BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029723
         (467 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsu...   153   3e-35
ref|XP_002329779.1| predicted protein [Populus trichocarpa] gi|5...   151   8e-35
ref|XP_004492962.1| PREDICTED: pentatricopeptide repeat-containi...   151   1e-34
ref|XP_002305798.2| pentatricopeptide repeat-containing family p...   150   2e-34
gb|EMJ14405.1| hypothetical protein PRUPE_ppb012387mg [Prunus pe...   150   2e-34
ref|XP_004505055.1| PREDICTED: pentatricopeptide repeat-containi...   149   3e-34
ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selag...   149   4e-34
ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Sela...   149   4e-34
ref|XP_002301860.2| pentatricopeptide repeat-containing family p...   148   6e-34
ref|XP_002519063.1| pentatricopeptide repeat-containing protein,...   147   1e-33
gb|EMJ08834.1| hypothetical protein PRUPE_ppa021864mg [Prunus pe...   147   2e-33
gb|EOY28251.1| Pentatricopeptide repeat superfamily protein [The...   145   4e-33
ref|XP_006847845.1| hypothetical protein AMTR_s00029p00062590 [A...   145   5e-33
ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containi...   145   7e-33
ref|XP_003550640.2| PREDICTED: pentatricopeptide repeat-containi...   144   2e-32
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   143   2e-32
ref|XP_002532374.1| basic helix-loop-helix-containing protein, p...   143   2e-32
ref|XP_006344817.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32
emb|CBI15551.3| unnamed protein product [Vitis vinifera]              142   3e-32
ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32

>gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227463002|gb|ACP39953.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 592

 Score =  153 bits (386), Expect = 3e-35
 Identities = 75/155 (48%), Positives = 104/155 (67%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN+MI  + QNGF  EA  +F  M +LG +KPD +TF ++LS C  +G +  G  VH  +
Sbjct: 187 WNSMISGYEQNGFGKEAVELFFLMQDLG-VKPDSSTFVSLLSACAQVGAIGLGFWVHEYI 245

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
            R+ F   V +   L++MYS+CGN+  A  VF SM+EKN++ W  MI+GY  HG  ++A 
Sbjct: 246 ARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAI 305

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF+EMS +G +PN+ TFVA+LSAC H GLVD+GR
Sbjct: 306 ELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGR 340



 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 51/154 (33%), Positives = 82/154 (53%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           ++++I    +  F  E+ + ++RM+       +Y TF+ V+    D+     G+ +H  V
Sbjct: 86  FHSLITLTSKFSFPQESLLCYRRMLLANISSSNY-TFSAVIKSSADLTAFSIGETIHCHV 144

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
               +     V   L+  Y++ G++  A  VF  M EK V+ WN+MI+GY  +GF  EA 
Sbjct: 145 YICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAV 204

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            LF  M   G+KP+S+TFV+LLSAC   G +  G
Sbjct: 205 ELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLG 238


>ref|XP_002329779.1| predicted protein [Populus trichocarpa]
           gi|566193824|ref|XP_006377358.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
           gi|550327646|gb|ERP55155.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
          Length = 585

 Score =  151 bits (382), Expect = 8e-35
 Identities = 75/155 (48%), Positives = 103/155 (66%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN+MI  + QNGF+ EA  +F RM E G ++PD ATF +VLS C  +G    G  VH  +
Sbjct: 180 WNSMISGYEQNGFAKEAIGLFDRMKETG-VEPDSATFVSVLSACAHLGAFSLGCWVHEYI 238

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           + +     V +   LI+MY +CGN+  A  VF SM+E+NV+ W  MI+GY T+G+ ++A 
Sbjct: 239 VGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAV 298

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF EM +NG+ PNS TFVA+LSAC H GLV++GR
Sbjct: 299 ELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGR 333



 Score =  122 bits (307), Expect = 4e-26
 Identities = 60/144 (41%), Positives = 90/144 (62%)
 Frame = +3

Query: 33  NGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSVLRHRFHCLVS 212
           + FS+ +   + RM+ L  + P   TF +V+  C D+  L+ G+ VHG VL H F   V 
Sbjct: 89  HNFSIYSLYFYSRMV-LSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVY 147

Query: 213 VSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEACLLFDEMSKNG 392
           V   L+ +Y +CG+L  A  VF  ++E++++ WN+MI+GY  +GFA EA  LFD M + G
Sbjct: 148 VQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG 207

Query: 393 IKPNSATFVALLSACRHGGLVDKG 464
           ++P+SATFV++LSAC H G    G
Sbjct: 208 VEPDSATFVSVLSACAHLGAFSLG 231


>ref|XP_004492962.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Cicer arietinum]
          Length = 512

 Score =  151 bits (381), Expect = 1e-34
 Identities = 70/155 (45%), Positives = 104/155 (67%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W  +I  F Q   +     +F +M +L  LKP+Y T+ ++LS C+  G L  G+ VH  +
Sbjct: 186 WTAIIAGFAQEWRADMCLELFHKMRDL-ELKPNYFTYTSLLSACMGSGALGHGRGVHCQI 244

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           ++  FHC + V N LI MYS+CG +D AL +F++M  ++V+TWN+MI GYA HG A EA 
Sbjct: 245 IQTGFHCYLHVYNALIAMYSKCGAIDDALYIFENMVNRDVVTWNSMIVGYAHHGLAQEAI 304

