BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029259
         (436 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003611862.1| Pentatricopeptide repeat-containing protein ...   122   4e-26
ref|XP_006434069.1| hypothetical protein CICLE_v10003712mg [Citr...   120   2e-25
gb|ESW28860.1| hypothetical protein PHAVU_002G024100g [Phaseolus...   118   7e-25
ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arab...   118   7e-25
ref|XP_002980145.1| hypothetical protein SELMODRAFT_112044 [Sela...   117   1e-24
emb|CBI33742.3| unnamed protein product [Vitis vinifera]              116   3e-24
ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containi...   116   3e-24
ref|XP_004959653.1| PREDICTED: pentatricopeptide repeat-containi...   116   4e-24
gb|AFG66680.1| hypothetical protein 0_14992_02, partial [Pinus t...   115   5e-24
ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
ref|XP_001776621.1| predicted protein [Physcomitrella patens] gi...   115   6e-24
gb|EXC06699.1| hypothetical protein L484_021537 [Morus notabilis]     114   1e-23
ref|XP_006413323.1| hypothetical protein EUTSA_v10024921mg [Eutr...   114   1e-23
dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]    114   1e-23
ref|XP_002983643.1| hypothetical protein SELMODRAFT_119022 [Sela...   114   1e-23
ref|XP_006849644.1| hypothetical protein AMTR_s00024p00225420 [A...   114   1e-23
ref|NP_173004.1| pentatricopeptide repeat-containing protein [Ar...   114   1e-23
ref|XP_006306315.1| hypothetical protein CARUB_v10012185mg [Caps...   114   2e-23
ref|XP_006282784.1| hypothetical protein CARUB_v10006372mg, part...   114   2e-23
gb|EMJ08834.1| hypothetical protein PRUPE_ppa021864mg [Prunus pe...   114   2e-23

>ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513197|gb|AES94820.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  122 bits (307), Expect = 4e-26
 Identities = 61/144 (42%), Positives = 86/144 (59%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           +SE     WN MI  Y+K GR  +A++MFR M +E   +P+ FT  G+LS     G    
Sbjct: 195 ISERTLVSWNSMINGYSKMGRSEEAVLMFREM-QEVGLEPDVFTLVGLLSVSTKHGNFDL 253

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMN 74
           GR +H H+V +G  +D     AL+DMY KCG L+ A+ VFD+M  +  V+   MI+A+ N
Sbjct: 254 GRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYAN 313

Query: 73  HGLVDDAWDVFRSMPERTVVTWTS 2
           HGL+D A + F  MP + VV+W S
Sbjct: 314 HGLIDCALEFFNQMPGKNVVSWNS 337



 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 47/135 (34%), Positives = 74/135 (54%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M  +N   WN +I  + ++G + +A+ +F RM   G    N  T   +LS+C+H G L 
Sbjct: 326 QMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG-VMANDTTLVAILSSCSHMGDLA 384

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G+  H +I ++   L      A++DMY KCGAL+ A  VF  MP ++ V+ NV+I A  
Sbjct: 385 LGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALA 444

Query: 76  NHGLVDDAWDVFRSM 32
            HG   +A ++F  M
Sbjct: 445 LHGYGKEAIEMFEKM 459



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 43/137 (31%), Positives = 73/137 (53%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           ++ + N  ++N +I  Y+       +++++RRM+ +G   PN FT   VL ACA K    
Sbjct: 93  QIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDG-ILPNQFTIPFVLKACAAKSCYW 151

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G  +H    + G G   C   A++++Y  CG +  AR+VFD +  R+ V+ N MI+ + 
Sbjct: 152 LGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYS 211

Query: 76  NHGLVDDAWDVFRSMPE 26
             G  ++A  +FR M E
Sbjct: 212 KMGRSEEAVLMFREMQE 228



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           M E+N   WN +I A A  G   +A+ MF +M   G   P+  TF G+LSAC+H G +  
Sbjct: 428 MPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASG-VCPDEITFTGLLSACSHSGLVDT 486

Query: 253 GRMIHRHIVESGYGL--DECSGTALVDMYGKCGALRDARQVFDRMPTR-STVTCNVMISA 83
           G+  +  I+   +G+  D      +VD+ G+ G L +A  +  +MP +   V  + ++ A
Sbjct: 487 GQH-YFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGA 545

Query: 82  FMNHG 68
              +G
Sbjct: 546 CRTYG 550


>ref|XP_006434069.1| hypothetical protein CICLE_v10003712mg [Citrus clementina]
           gi|557536191|gb|ESR47309.1| hypothetical protein
           CICLE_v10003712mg [Citrus clementina]
          Length = 438

 Score =  120 bits (300), Expect = 2e-25
 Identities = 68/150 (45%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           MSE +   W  MI A ++Q R ++A+ MF RML EG F PN FT   VL AC  +  L  
Sbjct: 232 MSERDVVSWTAMITACSQQARGDEAIFMFSRMLSEG-FLPNEFTVCSVLKACGEERALKL 290

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMN 74
           GR +H  IV+  Y  D    T+LVDMY KCG + D+R+VFD M  R+TVT   +IS +  
Sbjct: 291 GRQLHAAIVKKLYKDDVFIRTSLVDMYAKCGEILDSRRVFDEMGNRNTVTWTSIISGYAR 350

Query: 73  HGLVDDAWDVFR------SMPERTVVTWTS 2
            GL ++A  +FR      SMPER + TW S
Sbjct: 351 EGLGEEAIGLFRASQVFDSMPERNLFTWKS 380


>gb|ESW28860.1| hypothetical protein PHAVU_002G024100g [Phaseolus vulgaris]
          Length = 667

 Score =  118 bits (296), Expect = 7e-25
 Identities = 57/144 (39%), Positives = 89/144 (61%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           +S+     WN MIA Y+K G  + A+++   M  +G  +P+ FTF  +LS  +  G L  
Sbjct: 198 ISDRTLVSWNSMIAGYSKIGHCHGAVMLLEEMQHQG-VQPDVFTFVSLLSVSSKNGNLDL 256

