BLASTX nr result

ID: Ephedra28_contig00029517 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029517
         (428 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004252210.1| PREDICTED: putative pentatricopeptide repeat...    56   4e-06

>ref|XP_004252210.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Solanum lycopersicum]
          Length = 796

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
 Frame = +3

Query: 3   LFERGFVPDTVTYNTMLNHFCKTGMRNQAEMWLARLVKTHFIPNAVT-CKMMSHICSDKP 179
           +  RGF PD  TYNT++  +CK+GM  QA++ L   V   F+P+  T C ++  +C D  
Sbjct: 312 MVNRGFDPDAFTYNTIIGAYCKSGMIQQADIILKNAVFKGFVPDVFTFCSLIYGLCQDGD 371

Query: 180 --RASHYGKKAIRRGLMLNILM 239
             RA     +AI +G+  N+++
Sbjct: 372 FNRAKSLFNEAIGKGMESNVIL 393


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