BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029262
         (735 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]         89   1e-15
ref|XP_004510105.1| PREDICTED: pentatricopeptide repeat-containi...    87   4e-15
gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]         87   4e-15
ref|XP_002521681.1| pentatricopeptide repeat-containing protein,...    87   4e-15
ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [S...    86   1e-14
ref|XP_006857185.1| hypothetical protein AMTR_s00065p00182300 [A...    84   5e-14
ref|XP_006389305.1| hypothetical protein POPTR_0030s00250g [Popu...    84   6e-14
ref|XP_002319048.1| predicted protein [Populus trichocarpa]            84   6e-14
ref|XP_002267809.2| PREDICTED: pentatricopeptide repeat-containi...    83   8e-14
ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Sela...    83   8e-14
ref|XP_006405989.1| hypothetical protein EUTSA_v10028308mg [Eutr...    83   1e-13
ref|XP_006300886.1| hypothetical protein CARUB_v10019976mg [Caps...    83   1e-13
gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protei...    83   1e-13
ref|NP_176481.2| pentatricopeptide repeat protein RPF3 [Arabidop...    83   1e-13
emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]         83   1e-13
ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Sela...    83   1e-13
ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Sela...    82   1e-13
gb|AAM62704.1| unknown [Arabidopsis thaliana]                          82   1e-13
ref|XP_004304863.1| PREDICTED: pentatricopeptide repeat-containi...    82   2e-13
ref|XP_004289096.1| PREDICTED: pentatricopeptide repeat-containi...    82   2e-13

>gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 45/137 (32%), Positives = 81/137 (59%)
 Frame = +1

Query: 325 LKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPN 504
           L   +L+ A+  ++++++    PN  T+++L+R       +++AL +   M+  G   PN
Sbjct: 126 LSDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGC-GPN 184

Query: 505 IITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFT 684
           ++T+N L+A   + GE+D  ER++ +M D  L P+ VT++ MV   C AG+ E A ++F 
Sbjct: 185 VVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFD 244

Query: 685 EMTSQEIGPDLVSFNIL 735
           EM  + + PD VS+N L
Sbjct: 245 EMMREGLAPDGVSYNTL 261



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 38/115 (33%), Positives = 63/115 (54%)
 Frame = +1

Query: 391 PNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNVLLADCSKTGELDMVER 570
           PN  T++ L+  F +    + A +L   M + G  KPN++TFN ++    K G+++   +
Sbjct: 183 PNVVTYNTLVAAFFRAGEVDGAERLVGMMLD-GGLKPNLVTFNSMVNGMCKAGKMEDARK 241

Query: 571 ILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQEIGPDLVSFNIL 735
           + + M    L PD V+Y+ +V  +C AG    A  +F EMT + I PD+V+F  L
Sbjct: 242 VFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 296


>ref|XP_004510105.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17670-like isoform X1 [Cicer arietinum]
           gi|502155526|ref|XP_004510106.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g17670-like isoform X2 [Cicer arietinum]
          Length = 468

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
 Frame = +1

Query: 322 LLKSKTLSEAKDLYETIITTRRRPN-FNTHHVLLRKFAKNTMKEDALKLFLFM-KERGAF 495
           L KS  L EAK ++ +I+ +   PN F  H+ LL+ +A  +   D++     M K   +F
Sbjct: 60  LFKSPCLQEAKSIFNSIVKSSNVPNDFRFHNSLLQSYASVSTINDSIAFLRHMTKTHPSF 119

Query: 496 KPNIITFNVLLADCSKTGE--LDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
            P+  T+++LL    K+ +  L  + + L LM    + PD+VT DL VR+ CSAG  + A
Sbjct: 120 TPDKSTYHILLTQSCKSTDTTLSQIHQTLNLMVSDGVSPDKVTVDLAVRSLCSAGRMDEA 179

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            E+  E++S+   PD+ +FN L
Sbjct: 180 VELIKELSSKHCSPDIYTFNFL 201



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 35/142 (24%), Positives = 70/142 (49%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   +  +K L E   L   +     + +   ++ +++ + K     +A++++  MKE G
Sbjct: 237 LIDNVCNAKNLRETLSLMSVLDEEGFKLDCYAYNTIMKGYCKMGRGNEAIEVYNKMKEAG 296

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
             +P++IT+N L+   SK+G +   +++L +M +    PD VTY  ++   C  GE   A
Sbjct: 297 V-EPDLITYNTLIYGLSKSGRVMEAKKLLRVMAEKGHFPDEVTYTSLMNGLCRKGEILSA 355

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
             +  EM +    P+  ++N L
Sbjct: 356 IALLEEMEAIGCSPNSCTYNTL 377



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 27/140 (19%), Positives = 64/140 (45%)
 Frame = +1

Query: 316 QQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAF 495
           + L  +  + EA +L + + +    P+  T + L++   K           + M+ +   
Sbjct: 168 RSLCSAGRMDEAVELIKELSSKHCSPDIYTFNFLVKHLCKCLTLSTLYSFIIEMRSKFGV 227

Query: 496 KPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACE 675
           KP+++TF +L+ +      L     ++ ++ +     D   Y+ +++ +C  G    A E
Sbjct: 228 KPDLVTFTILIDNVCNAKNLRETLSLMSVLDEEGFKLDCYAYNTIMKGYCKMGRGNEAIE 287

