BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00030184
         (460 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   103   3e-25
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...   103   3e-25
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           102   5e-25
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   102   5e-25
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           100   8e-25
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   105   8e-25
gb|AAY87200.1| reverse transcriptase [Sciadopitys verticillata]       101   8e-25
gb|EOY19734.1| Copia-like retrotransposable element, putative [T...   111   2e-24
emb|CAN83808.1| hypothetical protein VITISV_026963 [Vitis vinifera]   101   5e-24
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    99   6e-24
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   100   6e-24
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...    99   8e-24
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    97   2e-23
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    97   2e-23
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    97   2e-23
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...    98   2e-23
emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]    98   3e-23
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    97   3e-23
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]    97   4e-23
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                   96   4e-23

>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  103 bits (257), Expect(2) = 3e-25
 Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 3/115 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
            TI+I+L LAV +GW +  LDVK+ FLH  LEEEVYM  P G  ++ +    CKL K+LYG
Sbjct: 974  TIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYG 1033

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITS 431
            LKQAPR  Y RL   L + GF+ SK D +L++  +G+   SI L  YVD+II+ S
Sbjct: 1034 LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQV--SIFLLIYVDDIIVAS 1086



 Score = 37.4 bits (85), Expect(2) = 3e-25
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 943  DRYKARLVAKGFKQRYGIDYEDTFSPVVK 971


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1241

 Score =  103 bits (257), Expect(2) = 3e-25
 Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 3/115 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
            TI+I+L LAV +GW +  LDVK+ FLH  LEEEVYM  P G  ++ +    CKL K+LYG
Sbjct: 920  TIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYG 979

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITS 431
            LKQAPR  Y RL   L + GF+ SK D +L++  +G+   SI L  YVD+II+ S
Sbjct: 980  LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQV--SIFLLIYVDDIIVAS 1032



 Score = 37.4 bits (85), Expect(2) = 3e-25
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 889 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 917


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  102 bits (255), Expect(2) = 5e-25
 Identities = 60/123 (48%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
 Frame = +3

Query: 90   IRTIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSL 260
            I TI+++L LAV KGW +  LDVK+ FLH  LEEEVYM  P G V +  S   CKL K+L
Sbjct: 725  ISTIRLVLSLAVSKGWSIRQLDVKNAFLHGILEEEVYMKQPPGYVDKSSSYYVCKLDKAL 784

Query: 261  YGLKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNF 440
            YGLKQAPR  Y RL + L + GF  SK D +L++  +G+    I    YVD+II+ S + 
Sbjct: 785  YGLKQAPRAWYYRLYDKLCQLGFSASKADTSLFFYRKGDV--VIYFLVYVDDIIVVSSSD 842

Query: 441  ELI 449
            + I
Sbjct: 843  QAI 845



 Score = 37.4 bits (85), Expect(2) = 5e-25
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 696 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 724


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
           gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
           Japonica Group]
          Length = 821

 Score =  102 bits (255), Expect(2) = 5e-25
 Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 3/115 (2%)
 Frame = +3

Query: 96  TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
           TI+I+L LAV +GW +  LDVK+ FLH  LEEEVYM  P G  ++ +    CKL K+LYG
Sbjct: 396 TIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYG 455

Query: 267 LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITS 431
           LKQAPR  Y RL   L + GF+ SK D +L++  +G+   SI L  YVD+II+ S
Sbjct: 456 LKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQV--SIFLLIYVDDIIMAS 508



 Score = 37.4 bits (85), Expect(2) = 5e-25
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 365 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 393


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  100 bits (248), Expect(2) = 8e-25
 Identities = 52/123 (42%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQ---GLSCKLRKSLYG 266
            TI+++L +A  KGW +  LDV + FLH  L+E VYM+ P G V Q      C+L K+LYG
Sbjct: 975  TIRLVLDVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSYVCRLTKALYG 1034

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFEL 446
            LKQAPR  +  +  +L   GF  SK DP+L+  T  ++G++++L  YVD+I++T  +  L
Sbjct: 1035 LKQAPRAWFDTISNYLLDFGFSCSKSDPSLF--TYHKNGKTLVLLLYVDDILLTGSDHNL 1092

Query: 447  IKE 455
            ++E
Sbjct: 1093 LQE 1095



 Score = 39.3 bits (90), Expect(2) = 8e-25
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAP 79
            DK KARL+AK FH +EG++Y ETF+P
Sbjct: 944  DKLKARLVAKGFHQEEGLDYLETFSP 969


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 932

 Score =  105 bits (263), Expect(2) = 8e-25
 Identities = 58/121 (47%), Positives = 80/121 (66%), Gaps = 3/121 (2%)
 Frame = +3