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMN 74
           GR +H +I+ +   +D     AL+DMYGKCG L+ A++VFDRM  ++ V+   M++A+ N
Sbjct: 257 GRFVHLYIITTDVQIDSIVTNALIDMYGKCGNLQYAKRVFDRMLDKNVVSWTCMVNAYAN 316

Query: 73  HGLVDDAWDVFRSMPERTVVTWTS 2
           HGL+D+A  +F  MP + VV+W S
Sbjct: 317 HGLIDNAVQMFNQMPVKNVVSWNS 340



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 47/135 (34%), Positives = 73/135 (54%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M  +N   WN +I  + ++G + +AM +F RM   G   P+  T   +LS C+H G L 
Sbjct: 329 QMPVKNVVSWNSIIWCHVQEGLYTEAMQLFYRMCISGVI-PDDGTLVNILSCCSHMGDLA 387

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G+  H +I  +   +      +L+DMY KCGAL  A  +F  MP ++ V+ NV+I A  
Sbjct: 388 LGKQAHNYICGNNITVSVTLCNSLIDMYAKCGALDTAMDIFFGMPEKNVVSWNVIIGALA 447

Query: 76  NHGLVDDAWDVFRSM 32
            HG  ++A + FR M
Sbjct: 448 LHGFGEEAIENFRRM 462



 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 36/123 (29%), Positives = 65/123 (52%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           ++ + N  ++N +I  Y+      ++++++R+M+R G   PN FTF  V  ACA K    
Sbjct: 96  QIPQPNKFMYNHLIRGYSNIDDSINSLLLYRQMVRAG-LMPNQFTFPFVFKACAAKPFYW 154

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
              ++H   ++ G G   C   +++ +Y  C  +  ARQVFD +  R+ V+ N MI+ + 
Sbjct: 155 EAVIVHAQAIKLGMGYKACVQNSILAVYVACRLIPSARQVFDDISDRTLVSWNSMIAGYS 214

Query: 76  NHG 68
             G
Sbjct: 215 KIG 217



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           M E+N   WN +I A A  G   +A+  FRRM   G   P+  TF G+LSAC+H G +  
Sbjct: 431 MPEKNVVSWNVIIGALALHGFGEEAIENFRRMQASG-LCPDEITFTGLLSACSHSGLVDM 489

Query: 253 GRMIHRHIVESGYGL--DECSGTALVDMYGKCGALRDARQVFDRMPTR-STVTCNVMISA 83
           GR  +   + S +G+  +      +VD+ G+ G + +A  +  +MP +   V    ++ A
Sbjct: 490 GR-YYFDTMSSTFGISPNVAHYACMVDLLGRGGFIGEAMTLIQKMPVKPDVVVWGALLGA 548

Query: 82  FMNHGLVDDAWDVFRSMPE 26
              +G ++ A  + + + E
Sbjct: 549 CRTYGNLEIAKQIMKQLLE 567


>ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
           lyrata] gi|297313453|gb|EFH43876.1| hypothetical protein
           ARALYDRAFT_354257 [Arabidopsis lyrata subsp. lyrata]
          Length = 758

 Score =  118 bits (296), Expect = 7e-25
 Identities = 57/137 (41%), Positives = 87/137 (63%)
 Frame = -1

Query: 427 EENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGR 248
           E +P  WN +I+ YA+ G++ DAM ++ +M  +G  KP+ FTF  VL AC   G +  G 
Sbjct: 388 ESSPFAWNSLISGYAELGQYEDAMALYFQMAEDG-VKPDRFTFPRVLKACGGIGSVQIGE 446

Query: 247 MIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHG 68
            IHR +V++G+G D     ALVDMY KCG +  AR VFD +P +  V+ N M++ +++HG
Sbjct: 447 AIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKDYVSWNSMLTGYLHHG 506

Query: 67  LVDDAWDVFRSMPERTV 17
           L+ +A D+FR M +  +
Sbjct: 507 LLHEALDIFRLMVQNGI 523



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 35/109 (32%), Positives = 55/109 (50%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           WN M+  Y   G  ++A+ +FR M++ G   P+    + VL+         HGR +H  +
Sbjct: 495 WNSMLTGYLHHGLLHEALDIFRLMVQNG-IDPDKVAISSVLARVL---SFKHGRQLHGWV 550

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISA 83
           +  G   +     AL+ +Y K G L  A  +FD+M  R TV+ N +ISA
Sbjct: 551 IRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISA 599


>ref|XP_002980145.1| hypothetical protein SELMODRAFT_112044 [Selaginella moellendorffii]
           gi|300152372|gb|EFJ19015.1| hypothetical protein
           SELMODRAFT_112044 [Selaginella moellendorffii]
          Length = 434

 Score =  117 bits (294), Expect = 1e-24
 Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACA--HKGGL 260
           M   N   WN MI AYA+ GR  DA+ +FR +  EG F+ N  TF  ++ AC+   +G L
Sbjct: 71  MPARNIVSWNAMIEAYAQHGRGADAIAVFRLLELEGTFQANKITFLALIEACSCSWQGNL 130

Query: 259 GHGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAF 80
           G GR+ HR  + SG+  DE    +LV+MY KCG++ +ARQVFD +  R+ ++C+VMI+  
Sbjct: 131 GTGRLFHRRAIASGFHTDESLKNSLVNMYSKCGSVEEARQVFDSIAPRTAISCSVMITTL 190

Query: 79  MNHGLVDDAWDVFRSMPE 26
             +G   +A +++R M E
Sbjct: 191 AQNGFYREALELYREMQE 208



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 46/123 (37%), Positives = 72/123 (58%)
 Frame = -1

