHLADESG*YYLS 2201
               L          ++ EDT P   N L  +S   DH +   +  +S   Y S
Sbjct: 743  QPSLASPCTSEDSEDVAEDTDPNCPNELPSDSSDTDHSSRQDIPSDSSFQYES 795


>XP_016561486.1 PREDICTED: CRM-domain containing factor CFM2, chloroplastic isoform
            X1 [Capsicum annuum]
          Length = 1045

 Score =  422 bits (1084), Expect = e-130
 Identities = 278/777 (35%), Positives = 402/777 (51%), Gaps = 94/777 (12%)
 Frame = +3

Query: 153  SVIQKIYSSLLSKGLIQHEPTAEPPRSGPG------TPGAIYLPDPETLIRQRVGRTLEH 314
            S I++I   L S G +Q     E P+S  G      +PG I++P P  L + RVG TL+ 
Sbjct: 46   SAIKRISEKLRSLGFVQEPQVQETPQSSFGPNPTVNSPGQIFVPLPAQLPKHRVGHTLDT 105

Query: 315  YGYELPSNSAQTPS------------------------ENEENDEWTRPPDDGTCISGTE 422
              +  P N    P                          N+E  +   P      +   E
Sbjct: 106  -SWSTPENPVPQPGLGESIQKFHELRDGFLKEKEKERLRNKEEKKERAPSLAELTLKAEE 164

Query: 423  LKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKRTHRII 602
            L RL TIGI +   LK+GK G+T+G V+GIH+RW  +E+VKI C +D  + NMKRTH ++
Sbjct: 165  LSRLRTIGIAIRKKLKIGKAGITEGIVNGIHERWRRTELVKITC-EDICRLNMKRTHELL 223

Query: 603  EARTGGIIVWRSGSSIVLYRGKDYKRP-------------------------------NT 689
            E +TGG+++WRSGS+I+LYRG DYK P                                 
Sbjct: 224  EKKTGGLVIWRSGSNIILYRGADYKYPYFSGSSFENNSAQDATPDLFTGAEEHMSNSSGM 283

Query: 690  RSTNEDATDGKPSEYFV---------------------EVDNLSNGLDSLSTDMRGSEPL 806
             +   DA D K S   +                     E D L  GL    TD  G EPL
Sbjct: 284  DAVKSDALDRKSSPRVIQGVGSPDRVRFELPGEAAHTEEADKLLEGLGPRFTDWWGCEPL 343

Query: 807  SQD-DELPLPGFAYKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLA 983
              D D LP     YKKP RL+ +G+  KLT+ E+T LRRL   LP  FAL +   LQ LA
Sbjct: 344  PIDADLLPAIVPGYKKPFRLLPYGVKPKLTNDEMTTLRRLGRPLPCHFALGRNRKLQGLA 403

Query: 984  ASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPS 1163
            A++VKLW+ CEI K+AV       + E M EELK LTGG+L+SRD++FIV YRGKDFLPS
Sbjct: 404  AAIVKLWEKCEIVKVAVKRGVQNTNSELMAEELKWLTGGTLLSRDREFIVFYRGKDFLPS 463

Query: 1164 SFAAVLAERKALLKGMEK-----SNLENRAELFPSSSSSKQTENRSCIMSPEINHKMDVC 1328
            + ++ + ER+  +   EK     S++ N  E   S++ S   +  +   + + + +    
Sbjct: 464  AVSSAIEERRKQIIEEEKRSGINSSVANAKERKQSATGSVSDDGHANRNNQKADLEKKKL 523

Query: 1329 MSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFCNLLEPSKFSDPSAHGEDTLTD 1508
             S+E   +R  D            +   L    + ++    LE  +    S   ++ +T+
Sbjct: 524  TSMEAAIKRTVDK-----------LTTALEKKAEAEKLLLELEEDEVPQQSDMDKEGITE 572

Query: 1509 EERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKI 1688
            EER+ML K+GLRMKPFLLLG+RGVF G VENMHLHWKYR+LVK+I+  + +E V +  ++
Sbjct: 573  EERYMLRKIGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKVITGMKNIEEVHQIARM 632

Query: 1689 LERESGGILVSVERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYD 1868
            LE ESGGILV++ERV+KGYAII+YRG+ Y  P+ LRP+TLL+K++A+K SI+AQ+ +S  
Sbjct: 633  LEAESGGILVAIERVNKGYAIIVYRGKNYERPASLRPQTLLSKREAMKRSIEAQRRQSLK 692

Query: 1869 RHIFGLRKTVEQLRE---YHREDGYEKNGGMLDRKLDC--LTGTEMDENTIPLKNNKEEG 2033
             H+  L + +E L+     + E  + ++  ++D+++    L+      N  P   +    
Sbjct: 693  LHVLKLTQNIEALKSRLAKNEEMIHIQSPDIVDKQVPVTGLSDAARGTNYQPSLASPCTS 752

Query: 2034 YEKYSGMLDRKLDCSIVPEMVEDTIP-FNNTLDFESPAPDHKTNLHLADESG*YYLS 2201
              K +  +D +       ++ EDT P   N L  +S   DH +   +  +S   Y S
Sbjct: 753  EVKMNAFVDSE-------DVAEDTDPNCPNELPSDSSDTDHSSRQDIPSDSSFQYES 802


>KCW52124.1 hypothetical protein EUGRSUZ_J01564 [Eucalyptus grandis]
          Length = 794

 Score =  366 bits (939), Expect = e-112
 Identities = 236/636 (37%), Positives = 346/636 (54%), Gaps = 60/636 (9%)
 Frame = +3

Query: 345  QTPSENEENDEWTRPPDDGTCISGT-----ELKRLITIGIRLCHVLKLGKGGVTDGFVHG 509
            + P    E + W+      T ++       ELKRL  +  +    +++  GGVT   V  
Sbjct: 109  EKPKGKGEEEGWSARSKSKTSVAELTLPEPELKRLRNLTFQTKSKMRIKGGGVTQAVVDT 168

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYKRPN- 686
            IH+RW +SE+V+++ ++     NMKRTH I+E +TGG++VWRSG+SI LYRG  YK P+ 
Sbjct: 169  IHERWKSSEIVRLK-IEGSPALNMKRTHEILERKTGGLVVWRSGTSISLYRGVSYKDPSV 227

Query: 687  --------------TRSTNEDATDGKPSEYFV--------------------------EV 746
                          T ST  D     PS+Y +                          E+
Sbjct: 228  QLNKRIFRKEGSSATSSTPADTIGRNPSQYRISEDAQASEIASENKDTGSMPEVEYEHEM 287

Query: 747  DNLSNGLDSLSTDMRGSEPLSQDDELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRR 920
            D L + L     D  G EPL  D ++ LPG    Y+ P R++ +G+   ++  E T LRR
Sbjct: 288  DKLLDSLGPRYKDWPGCEPLPVDADM-LPGTIPGYQPPFRILPYGVRATISQKEATALRR 346

Query: 921  LSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGG 1100
            L+  LP  FAL ++  LQ LA +++KLW+   IAK+A+         E M E+LK LTGG
Sbjct: 347  LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKVALKRGVMLTTSERMAEDLKKLTGG 406

Query: 1101 SLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGM----EKSNLENRAELFPSSSSSK 1268
             L+SR+KDF+V YRGK+FL       L ER+ L K +    E++ L   A + P++   +
Sbjct: 407  ILLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLRASALVVPTNHMYE 466

Query: 1269 QTENRSCIMSP-EINHKMDVCMSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFC 1445
            Q  N   +M   + N K    +  + +E+   +  I   ++    +E +L  +       
Sbjct: 467  QPGNTGTLMETLDANKKWGKKLDEQHKEKVMIEAEITRHASLVRKLERKLDFAAKRLSRA 526

Query: 1446 N--LLEPSKFSDPSAHGED--TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLH 1613
               L +  +F  P+    D  +++DEERFM  K+GLRMK FLLLG+RGVF G VENMHLH
Sbjct: 527  KRALSKVEEFLKPAERQADPESISDEERFMFHKIGLRMKAFLLLGRRGVFDGTVENMHLH 586