Query: 96  TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
           TI+++L +AV KGW +  LDV++ FLH  LEEEVYM  P G   +G     CKL K+LYG
Sbjct: 515 TIRLILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPPGFENKGQPNYLCKLDKALYG 574

Query: 267 LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFEL 446
           LKQAPR  Y RL   L++ GFI SK D +L++  +G  G +I +  YVD+II+ S + E+
Sbjct: 575 LKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKG--GCTIFILVYVDDIIVASSSAEV 632

Query: 447 I 449
           +
Sbjct: 633 V 633



 Score = 33.5 bits (75), Expect(2) = 8e-25
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFA 76
           D+YKARL+AK F  + GI+Y++TF+
Sbjct: 484 DRYKARLVAKGFKQRYGIDYEDTFS 508


>gb|AAY87200.1| reverse transcriptase [Sciadopitys verticillata]
          Length = 148

 Score =  101 bits (251), Expect(2) = 8e-25
 Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
 Frame = +3

Query: 96  TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQG---LSCKLRKSLYG 266
           T ++LL +A + GW+VF +DVKS FL+ +L+EEVYM  P G  + G   L C+L KSLYG
Sbjct: 34  TFRLLLSMAAQFGWKVFQMDVKSAFLNGDLDEEVYMTQPEGFQETGSEHLVCRLVKSLYG 93

Query: 267 LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDN 437
           LKQAPR  Y ++   LK  GF  S  DPNL+  +  +S   ++L  YVD+++I + N
Sbjct: 94  LKQAPRAWYIKIDAHLKDSGFRRSMSDPNLYVKSTEDS--IVILVVYVDDVVIATGN 148



 Score = 38.1 bits (87), Expect(2) = 8e-25
 Identities = 16/28 (57%), Positives = 24/28 (85%)
 Frame = +2

Query: 5  KYKARLLAKEFH*KEGINYKETFAPTKK 88
          +YKARL+AK +  +EG++++ETFAPT K
Sbjct: 4  RYKARLVAKGYLQQEGVDFEETFAPTAK 31


>gb|EOY19734.1| Copia-like retrotransposable element, putative [Theobroma cacao]
          Length = 1207

 Score =  111 bits (277), Expect(2) = 2e-24
 Identities = 55/124 (44%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
            TI++L+ L  K+ W+++HLDVKS FL+  LEE++++  P G ++ G+    CKL+K+LYG
Sbjct: 784  TIRLLVALVAKEKWKLWHLDVKSAFLNGLLEEDIFIEQPKGFIEPGMENRICKLKKALYG 843

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFEL 446
            LKQAPR  Y R+  +L  KGF MS+  P L Y+    +G+ ++++ YVD+I++TS N EL
Sbjct: 844  LKQAPRAWYARVDNYLCNKGFHMSESKPTL-YVCCSSAGKQVIVSIYVDDILVTSLNTEL 902

Query: 447  IKEF 458
            + +F
Sbjct: 903  LLKF 906



 Score = 26.9 bits (58), Expect(2) = 2e-24
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           +K KARL+ K +   +GI Y ET AP  +
Sbjct: 753 NKLKARLVVKGYAQIQGIGYLETSAPVAR 781


>emb|CAN83808.1| hypothetical protein VITISV_026963 [Vitis vinifera]
          Length = 971

 Score =  101 bits (251), Expect(2) = 5e-24
 Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
 Frame = +3

Query: 90   IRTIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCV---QQGLSCKLRKSL 260
            + +I++LL +AV   W +  LDVK+ FL+R LEEEVYM  P         G  CKLRKSL
Sbjct: 679  LNSIRVLLSVAVNLDWNLHQLDVKNAFLNRELEEEVYMKIPPSMETLENSGKVCKLRKSL 738

Query: 261  YGLKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNF 440
            YGLKQ+PR  + RL   +KK GFI  + D  L ++   + G   L   YVD+IIIT D+ 
Sbjct: 739  YGLKQSPRAWFDRLTRVVKKHGFIQCQADHTL-FMKHSKEGEMTLFIVYVDDIIITGDDE 797

Query: 441  ELI 449
            E I
Sbjct: 798  EEI 800



 Score = 35.4 bits (80), Expect(2) = 5e-24
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           +++KARL+AK F    GI+Y+ETFAP  K
Sbjct: 650 NRFKARLVAKGFTQSYGIDYEETFAPVAK 678