Query: 400 MIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHIVES 221
           MI   A+ G + +A+ ++R M  EG  + N+ TF  +L A A+   LG GR IH  I++ 
Sbjct: 186 MITTLAQNGFYREALELYREMQEEG-LESNNMTFLSLLEASANLTALGQGRRIHASIIDY 244

Query: 220 GYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAWDVF 41
           G   D    TAL+ MYGKC  L +AR+VF+ M  ++ V    +I+A+  HG  +++ ++F
Sbjct: 245 GLARDLLIQTALMYMYGKCAGLDEAREVFESMERKNVVAWTSIIAAYSQHGHCEESLELF 304

Query: 40  RSM 32
           R M
Sbjct: 305 RRM 307



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 41/94 (43%), Positives = 49/94 (52%)
 Frame = -1

Query: 319 KPNHFTFAGVLSACAHKGGLGHGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQ 140
           K    TF   LSACA    L   R I   I  +G   D    TA+V  Y +CGA+  AR+
Sbjct: 7   KATRVTFLNALSACAAPELLAQARSIVEKITAAGMDRDVLVATAVVSAYARCGAIASARE 66

Query: 139 VFDRMPTRSTVTCNVMISAFMNHGLVDDAWDVFR 38
           VFD MP R+ V+ N MI A+  HG   DA  VFR
Sbjct: 67  VFDAMPARNIVSWNAMIEAYAQHGRGADAIAVFR 100


>emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  116 bits (291), Expect = 3e-24
 Identities = 59/134 (44%), Positives = 78/134 (58%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           M E +   WN MI  Y + G  N+A+++FRRML+    KPN  T   VLSAC   G L  
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLSACGQLGALES 208

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMN 74
           GR +H +I  +G   +   GTALVDMY KCG+L DAR VFD++  +  V  N MI  +  
Sbjct: 209 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 268

Query: 73  HGLVDDAWDVFRSM 32
           HG   +A  +F+SM
Sbjct: 269 HGFSQEALQLFKSM 282



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           K+ +++   WN MI  YA  G   +A+ +F+ M R G   P + TF G+LSAC H G + 
Sbjct: 250 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVT 308

Query: 256 HGRMIHRHIVESGYGLD---ECSGTALVDMYGKCGALRDARQVFDRMPTR-STVTCNVMI 89
            G  I   + +  YG++   E  G  +V++ G+ G +  A ++   M      V    ++
Sbjct: 309 EGWDIFNKMKDE-YGIEPKIEHYG-CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLL 366

Query: 88  SAFMNHGLV 62
            A   HG +
Sbjct: 367 GACRLHGKI 375


>ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  116 bits (291), Expect = 3e-24
 Identities = 59/134 (44%), Positives = 78/134 (58%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           M E +   WN MI  Y + G  N+A+++FRRML+    KPN  T   VLSAC   G L  
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLK-AKAKPNEVTVLSVLSACGQLGALES 274

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMN 74
           GR +H +I  +G   +   GTALVDMY KCG+L DAR VFD++  +  V  N MI  +  
Sbjct: 275 GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAM 334

Query: 73  HGLVDDAWDVFRSM 32
           HG   +A  +F+SM
Sbjct: 335 HGFSQEALQLFKSM 348



 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
 Frame = -1

Query: 424 ENPTV--WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHG 251
           +NP+V  W  +I  +A +G H  A+  + +ML +G  +PN FTF+ +L  C     +  G
Sbjct: 89  QNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQG-VEPNAFTFSSILKLCP----IEPG 143

Query: 250 RMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNH 71
           + +H   V+ G+  D    T L+D+Y + G +  A+Q+FD MP +S V+   M++ +  H
Sbjct: 144 KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKH 203

Query: 70  GLVDDAWDVFRSMPERTVVTW 8
           G +D A  +F  M ER  V W
Sbjct: 204 GELDAARVLFDGMEERDGVCW 224



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           K+ +++   WN MI  YA  G   +A+ +F+ M R G   P + TF G+LSAC H G + 
Sbjct: 316 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVT 374

Query: 256 HGRMIHRHIVESGYGLD---ECSGTALVDMYGKCGALRDARQVFDRMPTR-STVTCNVMI 89
            G  I   + +  YG++   E  G  +V++ G+ G +  A ++   M      V    ++
Sbjct: 375 EGWDIFNKMKDE-YGIEPKIEHYG-CMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLL 432

Query: 88  SAFMNHGLV 62
            A   HG +
Sbjct: 433 GACRLHGKI 441


>ref|XP_004959653.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Setaria italica]
          Length = 643

 Score =  116 bits (290), Expect = 4e-24
 Identities = 61/145 (42%), Positives = 84/145 (57%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M E N   WN MI  YA+ G   +   +F  M REG  + + FT   +L AC+ +G L 
Sbjct: 177 EMVERNVVSWNSMIGGYAQAGDTREVRKLFGEMRREGVLE-DKFTLVSLLLACSQEGNLE 235

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR++H H++ SG  +D   G ALVDMYGKCG L  AR+ F+ MP ++ V+   M+ A  
Sbjct: 236 FGRLVHCHMLVSGSRVDLILGNALVDMYGKCGDLWMARRCFEMMPLKNVVSWTSMLCAQA 295

Query: 76  NHGLVDDAWDVFRSMPERTVVTWTS 2
            HG  D A D F  MPER +V+W +
Sbjct: 296 KHGSADAARDWFDQMPERNIVSWNA 320



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 48/135 (35%), Positives = 73/135 (54%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M E N   WN MI+ Y + G+ ++A+ ++  M  +G   P+  T   +LSAC   G L 
Sbjct: 309 QMPERNIVSWNAMISCYVQCGQCHEALDLYNHMQSQG-LAPDEVTLVAILSACGQIGDLT 367

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G++IH +I ++    D     +LVDMY KCG +  A  +F  M  R+ V+ NV+I    
Sbjct: 368 VGKIIHLYIRDNISNPDISLVNSLVDMYAKCGQVDTAISLFSEMCHRNVVSWNVIIGGLA 427