Query: 1614 WKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSEL 1793
            WKYR+LVKII K +  ++V K    LE ESGGILVSV++VSKGYAI+++RG+ Y+ PS L
Sbjct: 587  WKYRELVKIIVKAKTFDSVKKVALALEAESGGILVSVDKVSKGYAIVVFRGKDYKRPSTL 646

Query: 1794 RPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLR-EYHREDGYEK--NGGMLDRK 1964
            RP+ LLTK+ AL  SI+ Q++E++  H+  L+K VEQL+ E  + D  ++  N    DR 
Sbjct: 647  RPKNLLTKRKALARSIELQRLEAFQNHVANLQKKVEQLQFEIEQMDRMKEKCNNAFYDR- 705

Query: 1965 LDCLTGTEMDENTIPLKNNKEEGYEKYSGMLDRKLD 2072
            LD    T+ ++       ++EEG E Y GM + + D
Sbjct: 706  LDSAYPTDEED-------SEEEGDETYLGMYNSEND 734


>XP_010032683.1 PREDICTED: CRM-domain containing factor CFM3A,
            chloroplastic/mitochondrial isoform X2 [Eucalyptus
            grandis]
          Length = 808

 Score =  366 bits (939), Expect = e-111
 Identities = 236/636 (37%), Positives = 346/636 (54%), Gaps = 60/636 (9%)
 Frame = +3

Query: 345  QTPSENEENDEWTRPPDDGTCISGT-----ELKRLITIGIRLCHVLKLGKGGVTDGFVHG 509
            + P    E + W+      T ++       ELKRL  +  +    +++  GGVT   V  
Sbjct: 123  EKPKGKGEEEGWSARSKSKTSVAELTLPEPELKRLRNLTFQTKSKMRIKGGGVTQAVVDT 182

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYKRPN- 686
            IH+RW +SE+V+++ ++     NMKRTH I+E +TGG++VWRSG+SI LYRG  YK P+ 
Sbjct: 183  IHERWKSSEIVRLK-IEGSPALNMKRTHEILERKTGGLVVWRSGTSISLYRGVSYKDPSV 241

Query: 687  --------------TRSTNEDATDGKPSEYFV--------------------------EV 746
                          T ST  D     PS+Y +                          E+
Sbjct: 242  QLNKRIFRKEGSSATSSTPADTIGRNPSQYRISEDAQASEIASENKDTGSMPEVEYEHEM 301

Query: 747  DNLSNGLDSLSTDMRGSEPLSQDDELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRR 920
            D L + L     D  G EPL  D ++ LPG    Y+ P R++ +G+   ++  E T LRR
Sbjct: 302  DKLLDSLGPRYKDWPGCEPLPVDADM-LPGTIPGYQPPFRILPYGVRATISQKEATALRR 360

Query: 921  LSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGG 1100
            L+  LP  FAL ++  LQ LA +++KLW+   IAK+A+         E M E+LK LTGG
Sbjct: 361  LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKVALKRGVMLTTSERMAEDLKKLTGG 420

Query: 1101 SLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGM----EKSNLENRAELFPSSSSSK 1268
             L+SR+KDF+V YRGK+FL       L ER+ L K +    E++ L   A + P++   +
Sbjct: 421  ILLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLRASALVVPTNHMYE 480

Query: 1269 QTENRSCIMSP-EINHKMDVCMSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFC 1445
            Q  N   +M   + N K    +  + +E+   +  I   ++    +E +L  +       
Sbjct: 481  QPGNTGTLMETLDANKKWGKKLDEQHKEKVMIEAEITRHASLVRKLERKLDFAAKRLSRA 540

Query: 1446 N--LLEPSKFSDPSAHGED--TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLH 1613
               L +  +F  P+    D  +++DEERFM  K+GLRMK FLLLG+RGVF G VENMHLH
Sbjct: 541  KRALSKVEEFLKPAERQADPESISDEERFMFHKIGLRMKAFLLLGRRGVFDGTVENMHLH 600

Query: 1614 WKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSEL 1793
            WKYR+LVKII K +  ++V K    LE ESGGILVSV++VSKGYAI+++RG+ Y+ PS L
Sbjct: 601  WKYRELVKIIVKAKTFDSVKKVALALEAESGGILVSVDKVSKGYAIVVFRGKDYKRPSTL 660

Query: 1794 RPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLR-EYHREDGYEK--NGGMLDRK 1964
            RP+ LLTK+ AL  SI+ Q++E++  H+  L+K VEQL+ E  + D  ++  N    DR 
Sbjct: 661  RPKNLLTKRKALARSIELQRLEAFQNHVANLQKKVEQLQFEIEQMDRMKEKCNNAFYDR- 719

Query: 1965 LDCLTGTEMDENTIPLKNNKEEGYEKYSGMLDRKLD 2072
            LD    T+ ++       ++EEG E Y GM + + D
Sbjct: 720  LDSAYPTDEED-------SEEEGDETYLGMYNSEND 748


>XP_010032682.1 PREDICTED: CRM-domain containing factor CFM3A,
            chloroplastic/mitochondrial isoform X1 [Eucalyptus
            grandis]
          Length = 844

 Score =  366 bits (939), Expect = e-111
 Identities = 236/636 (37%), Positives = 346/636 (54%), Gaps = 60/636 (9%)
 Frame = +3

Query: 345  QTPSENEENDEWTRPPDDGTCISGT-----ELKRLITIGIRLCHVLKLGKGGVTDGFVHG 509
            + P    E + W+      T ++       ELKRL  +  +    +++  GGVT   V  
Sbjct: 159  EKPKGKGEEEGWSARSKSKTSVAELTLPEPELKRLRNLTFQTKSKMRIKGGGVTQAVVDT 218

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYKRPN- 686
            IH+RW +SE+V+++ ++     NMKRTH I+E +TGG++VWRSG+SI LYRG  YK P+ 
Sbjct: 219  IHERWKSSEIVRLK-IEGSPALNMKRTHEILERKTGGLVVWRSGTSISLYRGVSYKDPSV 277

Query: 687  --------------TRSTNEDATDGKPSEYFV--------------------------EV 746
                          T ST  D     PS+Y +                          E+
Sbjct: 278  QLNKRIFRKEGSSATSSTPADTIGRNPSQYRISEDAQASEIASENKDTGSMPEVEYEHEM 337

Query: 747  DNLSNGLDSLSTDMRGSEPLSQDDELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRR 920
            D L + L     D  G EPL  D ++ LPG    Y+ P R++ +G+   ++  E T LRR
Sbjct: 338  DKLLDSLGPRYKDWPGCEPLPVDADM-LPGTIPGYQPPFRILPYGVRATISQKEATALRR 396

Query: 921  LSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGG 1100
            L+  LP  FAL ++  LQ LA +++KLW+   IAK+A+         E M E+LK LTGG
Sbjct: 397  LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKVALKRGVMLTTSERMAEDLKKLTGG 456

Query: 1101 SLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGM----EKSNLENRAELFPSSSSSK 1268
             L+SR+KDF+V YRGK+FL       L ER+ L K +    E++ L   A + P++   +
Sbjct: 457  ILLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLRASALVVPTNHMYE 516

Query: 1269 QTENRSCIMSP-EINHKMDVCMSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFC 1445
            Q  N   +M   + N K    +  + +E+   +  I   ++    +E +L  +       
Sbjct: 517  QPGNTGTLMETLDANKKWGKKLDEQHKEKVMIEAEITRHASLVRKLERKLDFAAKRLSRA 576

Query: 1446 N--LLEPSKFSDPSAHGED--TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLH 1613
               L +  +F  P+    D  +++DEERFM  K+GLRMK FLLLG+RGVF G VENMHLH
Sbjct: 577  KRALSKVEEFLKPAERQADPESISDEERFMFHKIGLRMKAFLLLGRRGVFDGTVENMHLH 636

Query: 1614 WKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSEL 1793
            WKYR+LVKII K +  ++V K    LE ESGGILVSV++VSKGYAI+++RG+ Y+ PS L
Sbjct: 637  WKYRELVKIIVKAKTFDSVKKVALALEAESGGILVSVDKVSKGYAIVVFRGKDYKRPSTL 696

Query: 1794 RPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLR-EYHREDGYEK--NGGMLDRK 1964
            RP+ LLTK+ AL  SI+ Q++E++  H+  L+K VEQL+ E  + D  ++  N    DR 
Sbjct: 697  RPKNLLTKRKALARSIELQRLEAFQNHVANLQKKVEQLQFEIEQMDRMKEKCNNAFYDR- 755