Query: 676 IFTEMTSQEIGPDLVSFNIL 735
           ++ +M    + PDL+++N L
Sbjct: 288 VYNKMKEAGVEPDLITYNTL 307


>gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 44/137 (32%), Positives = 81/137 (59%)
 Frame = +1

Query: 325 LKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPN 504
           L   +L+ A+  ++++++    PN  T+++L+R       +++AL +   M+  G   PN
Sbjct: 166 LSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGC-GPN 224

Query: 505 IITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFT 684
           ++T+N L+A   + GE+D  ER++ +M +  L P+ VT++ MV   C AG+ E A ++F 
Sbjct: 225 VVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFD 284

Query: 685 EMTSQEIGPDLVSFNIL 735
           EM  + + PD VS+N L
Sbjct: 285 EMVREGLAPDGVSYNTL 301



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 39/115 (33%), Positives = 64/115 (55%)
 Frame = +1

Query: 391 PNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNVLLADCSKTGELDMVER 570
           PN  T++ L+  F +    + A +L   M+E G  KPN++TFN ++    K G+++   +
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMRE-GGLKPNLVTFNSMVNGMCKAGKMEDARK 281

Query: 571 ILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQEIGPDLVSFNIL 735
           + + M    L PD V+Y+ +V  +C AG    A  +F EMT + I PD+V+F  L
Sbjct: 282 VFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 336


>ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539072|gb|EEF40668.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 458

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 49/144 (34%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
 Frame = +1

Query: 316 QQLLKSKTLSEAKDLYETIITTRRRP-NFNTHHVLLRKFAKNTMKEDALKLFLFM-KERG 489
           ++L KS  L+EAK+++ ++I+T R P +   HH  L+ ++  +  +D++ L   M K   
Sbjct: 52  KRLFKSPELNEAKEIFNSLISTTRVPLDLRFHHSFLQSYSSISTIDDSISLLRHMIKTLP 111

Query: 490 AFKPNIITFNVLLADCSKTGE--LDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHE 663
           +F P I T+++LL+   K  +  L  V +IL LM ++  MP +VT D+ VRA CSAG+ +
Sbjct: 112 SFTPTISTYHILLSQSCKAPDPTLSPVHQILNLMVNNGFMPTQVTVDIAVRALCSAGKED 171

Query: 664 RACEIFTEMTSQEIGPDLVSFNIL 735
            A ++  E++ +   PD  ++N L
Sbjct: 172 DAVKLVKELSLKHSKPDSFTYNFL 195



 Score = 67.4 bits (163), Expect = 5e-09
 Identities = 38/142 (26%), Positives = 71/142 (50%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   +  SK L EA  L   +     +P+   ++ +++ +   +   DA+++F  MKE G
Sbjct: 231 LIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEG 290

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
             +P++IT+N L+   SK G +   +R L++M +    PD VTY  ++   C  G+   A
Sbjct: 291 -IEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMNGLCRKGDALGA 349

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
             +  +M  +   P+  ++N L
Sbjct: 350 LALLEDMEMKGCSPNSCTYNTL 371


>ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
           gi|241914719|gb|EER87863.1| hypothetical protein
           SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 43/137 (31%), Positives = 79/137 (57%)
 Frame = +1

Query: 325 LKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPN 504
           L   +L  A+  ++++++    PN  T+++L+R       +++AL +   M+  G   PN
Sbjct: 133 LSDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGC-DPN 191

Query: 505 IITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFT 684
            +T+N L+A   + GE+D  ER++++M +  L P+ VT++ +V   C AG  E A ++F 
Sbjct: 192 AVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFD 251

Query: 685 EMTSQEIGPDLVSFNIL 735
           EM  + + PD VS+N L
Sbjct: 252 EMVKEGLAPDGVSYNTL 268



 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 38/115 (33%), Positives = 62/115 (53%)
 Frame = +1

Query: 391 PNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNVLLADCSKTGELDMVER 570
           PN  T++ L+  F +    + A +L   M+E G  KPN++TFN ++    K G ++   +
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMRE-GGLKPNLVTFNSVVNGICKAGRMEDARK 248

Query: 571 ILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQEIGPDLVSFNIL 735
           + + M    L PD V+Y+ +V  +C  G    A  +F EMT + I PD+V+F  L
Sbjct: 249 VFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSL 303



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 36/132 (27%), Positives = 62/132 (46%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
           + EA++L   +     +P+  T+  +L  + KN     A +L   M E G   P+ IT++
Sbjct: 383 MDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVL-PDAITYS 441

Query: 520 VLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQ 699
            L+    +   L     + + M    L PD VTY  ++   C  G  ERA  +  EM   
Sbjct: 442 SLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKA 501

Query: 700 EIGPDLVSFNIL 735
            + PD+V++++L
Sbjct: 502 GVLPDVVTYSVL 513


>ref|XP_006857185.1| hypothetical protein AMTR_s00065p00182300 [Amborella trichopoda]
           gi|548861268|gb|ERN18652.1| hypothetical protein
           AMTR_s00065p00182300 [Amborella trichopoda]
          Length = 470