Query: 76  NHGLVDDAWDVFRSM 32
            HG   D+  +FRSM
Sbjct: 428 MHGRALDSIMLFRSM 442



 Score = 68.6 bits (166), Expect = 8e-10
 Identities = 42/132 (31%), Positives = 60/132 (45%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           +N +I A        +A+ + R MLR G   PN FT   VL AC      GH R +H   
Sbjct: 85  YNTIIRACCNGSHPQEALRLHRGMLRRGVL-PNEFTLPFVLKACTRARAWGHARAVHAMA 143

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAW 50
           V+ G+      G AL+  Y   G+L D+R+  D M  R+ V+ N MI  +   G   +  
Sbjct: 144 VKLGFAGQVFVGNALLHSYASAGSLADSRRFLDEMVERNVVSWNSMIGGYAQAGDTREVR 203

Query: 49  DVFRSMPERTVV 14
            +F  M    V+
Sbjct: 204 KLFGEMRREGVL 215



 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M   N   WN +I   A  GR  D++++FR M+ + +F P+  TF  +LSAC+H G L 
Sbjct: 410 EMCHRNVVSWNVIIGGLAMHGRALDSIMLFRSMVSD-SFSPDEITFVALLSACSHGGLLE 468

Query: 256 HGRMIH---RHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTR-STVTCNVMI 89
            G+      RH+    + ++  +   +VD+ G+ G L  A  +   MP +   V    ++
Sbjct: 469 AGQHYFEAMRHVYNVKHEVEHYA--CMVDLLGRRGYLEKAICLIKEMPMKPDVVVWGALL 526

Query: 88  SAFMNHGLVDDAWDVFRSMPE 26
            A   HG V+    V + + E
Sbjct: 527 GACRMHGSVEIGRQVIKQLLE 547


>gb|AFG66680.1| hypothetical protein 0_14992_02, partial [Pinus taeda]
           gi|383167278|gb|AFG66681.1| hypothetical protein
           0_14992_02, partial [Pinus taeda]
           gi|383167279|gb|AFG66682.1| hypothetical protein
           0_14992_02, partial [Pinus taeda]
           gi|383167280|gb|AFG66683.1| hypothetical protein
           0_14992_02, partial [Pinus taeda]
          Length = 150

 Score =  115 bits (289), Expect = 5e-24
 Identities = 59/129 (45%), Positives = 78/129 (60%)
 Frame = -1

Query: 412 VWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRH 233
           +WN MI AYAK     +A+ +F  M   G  + +HFTFA VL  C + G L  G+ IH  
Sbjct: 4   LWNAMITAYAKNEPVEEALKLFHEMKLSG-IRADHFTFASVLPVCGNLGNLEQGKEIHHE 62

Query: 232 IVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDA 53
           I  SGY  D   G+ALVDMY KCG++ DARQVFD+MP R  ++ N MI  +  HG  ++A
Sbjct: 63  INRSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRRDVISWNSMIGGYATHGPPEEA 122

Query: 52  WDVFRSMPE 26
             +FR M +
Sbjct: 123 LRLFRRMKD 131


>ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  115 bits (289), Expect = 5e-24
 Identities = 59/145 (40%), Positives = 84/145 (57%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M++ N   WN MI  YA+ G  ++A  +F  M  +G    + FT   +L AC+ +G L 
Sbjct: 174 EMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQG-LLADVFTLVSLLFACSSEGNLE 232

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR++H H++ SG  +D   G AL+DMYGKCG L  A + FD MP ++ VT   M+ A  
Sbjct: 233 VGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQA 292

Query: 76  NHGLVDDAWDVFRSMPERTVVTWTS 2
            HG VD   D F  MPER +V+W +
Sbjct: 293 KHGSVDAVRDWFEQMPERNIVSWNA 317



 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 48/135 (35%), Positives = 74/135 (54%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M E N   WN MI+ Y + GR ++ + ++ RM R     P+ FT AGVLSAC   G L 
Sbjct: 306 QMPERNIVSWNAMISCYVQCGRLHETLDLYNRM-RSLGITPDEFTLAGVLSACGQNGDLA 364

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G+MIH ++ ++          +L+DMY +CG +  A  +F  MP ++ ++ NV+I A  
Sbjct: 365 SGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALA 424

Query: 76  NHGLVDDAWDVFRSM 32
            HG   +    FR+M
Sbjct: 425 MHGRAQETVTFFRTM 439



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 39/135 (28%), Positives = 66/135 (48%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           ++ E +  ++N ++ AY+      +A+ + R +L+ G   PN FT   VL AC     + 
Sbjct: 73  RIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRG-ILPNEFTLPFVLKACTTVRAVE 131

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
           H    H  +V+ G+        AL+  +   G+LRD+R+ F  M  R+ V+ N MI  + 
Sbjct: 132 HALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYA 191

Query: 76  NHGLVDDAWDVFRSM 32
             G V +A  +F  M
Sbjct: 192 QAGEVSEACALFGEM 206


>ref|XP_001776621.1| predicted protein [Physcomitrella patens]
           gi|162672066|gb|EDQ58609.1| predicted protein
           [Physcomitrella patens]
          Length = 703

 Score =  115 bits (288), Expect = 6e-24
 Identities = 59/126 (46%), Positives = 79/126 (62%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           W  MI AYA+ G   +A  +  +M +EG FKPN  T+  +L+ACA +G L   + +HRH 
Sbjct: 198 WTVMIGAYAQSGNGKEAYRLMLQMEQEG-FKPNAITYVSILNACASEGALKWVKRVHRHA 256

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAW 50
           +++G  LD   GTALV MY K G++ DAR VFDRM  R  V+ NVMI AF  HG   +A+
Sbjct: 257 LDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAY 316