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF+EM+K G+ P++ TF+ +LS+CRHGGLV +G+
Sbjct: 305 SLFEEMTKQGVNPDAVTFLGILSSCRHGGLVKEGQ 339



 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 45/123 (36%), Positives = 61/123 (49%)
 Frame = +3

Query: 99  DYATFANVLSVCVDMGGLQQGKEVHGSVLRHRFHCLVSVSNCLIHMYSQCGNLDYALGVF 278
           D    +  LS C     L  G + H   +   F   V V   LI +YS+CG L  A  VF
Sbjct: 116 DVCFLSLALSSCGSKRDLYGGIQYHCLAITTGFIANVYVGTSLISLYSRCGLLGDAYRVF 175

Query: 279 QSMQEKNVITWNTMIAGYATHGFANEACLLFDEMSKNGIKPNSATFVALLSACRHGGLVD 458
             M E+NV++W  +IAG+A    A+    LF +M    +KPN  T+ +LLSAC   G + 
Sbjct: 176 DEMSERNVVSWTAIIAGFAQEWRADMCLELFHKMRDLELKPNYFTYTSLLSACMGSGALG 235

Query: 459 KGR 467
            GR
Sbjct: 236 HGR 238


>ref|XP_002305798.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550340302|gb|EEE86309.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 591

 Score =  150 bits (378), Expect = 2e-34
 Identities = 74/155 (47%), Positives = 104/155 (67%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN+MI  + QNGF+ EA  +F RM E+G ++P+ ATF +VLS C  +G    G  VH   
Sbjct: 180 WNSMISGYEQNGFAKEAIRLFDRMKEIG-VEPNSATFVSVLSACAHLGAFILGCWVHEYA 238

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           + +     V +   LI+MY++CGN+  A  VF SM+E+NV+ W  MI+GY T+G+ ++A 
Sbjct: 239 VGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAV 298

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF EM +NG+ PNS TFVA+LSAC H GLV++GR
Sbjct: 299 ELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGR 333



 Score =  118 bits (296), Expect = 7e-25
 Identities = 60/139 (43%), Positives = 88/139 (63%)
 Frame = +3

Query: 33  NGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSVLRHRFHCLVS 212
           + FS+ +   + RM+ L  + P   TF +V+  C D+  L+ G+ +HG VL + F   V 
Sbjct: 89  HNFSVYSLYFYTRMV-LSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVY 147

Query: 213 VSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEACLLFDEMSKNG 392
           V   L+  Y +CG L  A  VF  M++++V+TWN+MI+GY  +GFA EA  LFD M + G
Sbjct: 148 VQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIG 207

Query: 393 IKPNSATFVALLSACRHGG 449
           ++PNSATFV++LSAC H G
Sbjct: 208 VEPNSATFVSVLSACAHLG 226


>gb|EMJ14405.1| hypothetical protein PRUPE_ppb012387mg [Prunus persica]
          Length = 588

 Score =  150 bits (378), Expect = 2e-34
 Identities = 75/155 (48%), Positives = 102/155 (65%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN+MI  + QNGFS EA  +F +M ELG ++PD  TF +VL+ C  +G L  G  VH  V
Sbjct: 183 WNSMISGYEQNGFSREAIEVFNQMRELG-VEPDSTTFVSVLAACSQLGALGLGCSVHHDV 241

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           + +  H  V++   LI MY++CGN+  A  VF SM E+NVI W  MI+GYAT+G+  +A 
Sbjct: 242 INNGLHVNVALGTSLIIMYARCGNVSKAREVFDSMNERNVIAWTAMISGYATNGYGIQAV 301

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF +M  +G  PN+ TFVA+L+AC H GLV +GR
Sbjct: 302 ELFCQMRAHGPVPNTVTFVAVLAACAHAGLVHEGR 336



 Score =  101 bits (252), Expect = 9e-20
 Identities = 53/154 (34%), Positives = 90/154 (58%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           +N++I A  + GF       + RM+    + P   +F +V+  C D+  L+ G+ VH  V
Sbjct: 82  FNSLIKASSKFGFPQHTVFFYNRMLGF-RIAPSSYSFTSVIKSCADISALRLGRCVHSHV 140

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           L   +     V   L+ +YS+ G+LD A  +F  M E++V+ WN+MI+GY  +GF+ EA 
Sbjct: 141 LVCGYGSDSFVQAALVTLYSKSGDLDAARKLFDKMPERSVVAWNSMISGYEQNGFSREAI 200

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            +F++M + G++P+S TFV++L+AC   G +  G
Sbjct: 201 EVFNQMRELGVEPDSTTFVSVLAACSQLGALGLG 234


>ref|XP_004505055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cicer arietinum]
          Length = 587

 Score =  149 bits (377), Expect = 3e-34
 Identities = 77/156 (49%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WNTMI  + QNG + EA  +F++M ELG L+PD ATF +V S C  +G L+ G  VH S+
Sbjct: 181 WNTMISGYDQNGLANEAMTLFRKMNELG-LRPDSATFVSVSSACSQIGSLELGCWVHDSI 239