Query: 1965 LDCLTGTEMDENTIPLKNNKEEGYEKYSGMLDRKLD 2072
            LD    T+ ++       ++EEG E Y GM + + D
Sbjct: 756  LDSAYPTDEED-------SEEEGDETYLGMYNSEND 784


>KCW57417.1 hypothetical protein EUGRSUZ_H00197 [Eucalyptus grandis]
          Length = 846

 Score =  360 bits (924), Expect = e-109
 Identities = 233/636 (36%), Positives = 345/636 (54%), Gaps = 60/636 (9%)
 Frame = +3

Query: 345  QTPSENEENDEWTRPPDDGTCISGT-----ELKRLITIGIRLCHVLKLGKGGVTDGFVHG 509
            + P    E + W+      T ++       EL+RL  +  +    +++  GGVT   +  
Sbjct: 161  EKPKGKGEEEGWSVRSKSKTSVAELTLPEPELRRLRNLTFQTKSKMRIKGGGVTQAILDT 220

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYKRPN- 686
            IH+RW +SE+V+++ ++     NMKRTH I+E +TGG++VWRSG+SI LYRG  YK P+ 
Sbjct: 221  IHERWKSSEIVRLK-IEGSPALNMKRTHEILERKTGGLVVWRSGTSISLYRGVSYKDPSV 279

Query: 687  --------------TRSTNEDATDGKPSEYFV--------------------------EV 746
                          T ST  D     PS+Y +                          E+
Sbjct: 280  QLNKRIFRKEGSSATSSTPADTIGRNPSQYGISEDAQASEIASENKDTGSTPEVEYEHEM 339

Query: 747  DNLSNGLDSLSTDMRGSEPLSQDDELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRR 920
            D L + L     D  G EPL  D ++ LPG    Y+ P R++ +G+   ++  E T LRR
Sbjct: 340  DKLLDSLGPRYKDWPGCEPLPVDADM-LPGTIPGYQPPFRILPYGVRATISQKEATALRR 398

Query: 921  LSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGG 1100
            L+  LP  FAL ++  LQ LA +++KLW+   IAK+A+         E M E+LK LTGG
Sbjct: 399  LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKVALKRGVMLTTSERMAEDLKKLTGG 458

Query: 1101 SLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGM----EKSNLENRAELFPSSSSSK 1268
             L+SR+KDF+V YRGK+FL       L ER+ L K +    E++ L   A + P++   +
Sbjct: 459  ILLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLRASALVVPTNHMYE 518

Query: 1269 QTENRSCIMSP-EINHKMDVCMSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFC 1445
            Q  N   +M   + N K    +  + +E+   +  +   ++    +E +L  +       
Sbjct: 519  QPGNTGTLMETLDANKKWGKKLDEQHKEKVMIEAEMTRHASLVRKLERKLDFAEKRLSRA 578

Query: 1446 N--LLEPSKFSDPSAHGED--TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLH 1613
               L +  +F  P+    D  +++DEERFM  K+GLRMK FLLLG+RGVF G VENMHLH
Sbjct: 579  ERALSKVEEFMKPAEQQADPESISDEERFMFRKIGLRMKAFLLLGRRGVFDGTVENMHLH 638

Query: 1614 WKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSEL 1793
            WKYR+LVKII K +  ++V K    LE ESGGILVSV++VSKGYAI+++RG+ Y+ PS L
Sbjct: 639  WKYRELVKIIVKAKTFDSVKKVALALEAESGGILVSVDKVSKGYAIVVFRGKDYKRPSTL 698

Query: 1794 RPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLR-EYHREDGYEK--NGGMLDRK 1964
            RP+ LLTK+ AL  SI+ Q+ E++  H+  L+K VEQL+ E  + D  ++  N    DR 
Sbjct: 699  RPKNLLTKRKALARSIELQRREAFQNHVANLQKKVEQLQSEIEQMDRMKEKCNNAFYDR- 757

Query: 1965 LDCLTGTEMDENTIPLKNNKEEGYEKYSGMLDRKLD 2072
            LD    T+ ++       ++EEG E Y GM + + D
Sbjct: 758  LDSAYPTDEED-------SEEEGDEAYLGMYNSEND 786


>XP_018717089.1 PREDICTED: CRM-domain containing factor CFM3A,
            chloroplastic/mitochondrial isoform X2 [Eucalyptus
            grandis]
          Length = 877

 Score =  360 bits (924), Expect = e-108
 Identities = 233/636 (36%), Positives = 345/636 (54%), Gaps = 60/636 (9%)
 Frame = +3

Query: 345  QTPSENEENDEWTRPPDDGTCISGT-----ELKRLITIGIRLCHVLKLGKGGVTDGFVHG 509
            + P    E + W+      T ++       EL+RL  +  +    +++  GGVT   +  
Sbjct: 192  EKPKGKGEEEGWSVRSKSKTSVAELTLPEPELRRLRNLTFQTKSKMRIKGGGVTQAILDT 251

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYKRPN- 686
            IH+RW +SE+V+++ ++     NMKRTH I+E +TGG++VWRSG+SI LYRG  YK P+ 
Sbjct: 252  IHERWKSSEIVRLK-IEGSPALNMKRTHEILERKTGGLVVWRSGTSISLYRGVSYKDPSV 310

Query: 687  --------------TRSTNEDATDGKPSEYFV--------------------------EV 746
                          T ST  D     PS+Y +                          E+
Sbjct: 311  QLNKRIFRKEGSSATSSTPADTIGRNPSQYGISEDAQASEIASENKDTGSTPEVEYEHEM 370

Query: 747  DNLSNGLDSLSTDMRGSEPLSQDDELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRR 920
            D L + L     D  G EPL  D ++ LPG    Y+ P R++ +G+   ++  E T LRR
Sbjct: 371  DKLLDSLGPRYKDWPGCEPLPVDADM-LPGTIPGYQPPFRILPYGVRATISQKEATALRR 429

Query: 921  LSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGG 1100
            L+  LP  FAL ++  LQ LA +++KLW+   IAK+A+         E M E+LK LTGG
Sbjct: 430  LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKVALKRGVMLTTSERMAEDLKKLTGG 489

Query: 1101 SLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGM----EKSNLENRAELFPSSSSSK 1268
             L+SR+KDF+V YRGK+FL       L ER+ L K +    E++ L   A + P++   +
Sbjct: 490  ILLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLRASALVVPTNHMYE 549

Query: 1269 QTENRSCIMSP-EINHKMDVCMSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFC 1445
            Q  N   +M   + N K    +  + +E+   +  +   ++    +E +L  +       
Sbjct: 550  QPGNTGTLMETLDANKKWGKKLDEQHKEKVMIEAEMTRHASLVRKLERKLDFAEKRLSRA 609

Query: 1446 N--LLEPSKFSDPSAHGED--TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLH 1613
               L +  +F  P+    D  +++DEERFM  K+GLRMK FLLLG+RGVF G VENMHLH
Sbjct: 610  ERALSKVEEFMKPAEQQADPESISDEERFMFRKIGLRMKAFLLLGRRGVFDGTVENMHLH 669

Query: 1614 WKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSEL 1793
            WKYR+LVKII K +  ++V K    LE ESGGILVSV++VSKGYAI+++RG+ Y+ PS L
Sbjct: 670  WKYRELVKIIVKAKTFDSVKKVALALEAESGGILVSVDKVSKGYAIVVFRGKDYKRPSTL 729

Query: 1794 RPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLR-EYHREDGYEK--NGGMLDRK 1964
            RP+ LLTK+ AL  SI+ Q+ E++  H+  L+K VEQL+ E  + D  ++  N    DR 
Sbjct: 730  RPKNLLTKRKALARSIELQRREAFQNHVANLQKKVEQLQSEIEQMDRMKEKCNNAFYDR- 788

Query: 1965 LDCLTGTEMDENTIPLKNNKEEGYEKYSGMLDRKLD 2072
            LD    T+ ++       ++EEG E Y GM + + D
Sbjct: 789  LDSAYPTDEED-------SEEEGDEAYLGMYNSEND 817


>XP_010069158.1 PREDICTED: CRM-domain containing factor CFM3A,
            chloroplastic/mitochondrial isoform X1 [Eucalyptus
            grandis]
          Length = 914