Query: 49  DVFRSM 32
           D+F  M
Sbjct: 317 DLFLQM 322



 Score =  115 bits (287), Expect = 8e-24
 Identities = 62/135 (45%), Positives = 82/135 (60%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M   +   WN MI A+A+ GR ++A  +F +M  EG  KP+   F  +L+ACA  G L 
Sbjct: 290 RMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG-CKPDAIMFLSILNACASAGALE 348

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
             + IHRH ++SG  +D   GTALV MY K G++ DAR VFDRM  R+ V+ N MIS   
Sbjct: 349 WVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408

Query: 76  NHGLVDDAWDVFRSM 32
            HGL  DA +VFR M
Sbjct: 409 QHGLGQDALEVFRRM 423



 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 48/128 (37%), Positives = 69/128 (53%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           WN MIA Y +     DAM +FR M  EG  +PN  T+  +L ACA    L  G+ +H  I
Sbjct: 97  WNAMIAGYVEHKHAEDAMRLFREMCHEG-VQPNAGTYMIILKACASLSALKWGKEVHACI 155

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAW 50
              G   D   GTAL+ MYGKCG++ +AR++FD +     ++  VMI A+   G   +A+
Sbjct: 156 RHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAY 215

Query: 49  DVFRSMPE 26
            +   M +
Sbjct: 216 RLMLQMEQ 223



 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M   N   WN MI+  A+ G   DA+ +FRRM   G  KP+  TF  VLSAC+H G + 
Sbjct: 391 RMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHG-VKPDRVTFVAVLSACSHAGLVD 449

Query: 256 HGRMIHRHIVESGYGL--DECSGTALVDMYGKCGALRDARQVFDRM 125
            GR  +  + +  YG+  D      +VD+ G+ G L +A+   D M
Sbjct: 450 EGRSQYLAMTQV-YGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNM 494


>gb|EXC06699.1| hypothetical protein L484_021537 [Morus notabilis]
          Length = 616

 Score =  114 bits (286), Expect = 1e-23
 Identities = 60/142 (42%), Positives = 86/142 (60%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M + +   W  MI A ++QG+  +A  +F RML EG F PN FT  GVL AC+ +  L 
Sbjct: 244 QMLKRDVVCWTTMITACSQQGKGKEAFSLFSRMLNEG-FSPNEFTVCGVLKACSEEKELN 302

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR +H  IV+  Y  D   GT+LVDMY KCG + D+R VF++M  R+TVT   +I+ + 
Sbjct: 303 FGRQLHGAIVKKMYKNDVFIGTSLVDMYAKCGEILDSRNVFNKMRHRNTVTWTSIIAGYA 362

Query: 76  NHGLVDDAWDVFRSMPERTVVT 11
             GL  +A  +FR M +R ++T
Sbjct: 363 RKGLGHEALKLFRVMKKRNILT 384



 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 43/119 (36%), Positives = 65/119 (54%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           W  +I+  A  G   +A+   + M+ EG  +PN FT++  L ACA    + HGR+IH   
Sbjct: 455 WTALISGCAHLGHETEALEFLKDMMEEG-VEPNSFTYSSALKACARLEAILHGRLIHSSA 513

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDA 53
            ++    +   G+AL+ MY KCG + +A QVFD MP R+ V    MI  +  +GL  +A
Sbjct: 514 NKTSSMSNVFVGSALIYMYAKCGYVAEALQVFDSMPERNLVAWKSMIVGYARNGLCREA 572



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 40/135 (29%), Positives = 64/135 (47%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           KMS  N   W  +I  Y   G  ++A+ +F   +  G  +PN   F  VL+ C+ +    
Sbjct: 144 KMSLRNVVTWTAVINGYLSFGFDDEALSLFSDYVESG-VRPNGKMFVCVLNLCSKRKDFE 202

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR IH  +V+  +  +    +++V  Y KCG +  A + FD+M  R  V    MI+A  
Sbjct: 203 LGRQIHAGVVKGRWS-NMIVESSIVKFYAKCGDMLSAFRKFDQMLKRDVVCWTTMITACS 261

Query: 76  NHGLVDDAWDVFRSM 32
             G   +A+ +F  M
Sbjct: 262 QQGKGKEAFSLFSRM 276


>ref|XP_006413323.1| hypothetical protein EUTSA_v10024921mg [Eutrema salsugineum]
           gi|557114493|gb|ESQ54776.1| hypothetical protein
           EUTSA_v10024921mg [Eutrema salsugineum]
          Length = 523

 Score =  114 bits (286), Expect = 1e-23
 Identities = 55/126 (43%), Positives = 80/126 (63%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           WN +I+ YA+ G++ DAM ++ +M  EG  KP+ FTF  VL AC   G +  G  IHR +
Sbjct: 159 WNSLISGYAESGQYEDAMALYFQMAEEG-VKPDRFTFPRVLKACGGIGSIQIGEAIHRDL 217

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAW 50
           V+ GYG D     ALVDMY KCG +   R VFD +P +  V+ N M++++++HGL+ +A 
Sbjct: 218 VKQGYGYDVYVLNALVDMYAKCGDIVKGRNVFDMIPNKDYVSWNSMLTSYLHHGLLQEAM 277

Query: 49  DVFRSM 32
            +FR M
Sbjct: 278 HIFRLM 283



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 35/109 (32%), Positives = 55/109 (50%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           WN M+ +Y   G   +AM +FR M+++G  +P+    + VL+         HGR +H   
Sbjct: 260 WNSMLTSYLHHGLLQEAMHIFRLMVQDG-IEPDKVAISSVLARVL---SFKHGRQLHGWA 315

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISA 83
           +  G   +     AL+ +Y K G L  A  +FD+M  R  V+ N +ISA
Sbjct: 316 IRRGMECELSVVNALIVLYSKRGQLSQACFIFDQMLERDIVSWNAIISA 364


>dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  114 bits (286), Expect = 1e-23
 Identities = 59/140 (42%), Positives = 82/140 (58%)
 Frame = -1