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           + +     V +   LI+M+S+CG++  A  VF SM E NVI W  MI+GY  HG+  EA 
Sbjct: 240 VSNGIRVNVILGTSLINMFSRCGDVSRARAVFDSMSEGNVIAWTAMISGYGMHGYGVEAM 299

Query: 363 LLFDEMSK-NGIKPNSATFVALLSACRHGGLVDKGR 467
            LF +M K NG+ PNS TFVA+LSAC H GL+ +GR
Sbjct: 300 ELFYKMKKENGLVPNSVTFVAVLSACAHAGLIREGR 335



 Score =  103 bits (256), Expect = 3e-20
 Identities = 56/154 (36%), Positives = 86/154 (55%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           +N++I A  Q GFSL+    + RM+     KP   TF +V   C  +  L+ G  +H  V
Sbjct: 80  FNSLIKASSQYGFSLDTLFFYNRML-FSPSKPCSYTFTSVFKACAHLSNLRLGTLLHSHV 138

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
               +     V   +I  Y++   L  A  VF  M +++V+ WNTMI+GY  +G ANEA 
Sbjct: 139 FVSGYSSNPFVQAAIIAFYAKSSALSIARKVFDKMPQRSVVAWNTMISGYDQNGLANEAM 198

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            LF +M++ G++P+SATFV++ SAC   G ++ G
Sbjct: 199 TLFRKMNELGLRPDSATFVSVSSACSQIGSLELG 232


>ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
           gi|300164291|gb|EFJ30900.1| hypothetical protein
           SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  149 bits (376), Expect = 4e-34
 Identities = 71/154 (46%), Positives = 97/154 (62%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN MI A+ Q+G   +A  +++ M +   L P   TF  V+ VC ++  L+QG+ +H  V
Sbjct: 265 WNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARV 324

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
               F   + VSN L+HMY +CG LD AL VF SM+ K+ I+WNT+I+ YA HG +++A 
Sbjct: 325 RATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQAL 384

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
           LL+ EM   G+KP   TFV LLSAC HGGLV  G
Sbjct: 385 LLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADG 418



 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGG--LQQGKEVHG 176
           W   + AF  NG   EA V F+RM + G  +PD  TF+ +L+    MG   + QG+E+H 
Sbjct: 131 WTVAMAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAIDQGREIHR 189

Query: 177 SVLRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANE 356
                     V V   +I MY +CG LD A   F+ +Q KN +TWN M+  Y   G   E
Sbjct: 190 YARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDRE 249

Query: 357 ACLLFDEM 380
           A  LF EM
Sbjct: 250 ALELFREM 257



 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
 Frame = +3

Query: 21  AFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSVLR--HR 194
           +FG+   SL  S+   +++E   L+ D   +A ++  C     +   + +H  +L   H 
Sbjct: 37  SFGERE-SLHKSI---QLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHS 92

Query: 195 FHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEACLLFD 374
                 ++N LI MY +CG L YA  +F+SM  +NV TW   +A ++ +G  +EA + F 
Sbjct: 93  NSQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFR 152

Query: 375 EMSKNGIKPNSATFVALLSACRHGG--LVDKGR 467
            M ++G +P+  TF  +L+A    G   +D+GR
Sbjct: 153 RMYQSGERPDRVTFSVILAAIAQMGAAAIDQGR 185


>ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
           gi|300150622|gb|EFJ17272.1| hypothetical protein
           SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  149 bits (376), Expect = 4e-34
 Identities = 71/154 (46%), Positives = 97/154 (62%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN MI A+ Q+G   +A  +++ M +   L P   TF  V+ VC ++  L+QG+ +H  V
Sbjct: 206 WNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARV 265

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
               F   + VSN L+HMY +CG LD AL VF SM+ K+ I+WNT+I+ YA HG +++A 
Sbjct: 266 RATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQAL 325

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
           LL+ EM   G+KP   TFV LLSAC HGGLV  G
Sbjct: 326 LLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADG 359



 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 5/160 (3%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELG-ALKPDYATFANVLSVCVDMGGLQQGKEVHGS 179
           WN M+  +  +G   EA  +F+ M E   + +PD  +F+  +  C ++  L+QG+E+H  
Sbjct: 100 WNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEM 159

Query: 180 VLRH--RFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQ-EKNVITWNTMIAGYATHGFA 350
           + R     H  V V   L++MYS+CG+L+ A  VF S++ + + + WN MIA YA HG  
Sbjct: 160 LRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRG 219

Query: 351 NEACLLFDEM-SKNGIKPNSATFVALLSACRHGGLVDKGR 467
            +A  L+  M     + P   TFV ++  C     + +GR
Sbjct: 220 KQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGR 259



 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
 Frame = +3

Query: 15  IGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGG--LQQGKEVHGSVLR 188
           + AF  NG   EA V F+RM + G  +PD  TF+ +L+    MG   + QG+E+H     
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAIDQGREIHRYARI 59

Query: 189 HRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEACLL 368
                 V V   +I MY +CG LD A   F+ +Q KN +TWN M+  Y   G   EA  L
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 369 FDEMSK--NGIKPNSATFVALLSACRHGGLVDKGR 467
           F EM +     +P+  +F   + AC +   +++GR
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGR 154


>ref|XP_002301860.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550345843|gb|EEE81133.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 933