 Score =  360 bits (924), Expect = e-108
 Identities = 233/636 (36%), Positives = 345/636 (54%), Gaps = 60/636 (9%)
 Frame = +3

Query: 345  QTPSENEENDEWTRPPDDGTCISGT-----ELKRLITIGIRLCHVLKLGKGGVTDGFVHG 509
            + P    E + W+      T ++       EL+RL  +  +    +++  GGVT   +  
Sbjct: 229  EKPKGKGEEEGWSVRSKSKTSVAELTLPEPELRRLRNLTFQTKSKMRIKGGGVTQAILDT 288

Query: 510  IHQRWSNSEVVKIRCVDDFYKSNMKRTHRIIEARTGGIIVWRSGSSIVLYRGKDYKRPN- 686
            IH+RW +SE+V+++ ++     NMKRTH I+E +TGG++VWRSG+SI LYRG  YK P+ 
Sbjct: 289  IHERWKSSEIVRLK-IEGSPALNMKRTHEILERKTGGLVVWRSGTSISLYRGVSYKDPSV 347

Query: 687  --------------TRSTNEDATDGKPSEYFV--------------------------EV 746
                          T ST  D     PS+Y +                          E+
Sbjct: 348  QLNKRIFRKEGSSATSSTPADTIGRNPSQYGISEDAQASEIASENKDTGSTPEVEYEHEM 407

Query: 747  DNLSNGLDSLSTDMRGSEPLSQDDELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRR 920
            D L + L     D  G EPL  D ++ LPG    Y+ P R++ +G+   ++  E T LRR
Sbjct: 408  DKLLDSLGPRYKDWPGCEPLPVDADM-LPGTIPGYQPPFRILPYGVRATISQKEATALRR 466

Query: 921  LSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGG 1100
            L+  LP  FAL ++  LQ LA +++KLW+   IAK+A+         E M E+LK LTGG
Sbjct: 467  LARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKVALKRGVMLTTSERMAEDLKKLTGG 526

Query: 1101 SLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGM----EKSNLENRAELFPSSSSSK 1268
             L+SR+KDF+V YRGK+FL       L ER+ L K +    E++ L   A + P++   +
Sbjct: 527  ILLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLRASALVVPTNHMYE 586

Query: 1269 QTENRSCIMSP-EINHKMDVCMSVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFC 1445
            Q  N   +M   + N K    +  + +E+   +  +   ++    +E +L  +       
Sbjct: 587  QPGNTGTLMETLDANKKWGKKLDEQHKEKVMIEAEMTRHASLVRKLERKLDFAEKRLSRA 646

Query: 1446 N--LLEPSKFSDPSAHGED--TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLH 1613
               L +  +F  P+    D  +++DEERFM  K+GLRMK FLLLG+RGVF G VENMHLH
Sbjct: 647  ERALSKVEEFMKPAEQQADPESISDEERFMFRKIGLRMKAFLLLGRRGVFDGTVENMHLH 706

Query: 1614 WKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSEL 1793
            WKYR+LVKII K +  ++V K    LE ESGGILVSV++VSKGYAI+++RG+ Y+ PS L
Sbjct: 707  WKYRELVKIIVKAKTFDSVKKVALALEAESGGILVSVDKVSKGYAIVVFRGKDYKRPSTL 766

Query: 1794 RPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLR-EYHREDGYEK--NGGMLDRK 1964
            RP+ LLTK+ AL  SI+ Q+ E++  H+  L+K VEQL+ E  + D  ++  N    DR 
Sbjct: 767  RPKNLLTKRKALARSIELQRREAFQNHVANLQKKVEQLQSEIEQMDRMKEKCNNAFYDR- 825

Query: 1965 LDCLTGTEMDENTIPLKNNKEEGYEKYSGMLDRKLD 2072
            LD    T+ ++       ++EEG E Y GM + + D
Sbjct: 826  LDSAYPTDEED-------SEEEGDEAYLGMYNSEND 854


>XP_009352661.1 PREDICTED: CRM-domain containing factor CFM3,
            chloroplastic/mitochondrial isoform X1 [Pyrus x
            bretschneideri] XP_009352662.1 PREDICTED: CRM-domain
            containing factor CFM3, chloroplastic/mitochondrial
            isoform X1 [Pyrus x bretschneideri] XP_009352663.1
            PREDICTED: CRM-domain containing factor CFM3,
            chloroplastic/mitochondrial isoform X1 [Pyrus x
            bretschneideri]
          Length = 985

 Score =  350 bits (899), Expect = e-104
 Identities = 231/610 (37%), Positives = 341/610 (55%), Gaps = 63/610 (10%)
 Frame = +3

Query: 420  ELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKRTHRI 599
            ELKRL  + +R+   +K+G  G+T   V  IH++W   EVVK++  + F   NMKRTH I
Sbjct: 373  ELKRLRNVSLRMLERIKVGVSGITQALVDTIHEKWKVDEVVKLKFEEPF-SLNMKRTHEI 431

Query: 600  IEARTGGIIVWRSGSSIVLYRGKDYKRPNTRS------TN-------EDAT-DG------ 719
            +E++TGG+++WRSGSS+VLYRG  Y  P  +S      TN       EDAT DG      
Sbjct: 432  LESKTGGLVIWRSGSSVVLYRGMTYNIPCVQSYAKQSQTNSHMLHHTEDATRDGMHKVGM 491

Query: 720  ------------KPSEYFVEVDN--------LSNGLDSLST---DMRGSEPLSQD-DELP 827
                        + +EY  ++          L++ LD L     D  G EPL  D D LP
Sbjct: 492  KDVSRTTDFPSLESAEYLKDLSQRELMDLSVLNHLLDELGPRFKDWIGREPLPVDADLLP 551

Query: 828  --LPGFAYKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKL 1001
              +PG  YK P RL+ +G+   L + ++T  RRL+ ++P  FAL +  +LQ LA ++VKL
Sbjct: 552  PVIPG--YKTPFRLLPYGVRPGLRNKDMTKFRRLARTVPPHFALGRNRELQGLANAMVKL 609

Query: 1002 WDTCEIAKIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVL 1181
            W+   IAKIA+         E M EELK LTGG+L+SR+KDFIV YRG D+LPS    VL
Sbjct: 610  WEKSAIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPSVVTGVL 669

Query: 1182 AERKALLKGMEKSNLENRAELFPSSSSSKQTENRSCIMSPEINHKMDVC------MSVEG 1343
             ER+ L + +++   E   ++      SK   ++  +++  +   +         ++++ 
Sbjct: 670  KERRKL-RDLQQDEEEQARQMASDFVESKPEASKGQLVAGTLAETLAATTRWRNQLTIDK 728

Query: 1344 QEERASDTNILEDSNGSVMVENELTSSVDN--------DEFCNLLEPSKFSDPSAHGEDT 1499
             E+   D+ +   ++    +E +L  +                 LEPS   D      +T
Sbjct: 729  VEKMTRDSTLARHASLVRHLEKKLALAKGKLRKAEKALARVQESLEPSDLPDDL----ET 784

Query: 1500 LTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKA 1679
            LTDE+RF+  K+GL MKPFLLLG+RGV++G +ENMHLHWK+R+LVKII + +  E V   
Sbjct: 785  LTDEDRFLFRKIGLSMKPFLLLGRRGVYSGTIENMHLHWKHRELVKIIVRGKSFEQVKHV 844

Query: 1680 GKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIE 1859
               LE ESGG+LVS+++ +KGYA+I+YRG+ Y+CP  LRPR LLT++ AL  SI+ Q+ E
Sbjct: 845  AISLEAESGGVLVSLDKTTKGYAVIVYRGKNYQCPLPLRPRNLLTRRQALARSIELQRRE 904

Query: 1860 SYDRHIFGLRKTVEQLREYHREDGYEKNGGMLD--RKLDCLTGTEMDENTIPL-KNNKEE 2030
            +   HI  L + VE L+   ++ G    G M+D  R L     + +D+ +IP   +++EE
Sbjct: 905  ALKHHISDLLERVELLKSELKDTG---KGKMVDGGRTLP----STVDDYSIPSDDSDEEE 957