Query: 421 NPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMI 242
           N   WN MI   A+ G  ++A  +FR M R+G    + FTF  +L  C+ +G L  GR++
Sbjct: 173 NVVSWNTMIGGCAQAGETSEACALFREMRRQGVLA-DVFTFVSLLLVCSKEGNLEVGRLV 231

Query: 241 HRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLV 62
           H H++ SG  +D   G ALVDMYGKCG L  A + FD MP ++ V+   M+ A   HG V
Sbjct: 232 HCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSV 291

Query: 61  DDAWDVFRSMPERTVVTWTS 2
           D A D F  MPER +++W +
Sbjct: 292 DAARDWFEQMPERNIISWNA 311



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 49/135 (36%), Positives = 72/135 (53%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M E N   WN MI+ Y + GR  + + ++ RM   G   P+  T AGVLS     G L 
Sbjct: 300 QMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLG-LTPDEVTLAGVLSVHGQNGDLA 358

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GRMIH +I +S          +L+DMY +CG +  +  +F  MP ++T++ NV+I A  
Sbjct: 359 SGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALA 418

Query: 76  NHGLVDDAWDVFRSM 32
            HG   +A   FR+M
Sbjct: 419 MHGRAQEAVMFFRAM 433



 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           +N +I AY+  G   +A+ + R +LR G   PN FT   VL AC+      H    H   
Sbjct: 75  YNSLIRAYSNSGCPQEALCLHRDVLRRG-ILPNEFTLPFVLKACSRARAAEHALATHGVA 133

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRM-PTRSTVTCNVMISAFMNHGLVDDA 53
           ++ GY      G AL+      G+LRD+R++F  M P R+ V+ N MI      G   +A
Sbjct: 134 IKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEA 193

Query: 52  WDVFRSMPERTVV 14
             +FR M  + V+
Sbjct: 194 CALFREMRRQGVL 206



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M  +N   WN +I A A  GR  +A++ FR M+ +  F P+  TF G+LSAC+H G L 
Sbjct: 401 EMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDA-FSPDEITFVGLLSACSHGGLLE 459

Query: 256 HGRMIH---RHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTR-STVTCNVMI 89
            G+      RHI      ++  +   +VD+ G+ G L  A  +   MP +   V    +I
Sbjct: 460 DGQYYFKAMRHIYNVKPEVEHYA--CMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALI 517

Query: 88  SAFMNHGLVD 59
            A   HG V+
Sbjct: 518 GACRIHGHVE 527


>ref|XP_002983643.1| hypothetical protein SELMODRAFT_119022 [Selaginella moellendorffii]
           gi|300148480|gb|EFJ15139.1| hypothetical protein
           SELMODRAFT_119022 [Selaginella moellendorffii]
          Length = 396

 Score =  114 bits (286), Expect = 1e-23
 Identities = 57/140 (40%), Positives = 89/140 (63%)
 Frame = -1

Query: 424 ENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRM 245
           +N   WN MIAAYA+ G  ++A+ ++  M    N KP+  TF  VL AC     L  GR+
Sbjct: 21  KNVVCWNVMIAAYAQNGHFSEALELYYDM----NLKPDRVTFLNVLHACT----LESGRL 72

Query: 244 IHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGL 65
           IH+ +V +G   D+  G ALV+M+GKCG+L DA++VFDR+  R  ++ N ++S ++  G 
Sbjct: 73  IHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGR 132

Query: 64  VDDAWDVFRSMPERTVVTWT 5
             +A+++F+ M  R+VV+WT
Sbjct: 133 RKEAFELFKRMGRRSVVSWT 152



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 44/135 (32%), Positives = 63/135 (46%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M   +   W  MI    + G    A+ ++R M+ EG  +P+       L AC     L 
Sbjct: 142 RMGRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEG-VRPDAVALVCALDACTSVENLA 200

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR IHR +  +    D    TA+V+MYGKCG   +A  VF  M T +  T N +I A+ 
Sbjct: 201 EGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTTVATWNSLIGAYA 260

Query: 76  NHGLVDDAWDVFRSM 32
            HG   DA  ++  M
Sbjct: 261 QHGHATDALKLYERM 275


>ref|XP_006849644.1| hypothetical protein AMTR_s00024p00225420 [Amborella trichopoda]
           gi|548853219|gb|ERN11225.1| hypothetical protein
           AMTR_s00024p00225420 [Amborella trichopoda]
          Length = 784

 Score =  114 bits (285), Expect = 1e-23
 Identities = 54/144 (37%), Positives = 91/144 (63%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           M E N   W+ MIA Y++ G  ++A+ ++  M+ EG  +PN  TF+ +LS  A    L  
Sbjct: 293 MPERNEVSWSAMIARYSQNGEADEALKLYGHMVSEG-LRPNLSTFSSILSVSASLEDLKL 351

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMN 74
           G+ IH ++++ G+  +   G+ L+DMY KCG  ++A+ VF+ +P ++TV+ N MI+   +
Sbjct: 352 GKKIHGYVLKLGFDSNVFIGSPLIDMYAKCGKTKEAKMVFEMIPEKNTVSWNSMIAGLSH 411

Query: 73  HGLVDDAWDVFRSMPERTVVTWTS 2
           +GLV++A  +F  MPER VV+W +
Sbjct: 412 NGLVEEALQLFEQMPERNVVSWNA 435



 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 49/140 (35%), Positives = 70/140 (50%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M E N   WN +I+ Y +       + ++  M   G   PN  TF+ VL ACA    L 
Sbjct: 424 QMPERNVVSWNAIISGYVQNELCEQGLELYSVMETSGEL-PNQSTFSSVLRACASIASLE 482

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR IH  IV+ G   D   GTAL DMY K G +  A+ VF RMP ++ ++   MI    
Sbjct: 483 RGRNIHGKIVKFGVQYDVFMGTALTDMYAKSGDIESAKLVFHRMPEKNEISFTAMIQGLA 542