 Score =  148 bits (374), Expect = 6e-34
 Identities = 69/155 (44%), Positives = 101/155 (65%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W TMI  + QN    EA  +F  M + G + PD  T A V+S C  +G L  GKE+H  +
Sbjct: 211 WTTMINCYSQNKRFREALGVFNEMAKHG-ISPDEVTMATVISACAHLGALDLGKEIHYYI 269

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           ++H F+  V + + LI MY++CG+LD +L +F  ++EKN+  WN++I G A HG+A EA 
Sbjct: 270 MQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEAL 329

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            +FD+M +  IKPN  TFV++LSAC H GL+++GR
Sbjct: 330 AMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGR 364



 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 62/217 (28%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           +N MI  F Q+   ++A  ++ +M+        Y TF +++  C  +  L+  + VHG V
Sbjct: 48  YNAMIKGFVQSYQPVQALELYVQMLRANVSPTSY-TFPSLIKACGLVSQLRFAEAVHGHV 106

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQS-------------------------- 284
            R+ F   V V   L+  YS  G ++ ++ VF                            
Sbjct: 107 WRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAG 166

Query: 285 -----MQEKNVITWNTMIAGYATHGFANEACLLFD------------------------- 374
                M ++N+ TWNT+I GYA     + A LLF+                         
Sbjct: 167 RLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFRE 226

Query: 375 ------EMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
                 EM+K+GI P+  T   ++SAC H G +D G+
Sbjct: 227 ALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGK 263



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN++I     +G++ EA  +F +M E   +KP+  TF +VLS C   G +++G++   S+
Sbjct: 312 WNSVIEGLAVHGYAEEALAMFDKM-EREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASM 370

Query: 183 LR-HRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQ-EKNVITWNTMIAGYATH 341
            R H     V    C++ + S+ G L+ AL + ++M+ E N + W  +++G   H
Sbjct: 371 TRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLH 425


>ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541726|gb|EEF43274.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 386

 Score =  147 bits (371), Expect = 1e-33
 Identities = 75/154 (48%), Positives = 97/154 (62%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN++I  + QNGF  EA  +F++M E G  +PD ATF  VLS C  +G L  G  VH   
Sbjct: 180 WNSIISGYEQNGFGREAIRLFKKMREEG-FEPDSATFVIVLSACAQLGALSMGCWVHKYT 238

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           + H     V +   LI+MY++CG +  A  VF SM+EKNV+TW  MI+GY T+G   +A 
Sbjct: 239 IGHGLDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAV 298

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            LFDEM + G  PNS TFVA+LSAC H GLV +G
Sbjct: 299 QLFDEMKRRGPCPNSVTFVAVLSACAHAGLVKEG 332



 Score =  107 bits (268), Expect = 1e-21
 Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
 Frame = +3

Query: 3   WNTMIGAFGQ-NGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGS 179
           +NT+I +  + + FS+  S+ F   + L  + P   TF +++  C D+  L+ GK VHG 
Sbjct: 78  FNTLIKSTSKFHKFSIY-SLFFYNCMLLSDISPSAYTFTSIVKSCADLSSLKLGKVVHGH 136

Query: 180 VLRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEA 359
           VL + F   V V   L+  Y++ G+L  A  VF  M+E++V++WN++I+GY  +GF  EA
Sbjct: 137 VLVNGFGLDVYVQAALVACYAKSGDLGNARKVFDKMRERSVVSWNSIISGYEQNGFGREA 196

Query: 360 CLLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
             LF +M + G +P+SATFV +LSAC   G +  G
Sbjct: 197 IRLFKKMREEGFEPDSATFVIVLSACAQLGALSMG 231


>gb|EMJ08834.1| hypothetical protein PRUPE_ppa021864mg [Prunus persica]
          Length = 748

 Score =  147 bits (370), Expect = 2e-33
 Identities = 68/155 (43%), Positives = 102/155 (65%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WNTMI ++   G S EA  +F++MI +   KP+ AT   VLS C  +  L +G+++H  +
Sbjct: 474 WNTMISSYTHAGHSAEAIALFEKMIAVN-FKPNSATLVTVLSACSHLASLGEGEKIHSHI 532

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
              R    +S++  L+ MY++CG L+ +  +F SM+E++VI+WN MI+GYATHG A  A 
Sbjct: 533 KERRLEINLSLATALVDMYAKCGQLEKSRELFDSMEERDVISWNVMISGYATHGHAEPAL 592

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            +F +M  + IKPN  TF+ALLSAC H GLV++G+
Sbjct: 593 EIFRKMENSNIKPNELTFLALLSACNHSGLVEEGK 627



 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 41/108 (37%), Positives = 64/108 (59%)
 Frame = +3

Query: 141 MGGLQQGKEVHGSVLRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTM 320
           +G +  G+ +H  +++      +SV+N L+ MY + G+L  A  +F   Q +++ITWNTM
Sbjct: 419 LGAIHLGRSLHCYLIKVSMDENISVANSLLDMYGKSGHLKIARRIFSGTQ-RDIITWNTM 477

Query: 321 IAGYATHGFANEACLLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
           I+ Y   G + EA  LF++M     KPNSAT V +LSAC H   + +G
Sbjct: 478 ISSYTHAGHSAEAIALFEKMIAVNFKPNSATLVTVLSACSHLASLGEG 525