Query: 2031 GYEKYSGMLD 2060
            G E Y  + D
Sbjct: 958  GEEAYLEVYD 967


>XP_018502185.1 PREDICTED: CRM-domain containing factor CFM3,
            chloroplastic/mitochondrial isoform X2 [Pyrus x
            bretschneideri]
          Length = 984

 Score =  348 bits (892), Expect = e-103
 Identities = 231/609 (37%), Positives = 339/609 (55%), Gaps = 62/609 (10%)
 Frame = +3

Query: 420  ELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKRTHRI 599
            ELKRL  + +R+   +K+G  G+T   V  IH++W   EVVK++  + F   NMKRTH I
Sbjct: 373  ELKRLRNVSLRMLERIKVGVSGITQALVDTIHEKWKVDEVVKLKFEEPF-SLNMKRTHEI 431

Query: 600  IEARTGGIIVWRSGSSIVLYRGKDYKRPNTRS------TN-------EDAT-DG------ 719
            +E++TGG+++WRSGSS+VLYRG  Y  P  +S      TN       EDAT DG      
Sbjct: 432  LESKTGGLVIWRSGSSVVLYRGMTYNIPCVQSYAKQSQTNSHMLHHTEDATRDGMHKVGM 491

Query: 720  ------------KPSEYFVEVDN--------LSNGLDSLST---DMRGSEPLSQD-DELP 827
                        + +EY  ++          L++ LD L     D  G EPL  D D LP
Sbjct: 492  KDVSRTTDFPSLESAEYLKDLSQRELMDLSVLNHLLDELGPRFKDWIGREPLPVDADLLP 551

Query: 828  --LPGFAYKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKL 1001
              +PG  YK P RL+ +G+   L + ++T  RRL+ ++P  FAL +  +LQ LA ++VKL
Sbjct: 552  PVIPG--YKTPFRLLPYGVRPGLRNKDMTKFRRLARTVPPHFALGRNRELQGLANAMVKL 609

Query: 1002 WDTCEIAKIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVL 1181
            W+   IAKIA+         E M EELK LTGG+L+SR+KDFIV YRG D+LPS    VL
Sbjct: 610  WEKSAIAKIAIKRGVQNTCNERMAEELKRLTGGTLLSRNKDFIVFYRGNDYLPSVVTGVL 669

Query: 1182 AERKALLKGMEKSNLENRAELFPSSSSSKQTENRSCIMSPEINHKMDVC------MSVEG 1343
             ER+ L + +++   E   ++      SK   ++  +++  +   +         ++++ 
Sbjct: 670  KERRKL-RDLQQDEEEQARQMASDFVESKPEASKGQLVAGTLAETLAATTRWRNQLTIDK 728

Query: 1344 QEERASDTNILEDSNGSVMVENELTSSVDN--------DEFCNLLEPSKFSDPSAHGEDT 1499
             E+   D+ +   ++    +E +L  +                 LEPS   D      +T
Sbjct: 729  VEKMTRDSTLARHASLVRHLEKKLALAKGKLRKAEKALARVQESLEPSDLPDDL----ET 784

Query: 1500 LTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKA 1679
            LTDE+RF+  K+GL MKPFLLLG+RGV++G +ENMHLHWK+R+LVKII + +  E V   
Sbjct: 785  LTDEDRFLFRKIGLSMKPFLLLGRRGVYSGTIENMHLHWKHRELVKIIVRGKSFEQVKHV 844

Query: 1680 GKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIE 1859
               LE ESGG+LVS+++ +KGYA+I+YRG+ Y+CP  LRPR LLT++ AL  SI+ Q+ E
Sbjct: 845  AISLEAESGGVLVSLDKTTKGYAVIVYRGKNYQCPLPLRPRNLLTRRQALARSIELQRRE 904

Query: 1860 SYDRHIFGLRKTVEQLR-EYHREDGYEKNGGMLDRKLDCLTGTEMDENTIPL-KNNKEEG 2033
            +   HI  L + VE L+ E     G   +GG   R L     + +D+ +IP   +++EEG
Sbjct: 905  ALKHHISDLLERVELLKSELDTGKGKMVDGG---RTLP----STVDDYSIPSDDSDEEEG 957

Query: 2034 YEKYSGMLD 2060
             E Y  + D
Sbjct: 958  EEAYLEVYD 966


>XP_016718281.1 PREDICTED: CRM-domain containing factor CFM3,
            chloroplastic/mitochondrial [Gossypium hirsutum]
          Length = 855

 Score =  339 bits (870), Expect = e-101
 Identities = 228/633 (36%), Positives = 343/633 (54%), Gaps = 56/633 (8%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I   EL+RL  +G+ L   + + K G+T   +  IH +W   E+V+++   +F   +M+ 
Sbjct: 211  IEDEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLK-FHEFLAVDMRT 269

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRSTNE--------------------- 704
             H I+E RTGG+++WRSGS +V+YRG +Y+ P+   + E                     
Sbjct: 270  AHEIVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSGEGEALFIPDVSSAGKRESETGS 329

Query: 705  -------DATDGKP------SEYFVEVDNLSNGLDSLSTDMRGSEPLSQDDELPLPGF-A 842
                   D    KP      +E   E ++L +GL     +  G+  L  D +L  P    
Sbjct: 330  ASTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 389

Query: 843  YKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIA 1022
            YK P RL+  G+  +LT+SE+T LR+++ SLP  FAL +  + Q LAA+++KLW+   +A
Sbjct: 390  YKTPFRLLPAGMRPRLTNSEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 449

Query: 1023 KIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALL 1202
            KIAV       + + M EELK LTGG L+ R+K FIV+YRGKDFLP++ AA LAER+ L 
Sbjct: 450  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 509

Query: 1203 KGMEKSNLENRAELFPSSSSSK---QTENRSCIMSPEINHKMDVCMSVEGQEERASDTNI 1373
            K ++ +  + R +    + S +   Q    +     E   +    +S E +E+   + + 
Sbjct: 510  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 569

Query: 1374 LEDSNGSVMVENELT----SSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGL 1541
             + +     VE++L       +  +     +E S       + ++T+TDEER M  ++GL
Sbjct: 570  AKHAKLIKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 629

Query: 1542 RMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVS 1721
            RMKP+L LG RGVF G++ENMHLHWK+R+LVK+ISK++ L  V  + ++LE ESGGILV+
Sbjct: 630  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 689

Query: 1722 VERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVE 1901
            +ERV KGYA+I YRG+ YR P  +RPR LLTK  ALK S+  Q+ E+  +HI  L  T+E
Sbjct: 690  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 749

Query: 1902 QLREY--HREDGYEKNG------GMLDRKLDCLTGTEMDEN----TIPLKNNKEEGYEKY 2045
            Q+++     EDG + N       G  D  +  LT +E +EN    T     N+ + YE  
Sbjct: 750  QMKKEIGASEDGDDDNNRGSGEHGQFD-PVSELTESEDEENIASDTDDEYKNEFDDYEDD 808

Query: 2046 SGMLD--RKLDCSIVPEMVEDTIPFNNTLDFES 2138
            S  +D   + D   V E  ED    +   D ES
Sbjct: 809  SEFVDDHDEGDSEFVDEDDEDEADNSEWEDEES 841


>XP_012440292.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Gossypium raimondii]
          Length = 854

 Score =  338 bits (868), Expect = e-101
 Identities = 225/633 (35%), Positives = 343/633 (54%), Gaps = 56/633 (8%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I   EL+RL  +G+ L   + + K G+T   +  IH +W   E+V+++   +F   +M+ 
Sbjct: 210  IEDEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLK-FHEFLAVDMRT 268

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRSTNE--------------------- 704
             H I+E RTGG+++WRSGS +V+YRG +Y+ P+   + E                     
Sbjct: 269  AHEIVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSGEGEALFIPDVSSAGKRESETGS 328

Query: 705  -------DATDGKP------SEYFVEVDNLSNGLDSLSTDMRGSEPLSQDDELPLPGF-A 842
                   D    KP      +E   E ++L +GL     +  G+  L  D +L  P    
Sbjct: 329  GSTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 388

Query: 843  YKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIA 1022
            YK P RL+  G+  +LT++E+T LR+++ SLP  FAL +  + Q LAA+++KLW+   +A
Sbjct: 389  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVA 448