Query: 76  NHGLVDDAWDVFRSMPERTV 17
           ++G  ++A  +F  M E  +
Sbjct: 543 DNGFGEEALILFEKMEESDI 562



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
 Frame = -1

Query: 298 AGVLSACAHKGGLGHGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPT 119
           A +L+ACA      HG++IH H+ + G+         L+ MY +C +  DA  +F+ M  
Sbjct: 40  ASLLNACATNASTKHGKVIHAHLTKLGFLSHRFLSLKLLIMYVRCNSFHDANSLFNEMGD 99

Query: 118 RST--VTCNVMISAFMNHGLVDDAWDVFRSMPERTVVTWTS 2
           RS+  +  N MISA+   GL D A  +F  MPER +V+WT+
Sbjct: 100 RSSDLIASNCMISAYSQMGLSDQAKRLFDKMPERNIVSWTA 140



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 35/133 (26%), Positives = 64/133 (48%)
 Frame = -1

Query: 400 MIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHIVES 221
           +I+ Y + G H  A+ +FR M R     PN  TF  ++  C        G+ +   IV  
Sbjct: 172 IISGYVQNGLHIAALKIFREMYRY-EVLPNDVTFICIIRGCVCLRWFREGKCVMGQIVRL 230

Query: 220 GYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAWDVF 41
           G+        +++ +  + G +  AR+VFD M  +  V+   ++  ++  G   +A  +F
Sbjct: 231 GFQSYLPVSNSIITLLVRMGDMELARRVFDGMAEKDVVSWTAILDLYVEKGEFAEARKLF 290

Query: 40  RSMPERTVVTWTS 2
            +MPER  V+W++
Sbjct: 291 DAMPERNEVSWSA 303


>ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
           gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein
           [Arabidopsis thaliana] gi|300825685|gb|ADK35876.1|
           chloroplast vanilla cream 1 [Arabidopsis thaliana]
           gi|332191210|gb|AEE29331.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  114 bits (285), Expect = 1e-23
 Identities = 56/135 (41%), Positives = 80/135 (59%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           KMSE N   WN ++  YAKQG  ++AM ++ RML  G  KP+ +TF  VL  C     L 
Sbjct: 154 KMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLA 213

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G+ +H H+V  GY LD     AL+ MY KCG ++ AR +FDRMP R  ++ N MIS + 
Sbjct: 214 RGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF 273

Query: 76  NHGLVDDAWDVFRSM 32
            +G+  +  ++F +M
Sbjct: 274 ENGMCHEGLELFFAM 288



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 43/140 (30%), Positives = 72/140 (51%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M   +   WN MI+ Y + G  ++ + +F  M R  +  P+  T   V+SAC   G   
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAM-RGLSVDPDLMTLTSVISACELLGDRR 314

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR IH +++ +G+ +D     +L  MY   G+ R+A ++F RM  +  V+   MIS + 
Sbjct: 315 LGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYE 374

Query: 76  NHGLVDDAWDVFRSMPERTV 17
            + L D A D +R M + +V
Sbjct: 375 YNFLPDKAIDTYRMMDQDSV 394



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 40/136 (29%), Positives = 67/136 (49%)
 Frame = -1

Query: 424 ENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRM 245
           +N   W  +IA      R  +A+I  R+M  +   +PN  T    L+ACA  G L  G+ 
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEALIFLRQM--KMTLQPNAITLTAALAACARIGALMCGKE 519

Query: 244 IHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGL 65
           IH H++ +G GLD+    AL+DMY +CG +  A   F+    +   + N++++ +   G 
Sbjct: 520 IHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQ 578

Query: 64  VDDAWDVFRSMPERTV 17
                ++F  M +  V
Sbjct: 579 GSMVVELFDRMVKSRV 594


>ref|XP_006306315.1| hypothetical protein CARUB_v10012185mg [Capsella rubella]
           gi|482575026|gb|EOA39213.1| hypothetical protein
           CARUB_v10012185mg [Capsella rubella]
          Length = 866

 Score =  114 bits (284), Expect = 2e-23
 Identities = 57/135 (42%), Positives = 80/135 (59%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           KMSE N   WN ++  YAKQG  ++AM ++ RML  G  KP+ +TF  VL  C     L 
Sbjct: 154 KMSERNLFSWNVLVGGYAKQGYLDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLA 213

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR +H H+V  GY LD     AL+ MY KCG ++ AR +FDRMP R  ++ N MIS + 
Sbjct: 214 RGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF 273

Query: 76  NHGLVDDAWDVFRSM 32
            +G+  +  ++F +M
Sbjct: 274 ENGMCYEGLELFFAM 288



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 42/140 (30%), Positives = 71/140 (50%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M   +   WN MI+ Y + G   + + +F  M R  +  P+  T   V+SAC   G   
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCYEGLELFFAM-RGLSVDPDLMTMTSVISACELLGAGR 314

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            GR IH +++ +G+ +D     +L  MY   G+ R+A ++F RM  +  V+   MIS + 
Sbjct: 315 LGRDIHAYVISTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYE 374

Query: 76  NHGLVDDAWDVFRSMPERTV 17
            + L + A D +R M + +V
Sbjct: 375 YNFLPEKAIDTYRKMDQDSV 394



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 41/136 (30%), Positives = 67/136 (49%)
 Frame = -1

Query: 424 ENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRM 245
           +N   W  +IA      R  +A+I FR+M      +PN  T    L+ACA  G L  G+ 
Sbjct: 462 KNVISWTSIIAGLRLNNRCFEALIFFRQMKMA--LQPNAITLTAALAACARIGALMCGKE 519

Query: 244 IHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGL 65
           IH H++ +G GLD+    AL+DMY +CG +  A   F+    +   + N++++ +   G 
Sbjct: 520 IHAHLLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQ-KKDVSSWNILLTGYSERGQ 578

Query: 64  VDDAWDVFRSMPERTV 17
                ++F  M +  V
Sbjct: 579 GSVVVELFDKMVKSRV 594



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 36/135 (26%), Positives = 64/135 (47%)
 Frame = -1