 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 8/151 (5%)
 Frame = +1

Query: 307 ELTQQLLKSKTLSEAKDLYETIITTRRRPNFNT-HHVLLRKFAK-NTMKEDALKLFLFMK 480
           +L   L K+ ++SEAK  Y+  +  R        H+ LL+ F        ++L L   MK
Sbjct: 63  KLPLNLFKTPSISEAKATYDAALAARGHTRSTPFHNALLKDFCLLRPNLPNSLSLVHHMK 122

Query: 481 ERGAFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEH 660
           E+  F P+  TFN++L  C    ++  V + L LMT     PD V+ DL+VRA CS+   
Sbjct: 123 EKSGFAPDHATFNIILGLCCSNADMAAVHQTLALMTASGFPPDNVSCDLIVRALCSSALE 182

Query: 661 ERACEIFTEMTSQEI------GPDLVSFNIL 735
           + ACE+F ++ S  +       PD+ +FN L
Sbjct: 183 DEACELFKDIASSNLKSRSSSPPDMFTFNFL 213



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 34/142 (23%), Positives = 70/142 (49%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   + +SK L EA  L   +     +P+   ++ +++ +       +A+ ++  M+E G
Sbjct: 248 LIDAVCRSKNLREATRLLGVLGEAGYKPDCFLYNTIMKGYCLLDRGAEAITVYKKMREEG 307

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
             +P+++T+N L+   S  G+ D+  + L +M +   +PD VTY  ++   C  G    A
Sbjct: 308 C-EPDLVTYNTLIYGLSNAGKEDIAMKYLRVMVEEGHLPDTVTYTSLMNGMCRKGNATGA 366

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            E+  EM  +   P+  +++ L
Sbjct: 367 LELLKEMEDRGCEPNSCTYSTL 388


>ref|XP_006389305.1| hypothetical protein POPTR_0030s00250g [Populus trichocarpa]
           gi|550312065|gb|ERP48219.1| hypothetical protein
           POPTR_0030s00250g [Populus trichocarpa]
          Length = 611

 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 44/142 (30%), Positives = 80/142 (56%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   L K   + EA+ ++ET+I     PN NT++ L+  +   +  ++A KLF  M  +G
Sbjct: 307 LVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG 366

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P++ ++N+L+    K+G +D  + +L  M+   L PD VTY  +++ FC  G  + A
Sbjct: 367 C-APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDA 425

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++  EM S  + PDL++++I+
Sbjct: 426 QKLLEEMRSYGLLPDLMTYSIV 447



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 37/136 (27%), Positives = 74/136 (54%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           KS  + EAK L   +      P+  T+  L++ F ++   +DA KL   M+  G   P++
Sbjct: 383 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLL-PDL 441

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
           +T++++L    K G LD    +L+ M +  + P+   Y ++++  C+ G+ E A E+F+ 
Sbjct: 442 MTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSN 501

Query: 688 MTSQEIGPDLVSFNIL 735
           +  + I PD+V++ ++
Sbjct: 502 LFVKGIQPDVVTYTVM 517



 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 39/142 (27%), Positives = 69/142 (48%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           +   L K K ++EA +    ++     PN  T+  +L  F       +A  LF  M ER 
Sbjct: 237 IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN 296

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+ +TFN+L+   SK G +   + + E M +  + P+  TY+ ++  +CS  + + A
Sbjct: 297 VM-PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 355

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++F  M  +   P + S+NIL
Sbjct: 356 QKLFNIMVRKGCAPSVRSYNIL 377



 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 35/136 (25%), Positives = 67/136 (49%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           K+K +   K L++ ++     P+  T+  ++    K      A++L   M+E+G  KPN+
Sbjct: 174 KAKIIDAVK-LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGC-KPNV 231

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
           + ++ ++    K   +      L  M +  + P+ VTY  ++  FC+ G    A  +F +
Sbjct: 232 VVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQ 291

Query: 688 MTSQEIGPDLVSFNIL 735
           M  + + PD V+FNIL
Sbjct: 292 MVERNVMPDTVTFNIL 307


>ref|XP_002319048.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 44/142 (30%), Positives = 80/142 (56%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   L K   + EA+ ++ET+I     PN NT++ L+  +   +  ++A KLF  M  +G
Sbjct: 193 LVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG 252

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P++ ++N+L+    K+G +D  + +L  M+   L PD VTY  +++ FC  G  + A
Sbjct: 253 C-APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDA 311

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++  EM S  + PDL++++I+
Sbjct: 312 QKLLEEMRSYGLLPDLMTYSIV 333



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 37/136 (27%), Positives = 74/136 (54%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           KS  + EAK L   +      P+  T+  L++ F ++   +DA KL   M+  G   P++
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLL-PDL 327

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
           +T++++L    K G LD    +L+ M +  + P+   Y ++++  C+ G+ E A E+F+ 
Sbjct: 328 MTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSN 387

Query: 688 MTSQEIGPDLVSFNIL 735
           +  + I PD+V++ ++
Sbjct: 388 LFVKGIQPDVVTYTVM 403



 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 39/142 (27%), Positives = 69/142 (48%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           +   L K K ++EA +    ++     PN  T+  +L  F       +A  LF  M ER 
Sbjct: 123 IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN 182