Query: 1023 KIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALL 1202
            KIAV       + + M EELK LTGG L+ R+K FIV+YRGKDFLP++ AA LAER+ L 
Sbjct: 449  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 508

Query: 1203 KGMEKSNLENRAELFPSSSSSK---QTENRSCIMSPEINHKMDVCMSVEGQEERASDTNI 1373
            K ++ +  + R +    + S +   Q    +     E   +    +S E +E+   + + 
Sbjct: 509  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 568

Query: 1374 LEDSNGSVMVENELT----SSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGL 1541
             + +     VE++L       +  +     +E S       + ++T+TDEER M  ++GL
Sbjct: 569  AKHAKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 628

Query: 1542 RMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVS 1721
            RMKP+L LG RGVF G++ENMHLHWK+R+LVK+ISK++ L  V  + ++LE ESGGILV+
Sbjct: 629  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 688

Query: 1722 VERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVE 1901
            +ERV KGYA+I YRG+ YR P  +RPR LLTK  ALK S+  Q+ E+  +HI  L  T+E
Sbjct: 689  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 748

Query: 1902 QLREY--HREDGYEKNG------GMLDRKLDCLTGTEMDENTIPLKN----NKEEGYEKY 2045
            Q+++     EDG + N       G  D  +   T +E +EN  P  +    N+ + YE  
Sbjct: 749  QMKKEIDASEDGDDDNNRGSGKHGQFD-PVSEFTESEDEENIAPDTDDEYKNEFDDYEDD 807

Query: 2046 SGMLD--RKLDCSIVPEMVEDTIPFNNTLDFES 2138
            S  +D   + D   V +  ED    +   D ES
Sbjct: 808  SEFVDDHNEDDSEFVDDDDEDEADNSEWEDEES 840


>XP_012440291.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Gossypium raimondii]
          Length = 854

 Score =  338 bits (868), Expect = e-101
 Identities = 225/633 (35%), Positives = 343/633 (54%), Gaps = 56/633 (8%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I   EL+RL  +G+ L   + + K G+T   +  IH +W   E+V+++   +F   +M+ 
Sbjct: 210  IEDEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLK-FHEFLAVDMRT 268

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRSTNE--------------------- 704
             H I+E RTGG+++WRSGS +V+YRG +Y+ P+   + E                     
Sbjct: 269  AHEIVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSGEGEALFIPDVSSAGKRESETGS 328

Query: 705  -------DATDGKP------SEYFVEVDNLSNGLDSLSTDMRGSEPLSQDDELPLPGF-A 842
                   D    KP      +E   E ++L +GL     +  G+  L  D +L  P    
Sbjct: 329  GSTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 388

Query: 843  YKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIA 1022
            YK P RL+  G+  +LT++E+T LR+++ SLP  FAL +  + Q LAA+++KLW+   +A
Sbjct: 389  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVA 448

Query: 1023 KIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALL 1202
            KIAV       + + M EELK LTGG L+ R+K FIV+YRGKDFLP++ AA LAER+ L 
Sbjct: 449  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 508

Query: 1203 KGMEKSNLENRAELFPSSSSSK---QTENRSCIMSPEINHKMDVCMSVEGQEERASDTNI 1373
            K ++ +  + R +    + S +   Q    +     E   +    +S E +E+   + + 
Sbjct: 509  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 568

Query: 1374 LEDSNGSVMVENELT----SSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGL 1541
             + +     VE++L       +  +     +E S       + ++T+TDEER M  ++GL
Sbjct: 569  AKHAKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 628

Query: 1542 RMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVS 1721
            RMKP+L LG RGVF G++ENMHLHWK+R+LVK+ISK++ L  V  + ++LE ESGGILV+
Sbjct: 629  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 688

Query: 1722 VERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVE 1901
            +ERV KGYA+I YRG+ YR P  +RPR LLTK  ALK S+  Q+ E+  +HI  L  T+E
Sbjct: 689  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 748

Query: 1902 QLREY--HREDGYEKNG------GMLDRKLDCLTGTEMDENTIPLKN----NKEEGYEKY 2045
            Q+++     EDG + N       G  D  +   T +E +EN  P  +    N+ + YE  
Sbjct: 749  QMKKEIDASEDGGDDNNRSSGKHGQFD-PVSEFTESEDEENIAPDTDDEYKNEFDDYEDD 807

Query: 2046 SGMLD--RKLDCSIVPEMVEDTIPFNNTLDFES 2138
            S  +D   + D   V +  ED    +   D ES
Sbjct: 808  SEFVDDHNEDDSEFVDDDDEDEADNSEWEDEES 840


>XP_017637137.1 PREDICTED: CRM-domain containing factor CFM3,
            chloroplastic/mitochondrial [Gossypium arboreum]
          Length = 855

 Score =  336 bits (862), Expect = e-100
 Identities = 218/605 (36%), Positives = 333/605 (55%), Gaps = 54/605 (8%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I   EL+RL  +G+ L   + + K G+T   +  IH +W   E+V+++   +F   +M+ 
Sbjct: 211  IEDEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLK-FHEFLSVDMRT 269

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRSTNE--------------------- 704
             H I+E RTGG+++WRSGS +V+YRG +Y+ P+   + E                     
Sbjct: 270  AHEIVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSGEGEALFIPDVSSAGKRESETGS 329

Query: 705  -------DATDGKP------SEYFVEVDNLSNGLDSLSTDMRGSEPLSQDDELPLPGF-A 842
                   D    KP      +E   E ++L +GL     +  G+  L  D +L  P    
Sbjct: 330  ASTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 389

Query: 843  YKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIA 1022
            YK P RL+  G+  +LT++E+T LR+++ SLP  FAL +  + Q LAA+++KLW+   +A
Sbjct: 390  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 449

Query: 1023 KIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALL 1202
            KIAV       + + M EELK LTGG L+ R+K FIV+YRGKDFLP++ AA LAER+ L 
Sbjct: 450  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 509

Query: 1203 KGMEKSNLENRAELFPSSSSSK---QTENRSCIMSPEINHKMDVCMSVEGQEERASDTNI 1373
            K ++ +  + R +    + S +   Q    +     E   +    +S E +E+   + + 
Sbjct: 510  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 569

Query: 1374 LEDSNGSVMVENELT----SSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGL 1541
             + +     VE++L       +  +     +E S       + ++T+TDEER M  ++GL
Sbjct: 570  AKHAKLIKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 629

Query: 1542 RMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVS 1721
            RMKP+L LG RGVF G++ENMHLHWK+R+LVK+ISK++ L  V  + ++LE ESGGILV+
Sbjct: 630  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 689

Query: 1722 VERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVE 1901
            +ERV KGYA+I YRG+ YR P  +RPR LLTK  ALK S+  Q+ E+  +HI  L  T+E
Sbjct: 690  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 749

Query: 1902 QLREY--HREDGYEKNG------GMLDRKLDCLTGTEMDEN----TIPLKNNKEEGYEKY 2045
            Q+++     EDG + N       G  D  +  L+ +E +EN    T     N+ + YE  
Sbjct: 750  QMKKEIGASEDGDDDNNRGSGEHGQFD-PVSELSESEDEENIASDTDDEYKNEFDDYEDD 808

Query: 2046 SGMLD 2060
            S  +D
Sbjct: 809  SEFVD 813


>KHG01961.1 Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 823

 Score =  335 bits (859), Expect = e-100
 Identities = 206/556 (37%), Positives = 314/556 (56%), Gaps = 44/556 (7%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I   EL+RL  +G+ L   + + K G+T   +  IH +W   E+V+++   +F   +M+ 
Sbjct: 211  IEDEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLK-FHEFLAVDMRT 269

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRSTNE--------------------- 704
             H I+E RTGG+++WRSGS +V+YRG +Y+ P+   + E                     
Sbjct: 270  AHEIVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSGEGEALFIPDVSSAGKRESETGS 329

Query: 705  -------DATDGKP------SEYFVEVDNLSNGLDSLSTDMRGSEPLSQDDELPLPGF-A 842
                   D    KP      +E   E ++L +GL     +  G+  L  D +L  P    
Sbjct: 330  ASTSEKSDKVVVKPECSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 389

Query: 843  YKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIA 1022
            YK P RL+  G+  +LT++E+T LR+++ SLP  FAL +  + Q LAA+++KLW+   +A
Sbjct: 390  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSLVA 449