 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGAL--KPDYATFANVLSVCVDMGGLQQGKEVHG 176
           W  +I  + QN    +       M  +G    +P++ T    L  C D+G L +GK +HG
Sbjct: 200 WTALIIGYVQNDEIEKGLECLCEMHRVGGSDERPNFRTLEVGLQACGDLGTLVEGKCLHG 259

Query: 177 SVLRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANE 356
            V++    C  +V + L+ MYS+CG    +   F  +++K++++W ++I  YA  G  +E
Sbjct: 260 FVVKSGIGCSEAVKSLLLSMYSRCGVPGESYLSFCEIKDKDLLSWTSVIGVYARSGLMDE 319

Query: 357 ACLLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
              LF  M  + I P+      +LS  ++   +++G+
Sbjct: 320 CLSLFQGMQVSDIFPDEIVVNCMLSGFKNSTTINEGK 356



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN++I     NG   +A   F +M  LG   P   T   V++ C ++  L+ G  VHG  
Sbjct: 98  WNSIIKTHFSNGDYSKALDFFFQMRALG-FAPTQFTLPMVVASCAELMLLEHGNNVHGLA 156

Query: 183 LR-HRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEA 359
           L+   F    +V +  ++MYS+CG ++ A  +F+    ++V+ W  +I GY  +    + 
Sbjct: 157 LKLGLFSGNSAVGSSFVYMYSKCGRMEDAYFMFEETTVRDVVCWTALIIGYVQNDEIEKG 216

Query: 360 CLLFDEMSKNG---IKPNSATFVALLSACRHGGLVDKGR 467
                EM + G    +PN  T    L AC   G + +G+
Sbjct: 217 LECLCEMHRVGGSDERPNFRTLEVGLQACGDLGTLVEGK 255


>gb|EOY28251.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
          Length = 905

 Score =  145 bits (367), Expect = 4e-33
 Identities = 73/155 (47%), Positives = 98/155 (63%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN+MI  + QNGF  EA  +F  M + G +KPD  TF  +LS C  +G    G  VH  +
Sbjct: 500 WNSMISGYEQNGFGKEAVGLFYLMQDSG-VKPDSTTFVCLLSACAQLGAAGLGCWVHEYI 558

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           +R+ F   V +   LI+MYS+CGN+  A   F SM+EKNV+ W  MI+GY  HG  ++A 
Sbjct: 559 VRNCFDVNVVLGTALINMYSRCGNVSKAREAFDSMEEKNVVAWTAMISGYGMHGHGSQAI 618

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF EM  +G +PN+ TFVA+LSAC H GLV++GR
Sbjct: 619 ELFSEMRVHGPRPNNVTFVAILSACAHAGLVNEGR 653



 Score =  101 bits (252), Expect = 9e-20
 Identities = 59/154 (38%), Positives = 82/154 (53%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           ++++I    +  F LE+ V  +RMI    + P   TF+ V+  C D+     GK VH  V
Sbjct: 399 FHSLITLTSKFNFPLESLVCHRRMISAN-ISPSNYTFSAVVKCCTDLMAFNIGKTVHCQV 457

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           L   +     V   L+  Y++ G+L  A  VF  M EK V+ WN+MI+GY  +GF  EA 
Sbjct: 458 LSCGYGLDSYVQAALVSFYAKSGDLGVARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAV 517

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            LF  M  +G+KP+S TFV LLSAC   G    G
Sbjct: 518 GLFYLMQDSGVKPDSTTFVCLLSACAQLGAAGLG 551


>ref|XP_006847845.1| hypothetical protein AMTR_s00029p00062590 [Amborella trichopoda]
           gi|548851150|gb|ERN09426.1| hypothetical protein
           AMTR_s00029p00062590 [Amborella trichopoda]
          Length = 625

 Score =  145 bits (366), Expect = 5e-33
 Identities = 70/154 (45%), Positives = 96/154 (62%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN MI    QNGFS +A  +F++M+     KP++ T  N+L  C  +  L  GKE+HG  
Sbjct: 315 WNGMIAGCNQNGFSNKALDLFRKMVVTFPRKPNWVTLVNLLPSCAKLSALLHGKEIHGFS 374

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           +++  H    V N LI MYS+CG+L+ A  VF  M E++VITW  MIAGY  HG   +A 
Sbjct: 375 VKNHIHWDTIVCNALIDMYSKCGSLELARRVFDRMPERDVITWTAMIAGYGMHGNGEKAV 434

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            LF  M ++G++P+  TFV LLS+C H GLVD+G
Sbjct: 435 HLFSLMHQSGVRPDYVTFVGLLSSCSHAGLVDQG 468



 Score =  112 bits (281), Expect = 4e-23
 Identities = 60/145 (41%), Positives = 81/145 (55%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN +I  F ++G   EA ++  +M+  G ++PD  TF  VL  C D+G LQ GK +H  +
Sbjct: 113 WNALIRGFIKHGLYREALILHSQMLGSG-IEPDNFTFPFVLKACADLGDLQMGKSIHHQI 171

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
            R  +   V V N L+ M ++CG+L  A  VF  M +KNV++W  MIAGYA  G A EA 
Sbjct: 172 ERSNYKGDVYVCNALVAMLAKCGDLIEAQRVFNQMTQKNVVSWTAMIAGYAQGGRAMEAL 231

