BLASTX nr result
ID: Ephedra28_contig00029350
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00029350
(565 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 206 2e-51
gb|AAV59370.1| hypothetical protein [Oryza sativa Japonica Group] 197 1e-48
gb|ABW74566.1| integrase [Boechera divaricarpa] 194 1e-47
emb|CAN65499.1| hypothetical protein VITISV_010671 [Vitis vinifera] 193 3e-47
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 192 4e-47
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 192 4e-47
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 191 8e-47
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus] 189 4e-46
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 189 5e-46
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 188 7e-46
gb|AGH20671.1| reverse transcriptase, partial [Thlaspi arvense] 188 7e-46
gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis c... 187 1e-45
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle... 187 1e-45
gb|AGH20672.1| reverse transcriptase, partial [Thlaspi arvense] 187 2e-45
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 187 2e-45
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle... 187 2e-45
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle... 187 2e-45
gb|AGH20669.1| reverse transcriptase, partial [Lepidium sativum] 186 3e-45
emb|CAN63433.1| hypothetical protein VITISV_033829 [Vitis vinifera] 186 3e-45
gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halle... 186 5e-45
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 206 bits (525), Expect = 2e-51
Identities = 97/188 (51%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V PEGK IG+KWV++TK N G + KARLVAK Y QQQGVDFDE+F+P++R ET+R
Sbjct: 851 VDAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETVR 910
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
V+++AA+ LP+YQ DV SAFLNG L+EEVY+ QP+GF++ G E VY+L KALY LKQ
Sbjct: 911 VVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQ 970
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVD-FMIIAVYVDDILALCSCNSMYDHF 25
APR W++++D + GFR + PT+Y+K+ G D F+++ +YVDD++ + S S+ + F
Sbjct: 971 APRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDF 1030
Query: 24 LIEIMQEF 1
+M+ F
Sbjct: 1031 KSNMMRNF 1038
>gb|AAV59370.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1332
Score = 197 bits (502), Expect = 1e-48
Identities = 97/187 (51%), Positives = 132/187 (70%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
VPLP RPIG+KWVYK KR+ VG ++KARLVAK Y+QQ G+DF+E FAP++R ET+R
Sbjct: 852 VPLPAEHRPIGLKWVYKIKRDLVGSIVKYKARLVAKGYVQQHGIDFEEVFAPVARIETVR 911
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++AA+ ++ +DV SAFLNG L+EEVY+ QP GF V G+E VYRLHKALY L+Q
Sbjct: 912 SLLALAAQEGWQVHHMDVKSAFLNGDLEEEVYVSQPLGFEVTGEEAKVYRLHKALYGLRQ 971
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFL 22
APR W+A+LD L +GF S P VY + +I+ VYVDD++ + S S+ F
Sbjct: 972 APRAWYAKLDATLIKMGFEGSTSDPAVYKRNSEHSTLIVGVYVDDLVIIGSQVSVIQGFK 1031
Query: 21 IEIMQEF 1
+E+ +EF
Sbjct: 1032 VEMQKEF 1038
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 194 bits (493), Expect = 1e-47
Identities = 92/188 (48%), Positives = 130/188 (69%), Gaps = 1/188 (0%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V LPE K IGVKWV+KTK ++KARLV K Y Q+ GVD++++F+P++R +T+R
Sbjct: 682 VELPEEKHSIGVKWVFKTKYQADDNIQKYKARLVVKGYAQEYGVDYEKTFSPVARFDTLR 741
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++ A PIYQ DV SAFLNG L EEVY+ QPEGF+V G+EG VYRL+KALY LKQ
Sbjct: 742 TLLALGAYMHWPIYQFDVKSAFLNGELREEVYVDQPEGFIVEGREGFVYRLYKALYGLKQ 801
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGV-DFMIIAVYVDDILALCSCNSMYDHF 25
APR W+ ++D Y GF S PT+Y+K+ G D +++ +YVDD++ + S S+ F
Sbjct: 802 APRAWYNKIDSYFAETGFERSKSEPTLYIKKQGAGDILVVCLYVDDMIYMGSSASLVSEF 861
Query: 24 LIEIMQEF 1
+M++F
Sbjct: 862 KASMMEKF 869
>emb|CAN65499.1| hypothetical protein VITISV_010671 [Vitis vinifera]
Length = 750
Score = 193 bits (490), Expect = 3e-47
Identities = 95/187 (50%), Positives = 130/187 (69%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V P K+ IGVKWVY+TK N G ++ K+RLV K Y Q GVDF E+FAP+ R +TIR
Sbjct: 545 VDKPTHKKAIGVKWVYRTKLNCDGSINKHKSRLVVKGYAQMFGVDFSETFAPVGRLDTIR 604
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++AA+ IYQ DV SAFLNG+L+EE+++ QPEGFVV GKE VY L KALY LKQ
Sbjct: 605 ILLALAAQMGWKIYQPDVKSAFLNGYLEEEIFVEQPEGFVVKGKEDKVYHLKKALYGLKQ 664
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFL 22
APR W++R++ YL S+GF+ S T+Y+++ D +II++YVDD+L S + D F
Sbjct: 665 APRAWYSRINAYLLSLGFKKSQSESTLYIRKINADILIISLYVDDLLVTGSNQCLMDKFK 724
Query: 21 IEIMQEF 1
+E + F
Sbjct: 725 VETEEVF 731
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 192 bits (489), Expect = 4e-47