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+ +TFN+L+   SK G +   + + E M +  + P+  TY+ ++  +CS  + + A
Sbjct: 183 VM-PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++F  M  +   P + S+NIL
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNIL 263



 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 35/136 (25%), Positives = 67/136 (49%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           K+K +   K L++ ++     P+  T+  ++    K      A++L   M+E+G  KPN+
Sbjct: 60  KAKIIDAVK-LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGC-KPNV 117

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
           + ++ ++    K   +      L  M +  + P+ VTY  ++  FC+ G    A  +F +
Sbjct: 118 VVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQ 177

Query: 688 MTSQEIGPDLVSFNIL 735
           M  + + PD V+FNIL
Sbjct: 178 MVERNVMPDTVTFNIL 193


>ref|XP_002267809.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17670-like [Vitis vinifera]
          Length = 458

 Score = 83.2 bits (204), Expect = 8e-14
 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
 Frame = +1

Query: 322 LLKSKTLSEAKDLYETIITTRRRP-NFNTHHVLLRKFAKNTMKEDALKLFLFM-KERGAF 495
           +  S  L +AK L+ +I TT   P +F  H+ LL+ ++  +   D++     M K + +F
Sbjct: 136 IFNSPNLLDAKKLFASITTTSTTPLDFRFHNALLQSYSSISTVNDSISFLRHMIKSQPSF 195

Query: 496 KPNIITFNVLLADCSKT--GELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
            P   T+++LL+   K+   +L  V + L LM  H   PDRVT D+ VR+ CSAG  E A
Sbjct: 196 SPERSTYHILLSQSCKSPNSDLSAVHQTLNLMVTHGFPPDRVTTDIAVRSLCSAGREEHA 255

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            E+  E++ +   PD  ++N +
Sbjct: 256 IELVKELSLKHSPPDSFTYNFI 277


>ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
           gi|300161789|gb|EFJ28403.1| hypothetical protein
           SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score = 83.2 bits (204), Expect = 8e-14
 Identities = 44/138 (31%), Positives = 75/138 (54%)
 Frame = +1

Query: 322 LLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKP 501
           L++   +++A+ +YE ++     P+  T+  L+  F+     + A +LF  M  RG  +P
Sbjct: 527 LMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGC-RP 585

Query: 502 NIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIF 681
           N +T+N LL    K  + D    +   M +    PDRVTY  ++  FC+ G+ E+A E+F
Sbjct: 586 NAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVF 645

Query: 682 TEMTSQEIGPDLVSFNIL 735
            EM S+   PD+V++N L
Sbjct: 646 DEMVSKGHDPDVVAYNCL 663



 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 42/130 (32%), Positives = 71/130 (54%)
 Frame = +1

Query: 346 EAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNVL 525
           +A +L+ET+I+   RPN  T++ LL    K +  ++A +LF  M ERG   P+ +T+  L
Sbjct: 570 QAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGC-DPDRVTYTTL 628

Query: 526 LADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQEI 705
           L      G+++    + + M      PD V Y+ +++ F  AG+   A ++F  M S++ 
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 706 GPDLVSFNIL 735
            PD VS NI+
Sbjct: 689 KPDTVSHNIM 698



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
 Frame = +1

Query: 340  LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
            + +A ++++ +++    P+   ++ LL+ F +     +A +LF  M  R   KP+ ++ N
Sbjct: 638  IEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC-KPDTVSHN 696

Query: 520  VLLADCSKTGELDMVERILELMT-DHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTS 696
            +++   SK   LD    + E M  DH   PD VTY+ ++   C       A ++F E+  
Sbjct: 697  IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 756

Query: 697  QEIGPDLVSFNIL 735
             ++ PD  +FN+L
Sbjct: 757  LKLSPDPHAFNVL 769



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRR-PNFNTHHVLLRKFAKNTMKEDALKLFLFMKER 486
           L   L K+K + +A  ++ T+++ R   P+  ++ +L+  F K      A KL+  M + 
Sbjct: 452 LLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 511

Query: 487 GAFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHER 666
               PN+ T+N  L    + G +   + + E M      PD +TY  ++  F  A +H++
Sbjct: 512 NCV-PNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQ 570

Query: 667 ACEIFTEMTSQEIGPDLVSFNIL 735
           A E+F  M S+   P+ V++N L
Sbjct: 571 AHELFETMISRGCRPNAVTYNCL 593


>ref|XP_006405989.1| hypothetical protein EUTSA_v10028308mg [Eutrema salsugineum]
           gi|557107127|gb|ESQ47442.1| hypothetical protein
           EUTSA_v10028308mg [Eutrema salsugineum]
          Length = 823

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 44/142 (30%), Positives = 77/142 (54%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L    +K    SEA+DLYE ++     PN  T++ ++  F K    ++A ++F  M  +G
Sbjct: 339 LISAFVKEVKFSEAEDLYEEMLHRGIVPNAITYNSMIDGFCKKNRLDEAKQMFDSMASKG 398

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+++TFN L+  C +T  +D    +L  MT   ++ D VT++ ++  F   G+    
Sbjct: 399 C-SPDVVTFNTLIDGCCRTKRIDDGMDLLHEMTRRRIVADTVTFNTLIHGFFQVGDLNGV 457