Query: 363 LLFDEMSKNGIKPNSATFVALLSAC 437
            L  EM K G+ P   T    L AC
Sbjct: 232 DLLREMGKAGLSPKPVTLACALPAC 256



 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W  MI  + Q G ++EA  + + M + G L P   T A  L  C ++  +  GKE+HG  
Sbjct: 214 WTAMIAGYAQGGRAMEALDLLREMGKAG-LSPKPVTLACALPACANLEAIWFGKEIHGHA 272

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           ++ +    + V++ L  MY++  ++ YA  VF  M +K+V++WN MIAG   +GF+N+A 
Sbjct: 273 IKTKCDDDLYVASALSDMYAKTHDMTYATKVFDKMPKKSVVSWNGMIAGCNQNGFSNKAL 332

Query: 363 LLFDEMSKN-GIKPNSATFVALLSAC 437
            LF +M      KPN  T V LL +C
Sbjct: 333 DLFRKMVVTFPRKPNWVTLVNLLPSC 358



 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
 Frame = +3

Query: 96  PDY-------ATFANVLSVCVDMGGLQQGKEVHGSVLRHRFHCLVSVSNCLIHMYSQCGN 254
           PDY       AT+A++L  C     L  G+ +H  +  +       +   LI+MY+ CGN
Sbjct: 35  PDYGKPTHAPATYASLLQACTKTKSLCTGRVLHALLFFNGHQQNTPLQTNLINMYATCGN 94

Query: 255 LDYALGVFQSMQEKNVITWNTMIAGYATHGFANEACLLFDEMSKNGIKPNSATFVALLSA 434
           L  A  VF  +Q KNV +WN +I G+  HG   EA +L  +M  +GI+P++ TF  +L A
Sbjct: 95  LLDAQLVFDRLQSKNVRSWNALIRGFIKHGLYREALILHSQMLGSGIEPDNFTFPFVLKA 154

Query: 435 CRHGGLVDKGR 467
           C   G +  G+
Sbjct: 155 CADLGDLQMGK 165


>ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
           gi|449487596|ref|XP_004157705.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 675

 Score =  145 bits (365), Expect = 7e-33
 Identities = 69/155 (44%), Positives = 101/155 (65%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN  I   G+N    E   +F RMI LG    D ATF ++L++C D+  LQ G++ H  +
Sbjct: 359 WNATIFGLGENDKGEEGLKLFTRMIRLGPCL-DKATFTSILTICSDLETLQLGRQTHALI 417

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           L+  F+  V+VSN +I+MY++CGN+D A   F SM +++VI+WN+MI G+A HG   +A 
Sbjct: 418 LKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWNSMICGFAHHGNGEDAL 477

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            +F++M    I+PN  TF+ +LSAC H GL+DKGR
Sbjct: 478 EMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGR 512


>ref|XP_003550640.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37320-like [Glycine max]
          Length = 511

 Score =  144 bits (362), Expect = 2e-32
 Identities = 67/155 (43%), Positives = 100/155 (64%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W  +I  F Q         +FQ+M     L+P+Y T+ ++LS C+  G L  G+  H  +
Sbjct: 186 WTAIIAGFAQEWHVDMCLELFQQM-RGSDLRPNYFTYTSLLSACMGSGALGHGRCAHCQI 244

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           +R  FH  + + N LI MYS+CG +D AL +F++M  ++V+TWNTMI+GYA HG A EA 
Sbjct: 245 IRMGFHSYLHIENALISMYSKCGAIDDALHIFENMVSRDVVTWNTMISGYAQHGLAQEAI 304

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF+EM K G+ P++ T++ +LS+CRHGGLV +G+
Sbjct: 305 NLFEEMIKQGVNPDAVTYLGVLSSCRHGGLVKEGQ 339



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 40/123 (32%), Positives = 61/123 (49%)
 Frame = +3

Query: 99  DYATFANVLSVCVDMGGLQQGKEVHGSVLRHRFHCLVSVSNCLIHMYSQCGNLDYALGVF 278
           D    +  +S C     L  G + H   +   F   V V + LI +YS+C  L  A  VF
Sbjct: 116 DVFFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGDACRVF 175

Query: 279 QSMQEKNVITWNTMIAGYATHGFANEACLLFDEMSKNGIKPNSATFVALLSACRHGGLVD 458
           + M  +NV++W  +IAG+A     +    LF +M  + ++PN  T+ +LLSAC   G + 
Sbjct: 176 EEMPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACMGSGALG 235

Query: 459 KGR 467
            GR
Sbjct: 236 HGR 238



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WNTMI  + Q+G + EA  +F+ MI+ G + PD  T+  VLS C   G +++G+    S+
Sbjct: 287 WNTMISGYAQHGLAQEAINLFEEMIKQG-VNPDAVTYLGVLSSCRHGGLVKEGQVYFNSM 345

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQ-EKNVITWNTMIAGYATHG 344
           + H     +   +C++ +  + G L  A    Q+M    N + W ++++    HG
Sbjct: 346 VEHGVQPGLDHYSCIVDLLGRAGLLLEARDFIQNMPIFPNAVVWGSLLSSSRLHG 400