Query: 1023 KIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALL 1202
            KIAV       + + M EELK LTGG L+ R+K FIV+YRGKDFLP++ AA LAER+ L 
Sbjct: 450  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 509

Query: 1203 KGMEKSNLENRAELFPSSSSSK---QTENRSCIMSPEINHKMDVCMSVEGQEERASDTNI 1373
            K ++ +  + R +    + S +   Q    +     E   +    +S E +E+   + + 
Sbjct: 510  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 569

Query: 1374 LEDSNGSVMVENELT----SSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGL 1541
             + +     VE++L       +  +     +E S       + ++T+TDEER M  ++GL
Sbjct: 570  AKHAKLIKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 629

Query: 1542 RMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVS 1721
            RMKP+L LG RGVF G++ENMHLHWK+R+LVK+ISK++ L  V  + ++LE ESGGILV+
Sbjct: 630  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 689

Query: 1722 VERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVE 1901
            +ERV KGYA+I YRG+ YR P  +RPR LLTK  ALK S+  Q+ E+  +HI  L  T+E
Sbjct: 690  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALGQHISKLENTIE 749

Query: 1902 QLREY--HREDGYEKN 1943
            Q+++     EDG + N
Sbjct: 750  QMKKEIGASEDGDDDN 765


>XP_012440290.1 PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Gossypium raimondii] KJB52985.1
            hypothetical protein B456_008G286900 [Gossypium
            raimondii]
          Length = 868

 Score =  336 bits (861), Expect = 1e-99
 Identities = 206/556 (37%), Positives = 314/556 (56%), Gaps = 44/556 (7%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I   EL+RL  +G+ L   + + K G+T   +  IH +W   E+V+++   +F   +M+ 
Sbjct: 210  IEDEELRRLRRMGMHLRERINVPKAGITKVVLEKIHDKWRKEELVRLK-FHEFLAVDMRT 268

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRSTNE--------------------- 704
             H I+E RTGG+++WRSGS +V+YRG +Y+ P+   + E                     
Sbjct: 269  AHEIVERRTGGLVIWRSGSVMVVYRGSNYEGPSKSQSGEGEALFIPDVSSAGKRESETGS 328

Query: 705  -------DATDGKP------SEYFVEVDNLSNGLDSLSTDMRGSEPLSQDDELPLPGF-A 842
                   D    KP      +E   E ++L +GL     +  G+  L  D +L  P    
Sbjct: 329  GSTSEKSDKVVVKPERSESMTEEEAEYNSLLDGLGPRFVEWWGTGILPVDADLLPPKIPG 388

Query: 843  YKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIA 1022
            YK P RL+  G+  +LT++E+T LR+++ SLP  FAL +  + Q LAA+++KLW+   +A
Sbjct: 389  YKTPFRLLPAGMRPRLTNAEMTNLRKIAKSLPCHFALGRNRNHQGLAAAIIKLWEKSVVA 448

Query: 1023 KIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALL 1202
            KIAV       + + M EELK LTGG L+ R+K FIV+YRGKDFLP++ AA LAER+ L 
Sbjct: 449  KIAVKRGIQNTNNKLMAEELKNLTGGVLLLRNKYFIVIYRGKDFLPTNVAAALAERQDLT 508

Query: 1203 KGMEKSNLENRAELFPSSSSSK---QTENRSCIMSPEINHKMDVCMSVEGQEERASDTNI 1373
            K ++ +  + R +    + S +   Q    +     E   +    +S E +E+   + + 
Sbjct: 509  KQIQDAEEKLRIKAVEPAQSGEDKGQAPAGTLAEFYEAQARWGRDISAEEREKMIEEASK 568

Query: 1374 LEDSNGSVMVENELT----SSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGL 1541
             + +     VE++L       +  +     +E S       + ++T+TDEER M  ++GL
Sbjct: 569  AKHAKLVKRVEHKLAIAQAKKLRAERLLAKIEASMIPAAPDYDQETITDEERVMFRRVGL 628

Query: 1542 RMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVS 1721
            RMKP+L LG RGVF G++ENMHLHWK+R+LVK+ISK++ L  V  + ++LE ESGGILV+
Sbjct: 629  RMKPYLPLGVRGVFDGVIENMHLHWKHRELVKLISKQKVLAFVEDSARLLEYESGGILVA 688

Query: 1722 VERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVE 1901
            +ERV KGYA+I YRG+ YR P  +RPR LLTK  ALK S+  Q+ E+  +HI  L  T+E
Sbjct: 689  IERVPKGYALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHISKLENTIE 748

Query: 1902 QLREY--HREDGYEKN 1943
            Q+++     EDG + N
Sbjct: 749  QMKKEIDASEDGGDDN 764


>XP_015887836.1 PREDICTED: CRM-domain containing factor CFM3A,
            chloroplastic/mitochondrial [Ziziphus jujuba]
          Length = 913

 Score =  337 bits (863), Expect = 1e-99
 Identities = 233/605 (38%), Positives = 325/605 (53%), Gaps = 62/605 (10%)
 Frame = +3

Query: 417  TELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKRTHR 596
            +EL+RL  +  +  H  ++G  GVT   V  IH+RW  SE+V+++ +D     NMKR H 
Sbjct: 248  SELRRLRNLTFQKKHKTRIGGAGVTREVVEMIHERWKTSEIVRLK-IDGPPALNMKRMHE 306

Query: 597  IIEARTGGIIVWRSGSSIVLYRGKDYKRP---------------NTRSTNEDATDGKPSE 731
            I+E +TGG++VWRSG+S+ LYRG  Y+ P               +T  T  D   G PS 
Sbjct: 307  ILERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKRTYDKDEVSSTLPTVSDKPMGDPSR 366

Query: 732  YFV-------------------------------EVDNLSNGLDSLSTDMRGSEPLSQDD 818
            Y                                 EVD L +GL     D  G +PL  D 
Sbjct: 367  YASDRNVDMSLKKSESTSLEKKDTEYVPEVKYEDEVDKLLDGLGPRYEDWPGCDPLPVDA 426

Query: 819  ELPLPGF--AYKKPLRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASV 992
            +L LPG    Y+ P R++ +G+   L   E T LRRL+  LP  FAL ++  LQ LAA++
Sbjct: 427  DL-LPGIVPGYQPPFRVLPYGVRPSLGLREATSLRRLARVLPPHFALGRSRQLQGLAAAM 485

Query: 993  VKLWDTCEIAKIAVYPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFA 1172
            +KLW+   IAKIA+         E M E++K LTGG L+SR+KDF+V YRGK+FL     
Sbjct: 486  IKLWEKSSIAKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEVT 545

Query: 1173 AVLAERKALLKGMEKSNLENRAELFPSSSSSKQTE--NRSCIMSP-----EINHKMDVCM 1331
              L ER+ L K ++    E +A L  S+    Q +  +RS I        + N K    +
Sbjct: 546  EALLERERLAKSLQDE--EEQARLRASAMVIPQIDEPDRSRIAGTLGETLDANAKWGKKL 603

Query: 1332 SVEGQEERASDTNILEDSNGSVMVENELTSSVDNDEFCN--LLEPSKFSDPSAHGE---D 1496
              + ++    +  I+  +N    +E +L  +          L +  +F  P AH +   +
Sbjct: 604  DDQHKKNVMQEAEIIRHANLVAKLERKLAFAERKLMRAEKALSKVEEFLKP-AHTQADPE 662

Query: 1497 TLTDEERFMLTKLGLRMKPFLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTK 1676
            ++TDEERFM  KLGLRMK FLLLG+RGVF G VENMHLHWKYR+LVKI+   +  E V K
Sbjct: 663  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVLAKTFEQVKK 722

Query: 1677 AGKILERESGGILVSVERVSKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQI 1856
                LE ESGG+LVSV++VSK YAII+YRG+ Y+ PS LRP+ LLTK+ AL  SI+ Q+ 
Sbjct: 723  TALALEAESGGVLVSVDKVSKRYAIIMYRGKDYQRPSTLRPKNLLTKRKALARSIEIQRQ 782