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            +IF EMTS ++ P++V+ N L
Sbjct: 458 LDIFQEMTSTDVRPNIVTLNTL 479



 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 38/142 (26%), Positives = 76/142 (53%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L    +K +  SEA++LYE ++     P+  T++ ++  F K    ++A ++F  M   G
Sbjct: 525 LISAFVKERKFSEAEELYEKMLHRGIVPDTITYNSMINGFCKQNRLDEAKQMFDLMVSNG 584

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
               +++T+N L+  C +T  +D    +L  M+   ++ + VTY+ ++   C  G+   A
Sbjct: 585 C-SSDVVTYNTLIDGCCRTKRVDDGMDLLHEMSRRQIVANTVTYNTLIHGLCQVGDLNAA 643

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++F  M S  + PD++++NIL
Sbjct: 644 QDLFLNMNSHGVCPDILTYNIL 665



 Score = 67.4 bits (163), Expect = 5e-09
 Identities = 40/142 (28%), Positives = 72/142 (50%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           +  +L K   L +A++L+  +      PN  T++ ++  F  N    DA +L   M +R 
Sbjct: 269 IIDRLCKDGRLVDAQNLFIEMREKGIYPNVVTYNCMIDAFCNNGRWIDAERLLRDMIKR- 327

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+++TFN L++   K  +    E + E M    ++P+ +TY+ M+  FC     + A
Sbjct: 328 EISPDVVTFNSLISAFVKEVKFSEAEDLYEEMLHRGIVPNAITYNSMIDGFCKKNRLDEA 387

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++F  M S+   PD+V+FN L
Sbjct: 388 KQMFDSMASKGCSPDVVTFNTL 409



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 34/136 (25%), Positives = 70/136 (51%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           K   L EAK +++ +++     +  T++ L+    +    +D + L   M  R     N 
Sbjct: 566 KQNRLDEAKQMFDLMVSNGCSSDVVTYNTLIDGCCRTKRVDDGMDLLHEMSRR-QIVANT 624

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
           +T+N L+    + G+L+  + +   M  H + PD +TY++++   C  G+ ++A E+F  
Sbjct: 625 VTYNTLIHGLCQVGDLNAAQDLFLNMNSHGVCPDILTYNILLDGLCDNGKLKKALEMFEV 684

Query: 688 MTSQEIGPDLVSFNIL 735
           M   +I  D+VS++I+
Sbjct: 685 MLKNKIDVDIVSYSII 700



 Score = 63.5 bits (153), Expect = 7e-08
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG---------- 489
           L+   D+++ + +T  RPN  T + LL     N   E AL +F  M++            
Sbjct: 454 LNGVLDIFQEMTSTDVRPNIVTLNTLLDGLCNNGKLEKALTIFEVMQKSKMDLDTSHAFT 513

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
             +P++ T+++L++   K  +    E + E M    ++PD +TY+ M+  FC     + A
Sbjct: 514 GVEPDVQTYSILISAFVKERKFSEAEELYEKMLHRGIVPDTITYNSMINGFCKQNRLDEA 573

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++F  M S     D+V++N L
Sbjct: 574 KQMFDLMVSNGCSSDVVTYNTL 595


>ref|XP_006300886.1| hypothetical protein CARUB_v10019976mg [Capsella rubella]
           gi|482569596|gb|EOA33784.1| hypothetical protein
           CARUB_v10019976mg [Capsella rubella]
          Length = 622

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 42/137 (30%), Positives = 77/137 (56%)
 Frame = +1

Query: 325 LKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPN 504
           +K    +EA++LY  +++    PN  T++ ++  F K+   +DA ++F  M  +G   PN
Sbjct: 339 VKEGKFTEAEELYADMLSRGIVPNTVTYNSMVDGFCKHNRLDDANRMFDLMASKGC-SPN 397

Query: 505 IITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFT 684
           ++TFN L+  C     +D   ++L  M+   L+ D ++Y+ ++   C  G+   A ++F 
Sbjct: 398 VVTFNTLIHGCCMAKMVDDGMKLLREMSRRGLVADTISYNTLIHGLCQVGKLNAAQDLFR 457

Query: 685 EMTSQEIGPDLVSFNIL 735
           EMTSQ + PD ++ NIL
Sbjct: 458 EMTSQGVYPDTITCNIL 474



 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 37/132 (28%), Positives = 63/132 (47%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
           +SEA  L + +  T   PN  T   L+    +     +AL L   M + G   PN++T+ 
Sbjct: 169 ISEAVALSDRMAETGCTPNVVTFTTLMNGLCREGRVLEALALLDRMVKNG-HGPNVVTYR 227

Query: 520 VLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQ 699
            ++    K G+ D    +L  M +  +  D V Y+ ++   C  G+H  A  +FTEM  +
Sbjct: 228 TIVNGMCKMGDTDSALNLLRKMDESHIKADLVIYNPIIDRLCKEGKHSDAQNLFTEMREK 287

Query: 700 EIGPDLVSFNIL 735
            I P +V++N +
Sbjct: 288 GIFPSVVTYNCM 299



 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 40/142 (28%), Positives = 68/142 (47%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           +  +L K    S+A++L+  +      P+  T++ ++     +    DA +L   M ER 
Sbjct: 264 IIDRLCKEGKHSDAQNLFTEMREKGIFPSVVTYNCMIDASCSSGRWSDAERLLRDMIER- 322