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  143 bits (361), Expect = 2e-32
 Identities = 65/155 (41%), Positives = 100/155 (64%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W+ MIG + + G S EA  +F+ M ++  + PD  T  ++LS C D+G L+ GK +   +
Sbjct: 202 WSAMIGGYARVGRSTEAVALFREM-QMAEVCPDEITMVSMLSACTDLGALELGKWIEAYI 260

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
            RH  H  V VSN LI M+++CG++  AL +F++M EK +++W ++I G A HG   EA 
Sbjct: 261 ERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEAT 320

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF+EM+ +G+ P+   F+ LLSAC H GLV++GR
Sbjct: 321 CLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGR 355



 Score =  107 bits (267), Expect = 2e-21
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           +NT+I A+ Q G S + ++    ++   A+ P+  T+  VL  C  +  L  G+ VHGSV
Sbjct: 99  FNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSV 158

Query: 183 LRHRFHCLVSVSNCLIHMYSQC-GNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEA 359
           ++  F C + V N ++HMYS C G ++ A  VF  M + + +TW+ MI GYA  G + EA
Sbjct: 159 VKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEA 218

Query: 360 CLLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
             LF EM    + P+  T V++LSAC   G ++ G+
Sbjct: 219 VALFREMQMAEVCPDEITMVSMLSACTDLGALELGK 254


>ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
           communis] gi|223527930|gb|EEF30017.1| basic
           helix-loop-helix-containing protein, putative [Ricinus
           communis]
          Length = 310

 Score =  143 bits (361), Expect = 2e-32
 Identities = 69/154 (44%), Positives = 101/154 (65%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W TM+  + QN    EA V+F +MI+ G + PD  T A V+S C  +G L  GKE+H  V
Sbjct: 141 WTTMVNCYAQNKKFGEALVVFNQMIKTG-ICPDEVTMATVISACAHLGALDLGKEIHLYV 199

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           +++ F   V + + LI MY++CG+LD +L VF  +QEKN+  WN++I G A HG+A EA 
Sbjct: 200 MQNGFDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEAL 259

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
            +F +M +  IKPN  TF+++L+AC H GLV++G
Sbjct: 260 EMFRKMGREKIKPNGVTFISVLNACAHAGLVEEG 293



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 52/83 (62%)
 Frame = +3

Query: 219 NCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEACLLFDEMSKNGIK 398
           N LI+ YS+  +L+ A  +F  M E+++I+W TM+  YA +    EA ++F++M K GI 
Sbjct: 111 NTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGIC 170

Query: 399 PNSATFVALLSACRHGGLVDKGR 467
           P+  T   ++SAC H G +D G+
Sbjct: 171 PDEVTMATVISACAHLGALDLGK 193



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 31/95 (32%), Positives = 46/95 (48%)
 Frame = +3

Query: 96  PDYATFANVLSVCVDMGGLQQGKEVHGSVLRHRFHCLVSVSNCLIHMYSQCGNLDYALGV 275
           P   TF++++  C     ++ G+ VHG V RH     V V   L+  YS  G +  +  V
Sbjct: 8   PSSYTFSSLIKACGLASEVKFGEVVHGHVWRHGLESHVFVQTALVDFYSTVGRIIESKKV 67

Query: 276 FQSMQEKNVITWNTMIAGYATHGFANEACLLFDEM 380
           F  M E+++  W TM+   A  G  + A  LFD M
Sbjct: 68  FDEMPERDIFAWATMVTSLARIGDMSSARRLFDMM 102


>ref|XP_006344817.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Solanum tuberosum]
          Length = 686

 Score =  142 bits (359), Expect = 3e-32
 Identities = 71/154 (46%), Positives = 100/154 (64%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN++IG   QNG + +A  I   M + G +KP+  T  +VL +C+D+G +++GKE+HG +
Sbjct: 282 WNSVIGGCMQNGRTDKALQILHEMQQSG-VKPNKITITSVLPLCIDLGSIRRGKEIHGFL 340

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           LRH F    +V   L+ MY++CG+L+ +  VF  M +K+ I WNTMI G + HG   EA 
Sbjct: 341 LRHLFLEDETVFTALVFMYAKCGDLELSNRVFYMMPKKDTIAWNTMIIGNSMHGKGEEAL 400

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
           LLF EM  +G+KPNS TF  +LS C H  LVDKG
Sbjct: 401 LLFHEMVSSGVKPNSVTFTGVLSGCSHSQLVDKG 434



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W  +I A+ ++GF  EA  ++  + E   L PD     +V   C  +G L + K +H  V
Sbjct: 45  WTLLITAYTKSGFPKEALEVYDELREKKVL-PDQLALLSVTKACAALGNLIKAKGIHEDV 103

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALG---VFQSMQEKNVITWNTMIAGYATHGFAN 353
           +R+ +   + + N LI MY +C    YALG   VF ++  K+VI+W +M + Y      +
Sbjct: 104 IRYGYRADLLLGNALIDMYGKC---KYALGAREVFDNLSAKDVISWTSMSSCYVNCKLPS 160

Query: 354 EACLLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
           EA ++F EM  NG++PN  T   +L AC     ++ GR
Sbjct: 161 EALIMFREMGLNGVRPNPVTLSTVLPACSDLKSLNLGR 198



