BLASTX nr result
ID: Ephedra28_contig00030247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00030247
(478 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containi... 61 1e-07
ref|XP_006827122.1| hypothetical protein AMTR_s00010p00246970 [A... 56 4e-06
ref|XP_002509440.1| pentatricopeptide repeat-containing protein,... 56 4e-06
ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago t... 55 7e-06
ref|XP_006467747.1| PREDICTED: pentatricopeptide repeat-containi... 55 1e-05
ref|XP_006449392.1| hypothetical protein CICLE_v10018358mg [Citr... 55 1e-05
ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago t... 55 1e-05
>ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = -3
Query: 416 TAMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALK 237
TAM++ Y+ +G T+E L L+ M+ + PN FTY S+ S + + G+QVH K
Sbjct: 81 TAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAK 140
Query: 236 GGFFSDGFMRSGILDANLE--DLGDVC*VFDEIPRFD 132
G F D F++S ++D +L + D +F E+ R D
Sbjct: 141 GRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKD 177
>ref|XP_006827122.1| hypothetical protein AMTR_s00010p00246970 [Amborella trichopoda]
gi|548831551|gb|ERM94359.1| hypothetical protein
AMTR_s00010p00246970 [Amborella trichopoda]
Length = 749
Score = 56.2 bits (134), Expect = 4e-06
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = -3
Query: 413 AMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALKG 234
AM++ Y +G ++ LY+ M + PNDFT+V +++ S + L GQQ+H +K
Sbjct: 416 AMVSGYAQNGQGEDAFKLYQKMQLKEMKPNDFTFVGLITSASNLAALFHGQQLHNQTIKM 475
Query: 233 GFFSDGFMRSGILD--ANLEDLGDVC*VFDEIPRFD 132
G SD F+ + ++D A ++G+ +F+ +P D
Sbjct: 476 GIESDPFVGNALVDMYAKCGNIGEAWRLFESMPTRD 511
>ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223549339|gb|EEF50827.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 678
Score = 56.2 bits (134), Expect = 4e-06
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = -3
Query: 416 TAMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALK 237
T+MIT Y+ G +E L LY M +I P+ F S+L+ + + +G+QVH LK
Sbjct: 511 TSMITAYSQDGQGEEALKLYLEMQDRKIRPDSFVCSSLLNACANLSAYEQGKQVHVHVLK 570
Query: 236 GGFFSDGFMRSGILD--ANLEDLGDVC*VFDEIP 141
GF SD F + +++ A + D F EIP
Sbjct: 571 FGFISDIFAGNSLVNMYAKCGSIDDADRAFSEIP 604
>ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|358344096|ref|XP_003636129.1| Pentatricopeptide
repeat protein [Medicago truncatula]
gi|355501824|gb|AES83027.1| Pentatricopeptide repeat
protein [Medicago truncatula]
gi|355502064|gb|AES83267.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 662
Score = 55.5 bits (132), Expect = 7e-06
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Frame = -3
Query: 413 AMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALKG 234
+MI+ + + G TKE + LY NM+ ++P+ +T+ +I S + + GQ+ H A+
Sbjct: 71 SMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVL 130
Query: 233 GF-FSDGFMRSGILD--ANLEDLGDVC*VFDEIPRFDAPI*TAEI 108
GF SDGF+ +GI+D A + D VFD + D + TA I
Sbjct: 131 GFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALI 175
>ref|XP_006467747.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Citrus sinensis]
Length = 949
Score = 55.1 bits (131), Expect = 1e-05
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = -3
Query: 416 TAMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALK 237
T+MIT Y GL +E L LY M I P+ F S+L+ + + +G+QVH +K
Sbjct: 546 TSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIK 605
Query: 236 GGFFSDGFMRSGILD--ANLEDLGDVC*VFDEIP 141
GF SD F + +++ A + D F EIP
Sbjct: 606 FGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP 639
>ref|XP_006449392.1| hypothetical protein CICLE_v10018358mg [Citrus clementina]
gi|557552003|gb|ESR62632.1| hypothetical protein
CICLE_v10018358mg [Citrus clementina]
Length = 942
Score = 55.1 bits (131), Expect = 1e-05
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = -3
Query: 416 TAMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALK 237
T+MIT Y GL +E L LY M I P+ F S+L+ + + +G+QVH +K
Sbjct: 539 TSMITAYAQFGLGEEALKLYLEMQDREINPDSFVCSSLLNACANLSAYEQGKQVHVHIIK 598
Query: 236 GGFFSDGFMRSGILD--ANLEDLGDVC*VFDEIP 141
GF SD F + +++ A + D F EIP
Sbjct: 599 FGFMSDTFAGNSLVNMYAKCGSIDDADRAFSEIP 632
>ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355514334|gb|AES95957.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 676
Score = 55.1 bits (131), Expect = 1e-05
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Frame = -3
Query: 413 AMITVYNTSGLTKEELGLYRNMMG*RIMPNDFTYVSILSCISRIDILPRGQQVHPSALKG 234
+MI+ + + G TKE + LY NM+ ++P+ +T+ +I S + + GQ+ H A+
Sbjct: 71 SMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVL 130
Query: 233 GF-FSDGFMRSGILD--ANLEDLGDVC*VFDEIPRFDAPI*TAEI 108
GF SDGF+ +GI+D A + D VFD + D + TA I
Sbjct: 131 GFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALI 175