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+I TFN L+    K G+    E +   M    ++P+ VTY+ MV  FC     + A
Sbjct: 323 QISPDIFTFNALINASVKEGKFTEAEELYADMLSRGIVPNTVTYNSMVDGFCKHNRLDDA 382

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
             +F  M S+   P++V+FN L
Sbjct: 383 NRMFDLMASKGCSPNVVTFNTL 404



 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 36/142 (25%), Positives = 65/142 (45%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   L +   + EA  L + ++     PN  T+  ++    K    + AL L   M E  
Sbjct: 194 LMNGLCREGRVLEALALLDRMVKNGHGPNVVTYRTIVNGMCKMGDTDSALNLLRKMDE-S 252

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
             K +++ +N ++    K G+    + +   M +  + P  VTY+ M+ A CS+G    A
Sbjct: 253 HIKADLVIYNPIIDRLCKEGKHSDAQNLFTEMREKGIFPSVVTYNCMIDASCSSGRWSDA 312

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
             +  +M  ++I PD+ +FN L
Sbjct: 313 ERLLRDMIERQISPDIFTFNAL 334


>gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 40/132 (30%), Positives = 75/132 (56%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
           L EAK ++E +I+    PN  T++ L++ F K    E+ ++LF  M +RG    N +T+N
Sbjct: 360 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG-NTVTYN 418

Query: 520 VLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQ 699
            L+    + G+ DM ++I + M    + PD +TY +++   C  G+ E+A  +F  +   
Sbjct: 419 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 478

Query: 700 EIGPDLVSFNIL 735
           ++ PD+ ++NI+
Sbjct: 479 KMEPDIYTYNIM 490



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 40/131 (30%), Positives = 66/131 (50%)
 Frame = +1

Query: 343 SEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNV 522
           S+A  L   +I  +  PN  T   L+  F K     +A KL+  M +R +  P+I T++ 
Sbjct: 291 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFTYSS 349

Query: 523 LLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQE 702
           L+        LD  + + ELM   D  P+ VTY+ +++ FC A   E   E+F EM+ + 
Sbjct: 350 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 409

Query: 703 IGPDLVSFNIL 735
           +  + V++N L
Sbjct: 410 LVGNTVTYNTL 420



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 36/134 (26%), Positives = 67/134 (50%)
 Frame = +1

Query: 334 KTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIIT 513
           K +SEA  L + +     +PN  T + L+     +    +A+ L   M  RG  +P++ T
Sbjct: 148 KRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGC-QPDLFT 206

Query: 514 FNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMT 693
           +  ++    K G++D+   +L+ M    +  D V Y  ++ A C+      A  +FTEM 
Sbjct: 207 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 266

Query: 694 SQEIGPDLVSFNIL 735
           ++ I P++V++N L
Sbjct: 267 NKGIRPNVVTYNSL 280


>ref|NP_176481.2| pentatricopeptide repeat protein RPF3 [Arabidopsis thaliana]
           gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
           gi|332195902|gb|AEE34023.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 40/132 (30%), Positives = 75/132 (56%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
           L EAK ++E +I+    PN  T++ L++ F K    E+ ++LF  M +RG    N +T+N
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG-NTVTYN 434

Query: 520 VLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQ 699
            L+    + G+ DM ++I + M    + PD +TY +++   C  G+ E+A  +F  +   
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 700 EIGPDLVSFNIL 735
           ++ PD+ ++NI+
Sbjct: 495 KMEPDIYTYNIM 506



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 40/131 (30%), Positives = 66/131 (50%)
 Frame = +1

Query: 343 SEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNV 522
           S+A  L   +I  +  PN  T   L+  F K     +A KL+  M +R +  P+I T++ 
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFTYSS 365

Query: 523 LLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQE 702
           L+        LD  + + ELM   D  P+ VTY+ +++ FC A   E   E+F EM+ + 
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query: 703 IGPDLVSFNIL 735
           +  + V++N L
Sbjct: 426 LVGNTVTYNTL 436



 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 36/134 (26%), Positives = 67/134 (50%)
 Frame = +1

Query: 334 KTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIIT 513
           K +SEA  L + +     +PN  T + L+     +    +A+ L   M  RG  +P++ T
Sbjct: 164 KRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGC-QPDLFT 222

Query: 514 FNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMT 693
           +  ++    K G++D+   +L+ M    +  D V Y  ++ A C+      A  +FTEM 
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMD 282

Query: 694 SQEIGPDLVSFNIL 735
           ++ I P++V++N L
Sbjct: 283 NKGIRPNVVTYNSL 296


>emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 40/132 (30%), Positives = 75/132 (56%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
           L EAK ++E +I+    PN  T++ L++ F K    E+ ++LF  M +RG    N +T+N
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG-NTVTYN 434

Query: 520 VLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQ 699
            L+    + G+ DM ++I + M    + PD +TY +++   C  G+ E+A  +F  +   
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494

Query: 700 EIGPDLVSFNIL 735
           ++ PD+ ++NI+
Sbjct: 495 KMEPDIYTYNIM 506



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 40/131 (30%), Positives = 66/131 (50%)
 Frame = +1