Query: 436 KMSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLG 257
           +M  ++   W  MI+ Y        A+  +R+M ++ + KP+  T A VLSACA  G L 
Sbjct: 357 RMERKDIVSWTTMISGYEYNFLPEKAIDTYRKMDQD-SVKPDEITVAAVLSACATLGDLD 415

Query: 256 HGRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFM 77
            G  IH+  +++           L++MY KC  +  A  +F  +P ++ ++   +I+   
Sbjct: 416 TGVEIHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLR 475

Query: 76  NHGLVDDAWDVFRSM 32
            +    +A   FR M
Sbjct: 476 LNNRCFEALIFFRQM 490


>ref|XP_006282784.1| hypothetical protein CARUB_v10006372mg, partial [Capsella rubella]
           gi|482551489|gb|EOA15682.1| hypothetical protein
           CARUB_v10006372mg, partial [Capsella rubella]
          Length = 533

 Score =  114 bits (284), Expect = 2e-23
 Identities = 56/132 (42%), Positives = 85/132 (64%)
 Frame = -1

Query: 427 EENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGR 248
           E +P  WN +I+ YA+ G++ DA+ ++ +M  +G  KP+ FTF  VL ACA  G +  G 
Sbjct: 163 ELSPFAWNSLISGYAELGQYEDALALYFQMAEDG-VKPDRFTFPRVLKACAGIGSIQIGD 221

Query: 247 MIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHG 68
            IHR +V++G+G D     ALVDMY KCG +   R VFD +P +  V+ N M++ +++HG
Sbjct: 222 AIHRDLVKAGFGYDVYVLNALVDMYAKCGDIVKGRNVFDMIPHKDYVSWNSMLTGYLHHG 281

Query: 67  LVDDAWDVFRSM 32
           L+ +A D+FR M
Sbjct: 282 LLLEALDIFRLM 293



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 35/109 (32%), Positives = 56/109 (51%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           WN M+  Y   G   +A+ +FR M+++G  +P+    + VL+         HGR +H  +
Sbjct: 270 WNSMLTGYLHHGLLLEALDIFRLMVQDG-IEPDKVAISSVLARVL---SFKHGRQLHGWV 325

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISA 83
           +  G   +     AL+  Y K G L  A  +FD+MP R TV+ N ++SA
Sbjct: 326 IRRGIEWELSVANALIVFYSKRGQLGQACFIFDQMPERDTVSWNAILSA 374


>gb|EMJ08834.1| hypothetical protein PRUPE_ppa021864mg [Prunus persica]
          Length = 748

 Score =  114 bits (284), Expect = 2e-23
 Identities = 56/131 (42%), Positives = 76/131 (58%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRHI 230
           WN MI++Y   G   +A+ +F +M+   NFKPN  T   VLSAC+H   LG G  IH HI
Sbjct: 474 WNTMISSYTHAGHSAEAIALFEKMIAV-NFKPNSATLVTVLSACSHLASLGEGEKIHSHI 532

Query: 229 VESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDDAW 50
            E    ++    TALVDMY KCG L  +R++FD M  R  ++ NVMIS +  HG  + A 
Sbjct: 533 KERRLEINLSLATALVDMYAKCGQLEKSRELFDSMEERDVISWNVMISGYATHGHAEPAL 592

Query: 49  DVFRSMPERTV 17
           ++FR M    +
Sbjct: 593 EIFRKMENSNI 603



 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 34/104 (32%), Positives = 53/104 (50%)
 Frame = -1

Query: 433 MSEENPTVWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGH 254
           M E +   WN MI+ YA  G    A+ +FR+M    N KPN  TF  +LSAC H G +  
Sbjct: 567 MEERDVISWNVMISGYATHGHAEPALEIFRKM-ENSNIKPNELTFLALLSACNHSGLVEE 625

Query: 253 GRMIHRHIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMP 122
           G+ +   + +     +      +VD+ G+ G L++A+ +   MP
Sbjct: 626 GKYLFGKMQDLSLKPNLKHYACMVDILGRSGNLQEAKDLVLSMP 669



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = -1

Query: 412 VWNFMIAAYAKQGRHNDAMIMFRRMLREGNFKPNHFTFAGVLSACAHKGGLGHGRMIHRH 233
           +WN +I  +   G ++ A+  F +M   G F P  FT   V+++CA    L HG  +H  
Sbjct: 97  LWNSIIKTHFSNGDYSKALDFFFQMRALG-FAPTQFTLPMVVASCAELMLLEHGNNVHGL 155

Query: 232 IVESG-YGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVD 59
            ++ G +  +   G++ V MY KCG + DA  +F+    R  V    +I  ++ +  ++
Sbjct: 156 ALKLGLFSGNSAVGSSFVYMYSKCGRMEDAYFMFEETTVRDVVCWTALIIGYVQNDEIE 214



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = -1

Query: 409 WNFMIAAYAKQGRHNDAMIMFRRMLREGNF--KPNHFTFAGVLSACAHKGGLGHGRMIHR 236
           W  +I  Y +       +     M R G    +PN  T    L AC   G L  G+ +H 
Sbjct: 200 WTALIIGYVQNDEIEKGLECLCEMHRVGGSDERPNFRTLEVGLQACGDLGTLVEGKCLHG 259

Query: 235 HIVESGYGLDECSGTALVDMYGKCGALRDARQVFDRMPTRSTVTCNVMISAFMNHGLVDD 56
            +V+SG G  E   + L+ MY +CG   ++   F  +  +  ++   +I  +   GL+D+
Sbjct: 260 FVVKSGIGCSEAVKSLLLSMYSRCGVPGESYLSFCEIKDKDLLSWTSVIGVYARSGLMDE 319

Query: 55  AWDVFRSM 32
              +F+ M
Sbjct: 320 CLSLFQGM 327