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score = 99.0 bits (245), Expect(2) = 6e-24
 Identities = 58/121 (47%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQ---GLSCKLRKSLYG 266
            TI+I+L +AV +GW +  LDV++ FLH  LEEEVYM  P G   +   G  CKL K+LYG
Sbjct: 1028 TIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYG 1087

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFEL 446
            LKQAPR  Y RL + L   GF  SK D +L++  +G  G  I +  YVD+II+TS   E 
Sbjct: 1088 LKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKG--GLIIFVLIYVDDIIVTSSRQEA 1145

Query: 447  I 449
            +
Sbjct: 1146 V 1146



 Score = 37.4 bits (85), Expect(2) = 6e-24
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 997  DRYKARLVAKGFKQRYGIDYEDTFSPVVK 1025


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  100 bits (249), Expect(2) = 6e-24
 Identities = 51/124 (41%), Positives = 83/124 (66%), Gaps = 3/124 (2%)
 Frame = +3

Query: 96  TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
           TI+++L +A ++ W++F LDVKS FL+  LEEE+Y   P G  ++G      +L K+LYG
Sbjct: 553 TIRLILVVAAQRKWKLFQLDVKSAFLNGTLEEEIYAEQPLGFEEEGKEDHVLRLHKALYG 612

Query: 267 LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFEL 446
           LKQAPR  Y R+ EF +++ F  S +D  L+  T+   G+ +++  YVD++I+T D+ E+
Sbjct: 613 LKQAPRAWYSRIDEFFQRENFTRSDNDHALY--TKEVLGKLLVVCIYVDDLIVTGDDEEM 670

Query: 447 IKEF 458
           ++EF
Sbjct: 671 VEEF 674



 Score = 35.8 bits (81), Expect(2) = 6e-24
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +2

Query: 5   KYKARLLAKEFH*KEGINYKETFAPTKKYK 94
           K+KARL+AK F  + G++Y ETFAP  +++
Sbjct: 523 KHKARLVAKGFTQQHGVDYLETFAPVSRHE 552


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score = 98.6 bits (244), Expect(2) = 8e-24
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
            TI+I+L +AV KGW +  LDV++ FLH  LEEEVYM  P G     L    CKL K+LYG
Sbjct: 828  TIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYG 887

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFEL 446
            LKQAPR  Y RL + L   GF  SK D +L++  +G+    I +  YVD+II+TS   E 
Sbjct: 888  LKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGD--LIIFVLIYVDDIIVTSSRQEA 945

Query: 447  I 449
            +
Sbjct: 946  V 946



 Score = 37.4 bits (85), Expect(2) = 8e-24
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 797 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 825


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 97.1 bits (240), Expect(2) = 2e-23
 Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGC---VQQGLSCKLRKSLYG 266
            TI+I+L LAV KGW +  LDV++ FLH  LEEEVYM+ P G     +    CKL K+LYG
Sbjct: 756  TIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYG 815

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDN 437
            LKQAPR  + RL + L   GF  SK D +L++L +G+    +L+  YVD+II+ S +
Sbjct: 816  LKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLV--YVDDIIVASSS 870



 Score = 37.4 bits (85), Expect(2) = 2e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 725 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 753


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score = 97.1 bits (240), Expect(2) = 2e-23
 Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGC---VQQGLSCKLRKSLYG 266
            TI+I+L LAV KGW +  LDV++ FLH  LEEEVYM+ P G     +    CKL K+LYG
Sbjct: 1027 TIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYG 1086

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDN 437
            LKQAPR  + RL + L   GF  SK D +L++L +G+    +L+  YVD+II+ S +
Sbjct: 1087 LKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGDITMFVLV--YVDDIIVASSS 1141



 Score = 37.4 bits (85), Expect(2) = 2e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 996  DRYKARLVAKGFKQRYGIDYEDTFSPVVK 1024


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score = 97.1 bits (240), Expect(2) = 2e-23
 Identities = 56/117 (47%), Positives = 76/117 (64%), Gaps = 3/117 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGC---VQQGLSCKLRKSLYG 266
            TI+I+L LAV KGW +  LDV++ FLH  LEEEVYM+ P G     +    CKL K+LYG
Sbjct: 1034 TIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYG 1093

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDN 437
            LKQAPR  + RL + L   GF  SK D +L++L +G+    +L+  YVD+II+ S +
Sbjct: 1094 LKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLV--YVDDIIVASSS 1148



 Score = 37.4 bits (85), Expect(2) = 2e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 1003 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 1031


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score = 98.2 bits (243), Expect(2) = 2e-23
 Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS---CKLRKSLYG 266
            TI+I+L +AV +GW +  LDV+++FLH  LEEEVYM  P G          CKL K+LYG
Sbjct: 1029 TIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYG 1088