Query: 343 SEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNV 522
           S+A  L   +I  +  PN  T   L+  F K     +A KL+  M +R +  P+I T++ 
Sbjct: 307 SDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR-SIDPDIFTYSS 365

Query: 523 LLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQE 702
           L+        LD  + + ELM   D  P+ VTY+ +++ FC A   E   E+F EM+ + 
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 425

Query: 703 IGPDLVSFNIL 735
           +  + V++N L
Sbjct: 426 LVGNTVTYNTL 436


>ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
           gi|300153779|gb|EFJ20416.1| hypothetical protein
           SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 44/138 (31%), Positives = 76/138 (55%)
 Frame = +1

Query: 322 LLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKP 501
           L++   +++A+ +YE +I+    P+  T+  L+  F+     + A +LF  M  RG  +P
Sbjct: 202 LMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGC-RP 260

Query: 502 NIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIF 681
           N +T+N LL    K  + D    +   M +    PD+VTY  ++  FC+ G+ E+A E+F
Sbjct: 261 NAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVF 320

Query: 682 TEMTSQEIGPDLVSFNIL 735
            EM S+   PD+V++N L
Sbjct: 321 DEMVSKGHDPDVVAYNCL 338



 Score = 73.6 bits (179), Expect = 7e-11
 Identities = 42/130 (32%), Positives = 70/130 (53%)
 Frame = +1

Query: 346 EAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNVL 525
           +A +L+E +I+   RPN  T++ LL    K +  ++A +LF  M ERG   P+ +T+  L
Sbjct: 245 QAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGC-DPDKVTYTTL 303

Query: 526 LADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQEI 705
           L      G+++    + + M      PD V Y+ +++ F  AG+   A ++F  M S+E 
Sbjct: 304 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSREC 363

Query: 706 GPDLVSFNIL 735
            PD VS NI+
Sbjct: 364 KPDTVSHNIM 373



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
 Frame = +1

Query: 340 LSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFN 519
           + +A ++++ +++    P+   ++ LL+ F +     +A +LF  M  R   KP+ ++ N
Sbjct: 313 IEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSREC-KPDTVSHN 371

Query: 520 VLLADCSKTGELDMVERILELMT-DHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTS 696
           +++   SK   LD    + E M  DH   PD VTY+ ++   C       A ++F E+  
Sbjct: 372 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 431

Query: 697 QEIGPDLVSFNIL 735
            ++ PD  +FN+L
Sbjct: 432 LKLSPDPHAFNVL 444



 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRR-PNFNTHHVLLRKFAKNTMKEDALKLFLFMKER 486
           L   L K+K + +A  ++ T+++ R   P+  ++ +L+  F K      A KL+  M + 
Sbjct: 127 LLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDL 186

Query: 487 GAFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHER 666
               PN+ T+N  L    + G +   + + E M      PD +TY  ++  F  A +H++
Sbjct: 187 NCV-PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQ 245

Query: 667 ACEIFTEMTSQEIGPDLVSFNIL 735
           A E+F  M S+   P+ V++N L
Sbjct: 246 AHELFEAMISRGCRPNAVTYNCL 268


>ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
           gi|302806735|ref|XP_002985099.1| hypothetical protein
           SELMODRAFT_121414 [Selaginella moellendorffii]
           gi|300147309|gb|EFJ13974.1| hypothetical protein
           SELMODRAFT_121414 [Selaginella moellendorffii]
           gi|300161506|gb|EFJ28121.1| hypothetical protein
           SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 45/142 (31%), Positives = 77/142 (54%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   L KS  + EA+ L ET++  + RPN  T++ L+  + K      A +L   M + G
Sbjct: 214 LIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSG 273

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+++TFN L++   +  ++D    +L LM      P+ VTY++++   C AG    A
Sbjct: 274 TH-PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEA 332

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
           CE+ +EM  + I PD++++N L
Sbjct: 333 CELLSEMDGRGILPDIITYNSL 354



 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 34/126 (26%), Positives = 65/126 (51%)
 Frame = +1

Query: 349 AKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNIITFNVLL 528
           A  L E +I +   P+  T + L+  F + +  + A ++   MK +G   PN++T+NVL+
Sbjct: 262 AHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK-KGLCAPNLVTYNVLI 320

Query: 529 ADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTEMTSQEIG 708
           +     G  +    +L  M    ++PD +TY+ ++  FC   + E+A +I   M  + + 
Sbjct: 321 SGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVI 380

Query: 709 PDLVSF 726
           PD +S+
Sbjct: 381 PDGISY 386



 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 35/142 (24%), Positives = 66/142 (46%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           + Q L  +  LS A   +   +     P+    ++L+    K     +A ++   M ERG
Sbjct: 146 IVQALCNTGNLSRAMQYFRESVECA--PDSVLFNILVHGLCKANQLSEARQMIEEMSERG 203

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
              P+++T+N L+    K+  ++   ++LE M    + P+ VTY+ ++  +C  G    A
Sbjct: 204 IV-PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLA 262

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
            ++   M      PD+V+FN L
Sbjct: 263 HQLIERMIQSGTHPDVVTFNSL 284