Query: 1857 ESYDRHIFGLRKTVEQLR-EYHREDGYEKNGG-MLDRKLDCLTGTEMDENTIPLKNNKEE 2030
            E+  +HI  ++  V++LR E  + D  +  G   L  KLD    +E +E       ++EE
Sbjct: 783  EALLKHISAVQSKVDKLRSELEQMDTVKDRGDEALYDKLDSSYPSEDEE-------SEEE 835

Query: 2031 GYEKY 2045
            G E Y
Sbjct: 836  GPEAY 840


>KMT11173.1 hypothetical protein BVRB_5g111010 [Beta vulgaris subsp. vulgaris]
          Length = 820

 Score =  334 bits (857), Expect = 2e-99
 Identities = 216/579 (37%), Positives = 324/579 (55%), Gaps = 38/579 (6%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I  +ELKRL   G+ L   + + K G+T   +  IH +W  SE+V+++  +D    +MK 
Sbjct: 215  IEESELKRLRGQGMVLRDKVNVPKAGLTQAVLEKIHTKWRKSELVRLKFHEDL-AHDMKT 273

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRS------------TNEDATDG---- 719
             H ++E RTGG+++WRSGS +V+YRG +Y+ P ++              NE+AT      
Sbjct: 274  AHILVERRTGGLVLWRSGSVMVVYRGMNYEGPPSKPLADASSVNIAAVNNENATGASIES 333

Query: 720  -----KPSEYF-------VEVDNLSNGLDSLSTDMRGSEPLSQDDEL---PLPGFAYKKP 854
                 KP E+         E ++L + L     D  G+  L  D +L    +PGF  K P
Sbjct: 334  ISSQVKPLEHSRSLTAEEAEYNDLLDCLGPRFVDWWGTGLLPVDGDLLPQTVPGF--KSP 391

Query: 855  LRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAV 1034
            LRL+  G+   LT++E+T LR+L+ SLP  FAL +    Q LAA+++KLW+   +AKIAV
Sbjct: 392  LRLLPTGMRLGLTNAELTNLRKLAKSLPCHFALGRNRHHQGLAAAIIKLWEKSLVAKIAV 451

Query: 1035 YPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGME 1214
                   + + M+EELK LTGG+L+ R+K FIV+YRGKDFLPSS AA + ER+ L K ++
Sbjct: 452  KRGIQNTNNKLMSEELKTLTGGTLLLRNKYFIVIYRGKDFLPSSVAAAVLERQELTKKIQ 511

Query: 1215 KSNLENRAELFPSSSSSKQTENRSCIMSPEINHKMDVC---MSVEGQEERASDTNILEDS 1385
             +  E  A    S +SS + E        E      +    +SVE +E+   + +     
Sbjct: 512  DA--EENARAVSSEASSYENEYALAGTLAEFYEAQAMWGREISVEEREKMREEASTARSV 569

Query: 1386 NGSVMVENEL----TSSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGLRMKP 1553
                 VE++L    +  +  +     +E S      +   +T+TDEERF    +GLRMK 
Sbjct: 570  KEVKRVEHKLALAQSKKLKAETLLAKIEASMIPVGPSDDLETITDEERFTFRGIGLRMKA 629

Query: 1554 FLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERV 1733
            +L LG RG+F G++ENMHLHWK+R+LVK+ISK++ L  V +  ++LE ESGGILV++ERV
Sbjct: 630  YLPLGVRGIFDGVIENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVAIERV 689

Query: 1734 SKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLRE 1913
             KGYA+I YRG+ Y+ P  LRPR LLTK  ALK +I  Q+ E+  +HI  L   ++Q+++
Sbjct: 690  PKGYALIYYRGKNYQRPISLRPRNLLTKAKALKRAIAMQRHEALSQHISELESNIDQMKK 749

Query: 1914 YHREDGYEKNGGMLDRKLDCLTGTEMDENTIPLKNNKEE 2030
                    ++G  L         +E  + T P  +++EE
Sbjct: 750  DGSYSEVAEDGKALSLDGKFGHASESSQMTYPDSSDEEE 788


>XP_010678004.1 PREDICTED: CRM-domain containing factor CFM3,
            chloroplastic/mitochondrial [Beta vulgaris subsp.
            vulgaris]
          Length = 826

 Score =  334 bits (857), Expect = 2e-99
 Identities = 216/579 (37%), Positives = 324/579 (55%), Gaps = 38/579 (6%)
 Frame = +3

Query: 408  ISGTELKRLITIGIRLCHVLKLGKGGVTDGFVHGIHQRWSNSEVVKIRCVDDFYKSNMKR 587
            I  +ELKRL   G+ L   + + K G+T   +  IH +W  SE+V+++  +D    +MK 
Sbjct: 221  IEESELKRLRGQGMVLRDKVNVPKAGLTQAVLEKIHTKWRKSELVRLKFHEDL-AHDMKT 279

Query: 588  THRIIEARTGGIIVWRSGSSIVLYRGKDYKRPNTRS------------TNEDATDG---- 719
             H ++E RTGG+++WRSGS +V+YRG +Y+ P ++              NE+AT      
Sbjct: 280  AHILVERRTGGLVLWRSGSVMVVYRGMNYEGPPSKPLADASSVNIAAVNNENATGASIES 339

Query: 720  -----KPSEYF-------VEVDNLSNGLDSLSTDMRGSEPLSQDDEL---PLPGFAYKKP 854
                 KP E+         E ++L + L     D  G+  L  D +L    +PGF  K P
Sbjct: 340  ISSQVKPLEHSRSLTAEEAEYNDLLDCLGPRFVDWWGTGLLPVDGDLLPQTVPGF--KSP 397

Query: 855  LRLIHHGLFCKLTDSEVTCLRRLSPSLPSQFALEKTTDLQKLAASVVKLWDTCEIAKIAV 1034
            LRL+  G+   LT++E+T LR+L+ SLP  FAL +    Q LAA+++KLW+   +AKIAV
Sbjct: 398  LRLLPTGMRLGLTNAELTNLRKLAKSLPCHFALGRNRHHQGLAAAIIKLWEKSLVAKIAV 457

Query: 1035 YPDADKNDVEEMTEELKLLTGGSLISRDKDFIVLYRGKDFLPSSFAAVLAERKALLKGME 1214
                   + + M+EELK LTGG+L+ R+K FIV+YRGKDFLPSS AA + ER+ L K ++
Sbjct: 458  KRGIQNTNNKLMSEELKTLTGGTLLLRNKYFIVIYRGKDFLPSSVAAAVLERQELTKKIQ 517

Query: 1215 KSNLENRAELFPSSSSSKQTENRSCIMSPEINHKMDVC---MSVEGQEERASDTNILEDS 1385
             +  E  A    S +SS + E        E      +    +SVE +E+   + +     
Sbjct: 518  DA--EENARAVSSEASSYENEYALAGTLAEFYEAQAMWGREISVEEREKMREEASTARSV 575

Query: 1386 NGSVMVENEL----TSSVDNDEFCNLLEPSKFSDPSAHGEDTLTDEERFMLTKLGLRMKP 1553
                 VE++L    +  +  +     +E S      +   +T+TDEERF    +GLRMK 
Sbjct: 576  KEVKRVEHKLALAQSKKLKAETLLAKIEASMIPVGPSDDLETITDEERFTFRGIGLRMKA 635

Query: 1554 FLLLGKRGVFAGIVENMHLHWKYRDLVKIISKERKLENVTKAGKILERESGGILVSVERV 1733
            +L LG RG+F G++ENMHLHWK+R+LVK+ISK++ L  V +  ++LE ESGGILV++ERV
Sbjct: 636  YLPLGVRGIFDGVIENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVAIERV 695

Query: 1734 SKGYAIIIYRGRQYRCPSELRPRTLLTKKDALKSSIKAQQIESYDRHIFGLRKTVEQLRE 1913
             KGYA+I YRG+ Y+ P  LRPR LLTK  ALK +I  Q+ E+  +HI  L   ++Q+++
Sbjct: 696  PKGYALIYYRGKNYQRPISLRPRNLLTKAKALKRAIAMQRHEALSQHISELESNIDQMKK 755

Query: 1914 YHREDGYEKNGGMLDRKLDCLTGTEMDENTIPLKNNKEE 2030
                    ++G  L         +E  + T P  +++EE
Sbjct: 756  DGSYSEVAEDGKALSLDGKFGHASESSQMTYPDSSDEEE 794