 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 43/153 (28%), Positives = 82/153 (53%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W +M   +       EA ++F+ M  L  ++P+  T + VL  C D+  L  G+E+HG +
Sbjct: 146 WTSMSSCYVNCKLPSEALIMFREM-GLNGVRPNPVTLSTVLPACSDLKSLNLGREIHGYI 204

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           +R+  H  V VS+ L+ MY+ C ++  A  VF S ++ + +  N +++ Y ++   ++A 
Sbjct: 205 VRNGIHDNVYVSSALVDMYASCSSIKQAEMVFNSTRQFDYVLCNVIMSAYFSNTECDKAL 264

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDK 461
            +FD++ K   K N  ++ +++  C   G  DK
Sbjct: 265 RIFDQLRKGRTKLNHDSWNSVIGGCMQNGRTDK 297


>emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  142 bits (359), Expect = 3e-32
 Identities = 70/154 (45%), Positives = 97/154 (62%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W  +I  + Q+G+  EA  +F  M   G  + + +TF + LS C ++  L+ GK+VHG V
Sbjct: 281 WAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRV 339

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           ++        V N L+ MY +CGN+D A  VF+ ++EK V++WNTMIAGYA HGF  EA 
Sbjct: 340 VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEAL 399

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
           +LF+ M K GI P+  T V +LSAC H GLVDKG
Sbjct: 400 MLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 433



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WNTMI  + QNG  LEA    QR+ E   ++ D  T+  ++S  V  G L + + V   +
Sbjct: 157 WNTMISGYAQNGELLEA----QRLFEESPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGM 211

Query: 183 LRHRFHCLVSVS-NCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTM------------- 320
                    SVS N +I  Y QC  +D A  +F++M  +NV +WNTM             
Sbjct: 212 PEKN-----SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQA 266

Query: 321 ------------------IAGYATHGFANEACLLFDEMSKNGIKPNSATFVALLSACRHG 446
                             IAGYA  G+  EA  LF EM ++G + N +TF + LS C   
Sbjct: 267 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 326

Query: 447 GLVDKGR 467
             ++ G+
Sbjct: 327 AALELGK 333



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 46/155 (29%), Positives = 78/155 (50%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN M+  + QNG+  EA  IF  M    ++     ++  +L+  V  G ++  + +  S 
Sbjct: 64  WNAMLSGYAQNGYVKEAKEIFDEMPCKNSI-----SWNGMLAAYVQNGRIEDARRLFESK 118

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
                  L+S  NC++  Y +   L  A G+F  M E++ ++WNTMI+GYA +G   EA 
Sbjct: 119 ADWE---LISW-NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQ 174

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF+E     +     T+ A++S     G++D+ R
Sbjct: 175 RLFEESPVRDV----FTWTAMVSGYVQNGMLDEAR 205


>ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  142 bits (359), Expect = 3e-32
 Identities = 70/154 (45%), Positives = 97/154 (62%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           W  +I  + Q+G+  EA  +F  M   G  + + +TF + LS C ++  L+ GK+VHG V
Sbjct: 362 WAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALELGKQVHGRV 420

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
           ++        V N L+ MY +CGN+D A  VF+ ++EK V++WNTMIAGYA HGF  EA 
Sbjct: 421 VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEAL 480

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKG 464
           +LF+ M K GI P+  T V +LSAC H GLVDKG
Sbjct: 481 MLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 514



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WNTMI  + QNG  LEA    QR+ E   ++ D  T+  ++S  V  G L + + V   +
Sbjct: 238 WNTMISGYAQNGELLEA----QRLFEESPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGM 292

Query: 183 LRHRFHCLVSVS-NCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTM------------- 320
                    SVS N +I  Y QC  +D A  +F++M  +NV +WNTM             
Sbjct: 293 PEKN-----SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQA 347

Query: 321 ------------------IAGYATHGFANEACLLFDEMSKNGIKPNSATFVALLSACRHG 446
                             IAGYA  G+  EA  LF EM ++G + N +TF + LS C   
Sbjct: 348 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 407

Query: 447 GLVDKGR 467
             ++ G+
Sbjct: 408 AALELGK 414



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 46/155 (29%), Positives = 78/155 (50%)
 Frame = +3

Query: 3   WNTMIGAFGQNGFSLEASVIFQRMIELGALKPDYATFANVLSVCVDMGGLQQGKEVHGSV 182
           WN M+  + QNG+  EA  IF  M    ++     ++  +L+  V  G ++  + +  S 
Sbjct: 145 WNAMLSGYAQNGYVKEAKEIFDEMPCKNSI-----SWNGMLAAYVQNGRIEDARRLFESK 199

Query: 183 LRHRFHCLVSVSNCLIHMYSQCGNLDYALGVFQSMQEKNVITWNTMIAGYATHGFANEAC 362
                  L+S  NC++  Y +   L  A G+F  M E++ ++WNTMI+GYA +G   EA 
Sbjct: 200 ADWE---LISW-NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQ 255

Query: 363 LLFDEMSKNGIKPNSATFVALLSACRHGGLVDKGR 467
            LF+E     +     T+ A++S     G++D+ R
Sbjct: 256 RLFEESPVRDV----FTWTAMVSGYVQNGMLDEAR 286