>gb|AAM62704.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRP-NFNTHHVLLRKFAKNTMKEDALKLFL-FMKERGAFKP 501
           KS  LS+AK L+ +I  T R P +   H+ +L+ +A   + +D +K F   MK +  F+P
Sbjct: 61  KSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYASIAVVDDTVKFFQHIMKSQPNFRP 120

Query: 502 NIITFNVLLADCSKTGE--LDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACE 675
              TF +LL+   +  +  +  V R+L LM ++ L PD+VT D+ VR+ C  G  + A +
Sbjct: 121 GRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKD 180

Query: 676 IFTEMTSQEIGPDLVSFNIL 735
           +  E+T +   PD  ++N L
Sbjct: 181 LMKELTEKHSPPDTYTYNFL 200



 Score = 63.2 bits (152), Expect = 9e-08
 Identities = 38/142 (26%), Positives = 67/142 (47%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L   +  SK L EA  L   +     +P+   ++ +++ F   +   +A+ ++  MKE G
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG 295

Query: 490 AFKPNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERA 669
             +P+ IT+N L+   SK G ++     L+ M D    PD  TY  ++   C  GE   A
Sbjct: 296 V-EPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGA 354

Query: 670 CEIFTEMTSQEIGPDLVSFNIL 735
             +  EM ++   P+  ++N L
Sbjct: 355 LSLLEEMEARGCAPNDCTYNTL 376


>ref|XP_004304863.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Fragaria vesca subsp. vesca]
          Length = 592

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 39/136 (28%), Positives = 77/136 (56%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           K K +  A++L++ I      P+  T++ L+  ++K+ M E+A + +  M ERG   P  
Sbjct: 365 KKKMMKRARELFDDIGRQGLEPSVITYNTLIDAYSKDGMIEEAFEFYNSMLERGV-SPTT 423

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
            TFN  ++   + G+++M  ++L  M  + L  DR+TY++ +  +C  G+  +A E+F E
Sbjct: 424 STFNCRISGLCRQGKMEMALKLLHEMEGNGLRADRITYNIFIDGYCKEGDSRKAQELFNE 483

Query: 688 MTSQEIGPDLVSFNIL 735
           M  + + P+ +++N L
Sbjct: 484 MIKKRLSPNHLTYNFL 499



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 33/139 (23%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
 Frame = +1

Query: 310 LTQQLLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERG 489
           L + L+K   +   + +Y  +I  R +PN  T ++++R   K    E+A  + +   +  
Sbjct: 180 LLRALVKEGEVGSVEYVYREMIRRRIKPNLYTFNMVIRGLCKVGKLEEAKDVVVNDMKAW 239

Query: 490 AFKPNIITFNVLLADCSKTGELDMV---ERILELMTDHDLMPDRVTYDLMVRAFCSAGEH 660
              PN++++N L+    K G L  +   + IL+ M ++ + P++ TY++++  F      
Sbjct: 240 GILPNVVSYNTLIDGYCKFGGLGRMYKADAILKEMKENSIQPNKCTYNILISGFGKDENI 299

Query: 661 ERACEIFTEMTSQEIGPDL 717
             A ++F  +  QE+ PD+
Sbjct: 300 PAAIKVFEAIVKQELKPDV 318


>ref|XP_004289096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Fragaria vesca subsp. vesca]
          Length = 608

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 46/136 (33%), Positives = 73/136 (53%)
 Frame = +1

Query: 328 KSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFKPNI 507
           K K L EA++L++TI       N  T + L+  + KN M+E+A  L   M ER  F PN 
Sbjct: 381 KKKMLKEARELFDTICERGLVANVITFNTLIDGYCKNEMEEEAYALHNMMIERRVF-PNT 439

Query: 508 ITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACEIFTE 687
            TFN L+A     G ++  ++ L+ M    +  D +TYD+++ A C  GE  +A  +  E
Sbjct: 440 STFNCLIAGSLTKGNIETAKKFLQQMEAKGVKADCITYDILIDALCKDGEPRKAERLLNE 499

Query: 688 MTSQEIGPDLVSFNIL 735
           M ++ + P  V++N L
Sbjct: 500 MFTKGLSPRHVTYNTL 515



 Score = 57.8 bits (138), Expect = 4e-06
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
 Frame = +1

Query: 322 LLKSKTLSEAKDLYETIITTRRRPNFNTHHVLLRKFAKNTMKEDALKLFLFMKERGAFK- 498
           L K   L++AKD+ + +      PN  T++ ++  + K        K    +KE  A K 
Sbjct: 236 LCKVGKLNKAKDVMDDMKAWGVAPNVVTYNTIIGGYCKLGGLGKMHKADAMLKEMVASKI 295

Query: 499 -PNIITFNVLLADCSKTGELDMVERILELMTDHDLMPDRVTYDLMVRAFCSAGEHERACE 675
            P+  TFN+L+    K  ++    ++ E M    L P+ VTY+ ++   C  G  E AC 
Sbjct: 296 CPSETTFNILIDGSCKDDDVAAAFKVFEEMRREGLKPNVVTYNSLINGLCCDGRLEEACG 355

Query: 676 IFTEMTSQEIGPDLVSFNIL 735
           +  EM    + P++ ++N L
Sbjct: 356 LRDEMLGLGLKPEIATYNAL 375