Identities = 92/187 (49%), Positives = 129/187 (68%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V P + IGVKWVYKTK N G ++KARLVAK + Q+ G+D+ E++AP++R ETIR
Sbjct: 741 VDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIR 800
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++AA+ IYQLDV SAFLNG+LDEE+Y+ QPEGF V G E V+RL KALY LKQ
Sbjct: 801 TIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQ 860
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFL 22
APR W++++D Y GF +S PT+YV + G D +I+++YVDD++ + M F
Sbjct: 861 APRAWYSQIDKYFIQKGFAKSISEPTLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFK 920
Query: 21 IEIMQEF 1
++M +
Sbjct: 921 KDMMHTY 927
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 192 bits (489), Expect = 4e-47
Identities = 92/187 (49%), Positives = 129/187 (68%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V P + IGVKWVYKTK N G ++KARLVAK + Q+ G+D+ E++AP++R ETIR
Sbjct: 878 VDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIR 937
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++AA+ IYQLDV SAFLNG+LDEE+Y+ QPEGF V G E V+RL KALY LKQ
Sbjct: 938 TIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQ 997
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFL 22
APR W++++D Y GF +S PT+YV + G D +I+++YVDD++ + M F
Sbjct: 998 APRAWYSQIDKYFIQKGFAKSISEPTLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFK 1057
Query: 21 IEIMQEF 1
++M +
Sbjct: 1058 KDMMHTY 1064
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 191 bits (486), Expect = 8e-47
Identities = 92/187 (49%), Positives = 129/187 (68%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V P + IGVKWVYKTK N G ++KARLVAK + Q+ G+D+ E++AP++R ETIR
Sbjct: 668 VDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIR 727
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++AA+ IYQLDV SAFLNG+LDEE+Y+ QPEGF V G E V+RL KALY LKQ
Sbjct: 728 TIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQ 787
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFL 22
APR W++++D Y GF +S PT+YV + G D +I+++YVDD++ + M F
Sbjct: 788 APRVWYSQIDKYFIQKGFAKSISEPTLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQDFK 847
Query: 21 IEIMQEF 1
++M +
Sbjct: 848 KDMMHTY 854
>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 189 bits (480), Expect = 4e-46
Identities = 93/185 (50%), Positives = 126/185 (68%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y + GF +Y+K D +I +YVDD++ + M++ F E
Sbjct: 153 RAWNTRIDKYFNEKGFIKCPYEHALYIKTQNNDILIACLYVDDLIFTGNNPIMFEDFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 189 bits (479), Expect = 5e-46
Identities = 93/185 (50%), Positives = 126/185 (68%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y+Q+ G+D+DE FAP++R ET+R +
Sbjct: 872 LPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLI 931
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 991
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +YVDD++ + SM++ F E
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKE 1051
Query: 15 IMQEF 1
+ +EF
Sbjct: 1052 MTKEF 1056
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 188 bits (478), Expect = 7e-46
Identities = 93/185 (50%), Positives = 127/185 (68%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LPEG +PIGVKW++K K N GE R+KARLVAK Y Q++G+D+DE FAP+ R ETIR +
Sbjct: 871 LPEGSQPIGVKWIFKKKMNAQGEIERYKARLVAKGYKQKEGIDYDEVFAPVVRMETIRLL 930
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S AA++ PI+Q+DV SAFLNG L+EEVYI QP G++ G+E V +L KALY LKQAP
Sbjct: 931 ISQAAQFKWPIFQMDVKSAFLNGVLEEEVYIEQPPGYMKIGEEKKVLKLKKALYGLKQAP 990
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y GF+ +Y K G + + +A+YVDD++ + + N M + F
Sbjct: 991 RAWNTRIDTYFKENGFKQCPYEHALYAKNNGGNMIFVALYVDDLIFMGNNNDMIEEFKGT 1050
Query: 15 IMQEF 1
+ +EF
Sbjct: 1051 MRREF 1055
>gb|AGH20671.1| reverse transcriptase, partial [Thlaspi arvense]
Length = 315
Score = 188 bits (478), Expect = 7e-46
Identities = 94/185 (50%), Positives = 124/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y Q G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQSAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V GKE V RL KALY LKQAP
Sbjct: 93 ISLAAQNRWRIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGKEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K + +I +YVDD++ S SM++ F E
Sbjct: 153 RAWNTRIDKYFKEKSFIKCPYEHALYIKTQNNNILIACLYVDDLIFTGSNPSMFEEFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 315
Score = 187 bits (476), Expect = 1e-45
Identities = 93/185 (50%), Positives = 124/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERHKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG LDEEVYI QP+G+VV G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNVWKIHQMDVKSAFLNGELDEEVYIEQPQGYVVKGEEDKVLRLRKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +Y+DD++ + +M++ F E