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITS 431
            LKQAPR  Y RL + L + GF  SK D +L++L +G  G  + +  YVD+II+ S
Sbjct: 1089 LKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKG--GIIMFVLVYVDDIIVAS 1141



 Score = 36.2 bits (82), Expect(2) = 2e-23
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            D+YK RL+AK F  + GI+Y++TF+P  K
Sbjct: 998  DRYKTRLIAKGFKQRYGIDYEDTFSPVVK 1026


>emb|CAN76196.1| hypothetical protein VITISV_041073 [Vitis vinifera]
          Length = 1505

 Score = 98.2 bits (243), Expect(2) = 3e-23
 Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
 Frame = +3

Query: 90   IRTIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQGLS--CKLRKSLY 263
            + T+++LL +A    W +  LDVK+ FL+ NLEEEVYM  P G  +   S  CKL+KSLY
Sbjct: 1082 LNTVRVLLSIAANLDWPLQQLDVKNAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLY 1141

Query: 264  GLKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDN 437
            GLKQ+PR  ++R  +F+K +G++ ++ D  + ++     G+  +L  YVD+II+T D+
Sbjct: 1142 GLKQSPRAWFERFTQFVKNQGYVQAQSDHTM-FIKHSNDGKIAILIVYVDDIILTGDH 1198



 Score = 35.8 bits (81), Expect(2) = 3e-23
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            ++YKARL+AK F    GI+Y ETFAP  K
Sbjct: 1053 ERYKARLVAKGFTQTYGIDYLETFAPVAK 1081


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score = 96.7 bits (239), Expect(2) = 3e-23
 Identities = 52/117 (44%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQ-GLSCKLRKSLYGLK 272
            TI+ +L +A+ +GW +  LDV++ FLH  LEE+V+M  P G  Q+ G  CKL K+LYGLK
Sbjct: 875  TIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVCKLDKALYGLK 934

Query: 273  QAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFE 443
            QAPR  Y RL   L + GF  SK D +L++ ++G+   +I +  YVD+II+ S + +
Sbjct: 935  QAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDV--TIFMLVYVDDIIVASSSID 989



 Score = 37.4 bits (85), Expect(2) = 3e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   DKYKARLLAKEFH*KEGINYKETFAPTKK 88
           D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 844 DRYKARLVAKGFKQRYGIDYEDTFSPVVK 872


>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
          Length = 1813

 Score = 97.1 bits (240), Expect(2) = 4e-23
 Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = +3

Query: 90   IRTIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCVQQG--LSCKLRKSLY 263
            + T++ LL +A  + W +  LDV + FLH NL+EEVYM  P G  +QG  L C+LRKS+Y
Sbjct: 1307 LTTLRCLLTVAASRNWYIHQLDVHNAFLHGNLQEEVYMTPPPGLRRQGENLVCRLRKSIY 1366

Query: 264  GLKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITSDNFE 443
            GLKQA R  +      +K  G+I SK D +L+  ++G    +IL+  YVD+I++T ++  
Sbjct: 1367 GLKQASRNWFSTFTATVKSAGYIQSKADYSLFTKSQGNKFTAILI--YVDDILLTGNDLH 1424

Query: 444  LIK 452
             IK
Sbjct: 1425 EIK 1427



 Score = 36.6 bits (83), Expect(2) = 4e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            ++YKARL+AK +    GI+Y+ETF+PT K
Sbjct: 1278 ERYKARLVAKGYTQVAGIDYQETFSPTAK 1306


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 96.3 bits (238), Expect(2) = 4e-23
 Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
 Frame = +3

Query: 96   TIKILLKLAVKKGWEVFHLDVKSEFLHRNLEEEVYMV*PSGCV---QQGLSCKLRKSLYG 266
            TI+I+L +AV +GW +  LDV++ FLH  LEEEVYM  P G     +    CKL K+LYG
Sbjct: 1017 TIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYG 1076

Query: 267  LKQAPRTQYKRLIEFLKKKGFIMSKHDPNLWYLTEGESGRSILLAFYVDNIIITS 431
            LKQAPR  Y RL + L + GF  SK D +L++L +G  G  + +  YVD+III S
Sbjct: 1077 LKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKG--GIIMFVLVYVDDIIIAS 1129



 Score = 37.4 bits (85), Expect(2) = 4e-23
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 2    DKYKARLLAKEFH*KEGINYKETFAPTKK 88
            D+YKARL+AK F  + GI+Y++TF+P  K
Sbjct: 986  DRYKARLVAKGFKQRYGIDYEDTFSPVVK 1014