Sbjct: 153 RAWSTRIDKYFKEKNFIKCPYEHALYIKTQNNDILIACLYIDDLIFTNNNPNMFEDFKQE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 187 bits (476), Expect = 1e-45
Identities = 93/185 (50%), Positives = 125/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +YVDD++ + SM++ F E
Sbjct: 153 RSWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLYVDDLIFTGNNPSMFEEFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AGH20672.1| reverse transcriptase, partial [Thlaspi arvense]
Length = 315
Score = 187 bits (475), Expect = 2e-45
Identities = 94/185 (50%), Positives = 125/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAKDY Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKDYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP G++V G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNRWRIHQMDVKSAFLNGDLEEEVYIEQPRGYIVKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R R+D Y F +Y+K + D +I +YVDD++ S SM++ F E
Sbjct: 153 RACNTRIDKYFKEKSFIECPYEHALYIKTHNNDILIACLYVDDLIFTGSNPSMFEEFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 187 bits (475), Expect = 2e-45
Identities = 93/185 (50%), Positives = 125/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 840 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 899
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 900 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 959
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +YVDD++ + SM++ F E
Sbjct: 960 RAWNTRIDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKE 1019
Query: 15 IMQEF 1
+ +EF
Sbjct: 1020 MTKEF 1024
>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 187 bits (474), Expect = 2e-45
Identities = 93/185 (50%), Positives = 125/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +YVDD++ + SM++ F E
Sbjct: 153 RAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLYVDDLIFTGNNPSMFEEFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera] gi|389595484|gb|AFK88545.1| reverse
transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 187 bits (474), Expect = 2e-45
Identities = 93/185 (50%), Positives = 125/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +YVDD++ + SM++ F E
Sbjct: 153 RAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLYVDDLIFTGNNPSMFEEFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217
>gb|AGH20669.1| reverse transcriptase, partial [Lepidium sativum]
Length = 315
Score = 186 bits (473), Expect = 3e-45
Identities = 91/185 (49%), Positives = 127/185 (68%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKW+YK K+N GE R+KARLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWMYKAKKNANGEIERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+GF++ G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNKWRIHQMDVKSAFLNGDLNEEVYIEQPQGFIIKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R++ Y F +Y+K D +I +YVDD++ + SM++ F +E
Sbjct: 153 RAWNTRIEKYFKEKDFIKCPYEHALYIKTQNNDILIACLYVDDLIFTGNNPSMFEKFKME 212
Query: 15 IMQEF 1
+++EF
Sbjct: 213 MIKEF 217
>emb|CAN63433.1| hypothetical protein VITISV_033829 [Vitis vinifera]
Length = 1072
Score = 186 bits (473), Expect = 3e-45
Identities = 91/187 (48%), Positives = 130/187 (69%)
Frame = -2
Query: 561 VPLPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIR 382
V P K+PIGVKWVY+TK N G ++ KARLV K Y Q GVDF E+FAP++R +TIR
Sbjct: 680 VDRPSHKKPIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFSETFAPVARLDTIR 739
Query: 381 CVVSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQ 202
++++AA+ IY+LDV SAFLNG+L+EE+++ QPEGF + GKE VY L KALY L+Q
Sbjct: 740 MLLALAAQRKWKIYKLDVKSAFLNGYLEEEIFVEQPEGFAIKGKEEKVYLLKKALYGLRQ 799
Query: 201 APRDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFL 22
APR W++R+D +L ++GF +S T+Y+++ D +I+++YVDD+L S + F
Sbjct: 800 APRAWYSRIDTHLLTLGFHKSLSEFTLYIEKIEEDILIVSLYVDDLLVTGSNAGFVNKFK 859
Query: 21 IEIMQEF 1
E+ F
Sbjct: 860 AEMEHVF 866
>gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 186 bits (471), Expect = 5e-45
Identities = 92/185 (49%), Positives = 124/185 (67%)
Frame = -2
Query: 555 LPEGKRPIGVKWVYKTKRNEVGEPSRFKARLVAKDYLQQQGVDFDESFAPISRAETIRCV 376
LP G + IGVKWVYK K+N GE R+K RLVAK Y Q+ G+D+DE FAP++R ET+R +
Sbjct: 33 LPNGHKAIGVKWVYKAKKNSKGEVERYKGRLVAKGYCQRAGIDYDEVFAPVARLETVRLI 92
Query: 375 VSIAARYDLPIYQLDVISAFLNGHLDEEVYIHQPEGFVVPGKEGLVYRLHKALYELKQAP 196
+S+AA+ I+Q+DV SAFLNG L+EEVYI QP+G++V G+E V RL KALY LKQAP
Sbjct: 93 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 152
Query: 195 RDWFARLDGYLHSIGFRSLVSAPTVYVKEYGVDFMIIAVYVDDILALCSCNSMYDHFLIE 16
R W R+D Y F +Y+K D +I +YVDD++ + SM++ F E
Sbjct: 153 RAWNTRIDKYFKEKDFIKCPYEHALYIKIQKDDILIACLYVDDLIFTGNNPSMFEEFKKE 212
Query: 15 IMQEF 1
+ +EF
Sbjct: 213 MTKEF 217