BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029258
         (668 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygr...   105   1e-20
ref|XP_001754449.1| predicted protein [Physcomitrella patens] gi...   105   2e-20
ref|XP_001785140.1| predicted protein [Physcomitrella patens] gi...   105   2e-20
gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygr...   104   2e-20
ref|XP_004246881.1| PREDICTED: pentatricopeptide repeat-containi...   104   3e-20
gb|ABR16520.1| unknown [Picea sitchensis]                             104   3e-20
gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygr...   103   4e-20
ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selag...   103   5e-20
ref|XP_006403701.1| hypothetical protein EUTSA_v10010938mg [Eutr...   103   6e-20
ref|XP_006292489.1| hypothetical protein CARUB_v10018718mg [Caps...   102   1e-19
ref|NP_190904.1| pentatricopeptide repeat-containing protein [Ar...   101   2e-19
gb|EXB74521.1| hypothetical protein L484_026217 [Morus notabilis]     101   2e-19
gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygr...   101   2e-19
gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygr...   100   3e-19
ref|NP_180987.2| pentatricopeptide repeat-containing protein [Ar...   100   5e-19
gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana] gi|20...   100   5e-19
ref|XP_001768535.1| predicted protein [Physcomitrella patens] gi...   100   7e-19
gb|EOY33969.1| Tetratricopeptide repeat (TPR)-like superfamily p...    99   9e-19
ref|XP_002876202.1| pentatricopeptide repeat-containing protein ...    99   1e-18
ref|XP_001775099.1| predicted protein [Physcomitrella patens] gi...    99   1e-18

>gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  105 bits (262), Expect = 1e-20
 Identities = 54/190 (28%), Positives = 110/190 (57%)
 Frame = +3

Query: 96   EAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVF 275
            EA++V  D+++  ++    TY S++  C    A+  GR +H+ +++  +   + +   + 
Sbjct: 530  EALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLV 589

Query: 276  DMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKH 455
            +MY  CGS+ DARQ+FD + +RD   Y A+I  Y  +   ++A++++ ++QEEGLK DK 
Sbjct: 590  NMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 649

Query: 456  VLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVF 635
              +++L ACA + + ++   A+ +   V++    SD  + + ++  Y +   F  A  VF
Sbjct: 650  TYINMLNACANSGSLEW---AKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVF 706

Query: 636  DKMLEQDELA 665
            DKM++++ ++
Sbjct: 707  DKMMKRNVIS 716



 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 52/196 (26%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
 Frame = +3

Query: 63  YKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVV 242
           YKD         A+ V+  L+++  R+    Y  +++ C + K +  GR VH+H+++H  
Sbjct: 113 YKDERTITGKDRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCT 172

Query: 243 NLPSKMLWMVFDMYVECGSLGDARQLFDEI--PKRDFYNYKAIIMAYLGNGKEEKAVEMY 416
            L    +  + +MY++CGS+ +ARQ+++++   +R  +++ A+++ Y+  G  E+A+++ 
Sbjct: 173 VLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLL 232

Query: 417 VKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIY 596
            +MQ+ GL   +   + +L +C    +P   +  + +  E ++ +L  D  VA+ ++ +Y
Sbjct: 233 REMQQHGLALGRATTMRLLSSC---KSPSALECGREIHVEAMKARLLFDVNVANCILNMY 289

Query: 597 GRRDKFDKAREVFDKM 644
            +     +AREVFDKM
Sbjct: 290 AKCGSIHEAREVFDKM 305



 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 54/191 (28%), Positives = 101/191 (52%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           +EA  +   +++  +     TY  L+  C +  A+  GR +H  ++K        +   +
Sbjct: 428 EEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNAL 487

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
             MY  CGS+ DAR LF+++ ++D  ++ A+I     +G   +A+ ++  MQ+ GLK ++
Sbjct: 488 ISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNR 547

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
               SIL AC   S+P   D  + + ++V+   L +DA VA+ ++ +Y        AR+V
Sbjct: 548 VTYTSILNAC---SSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQV 604

Query: 633 FDKMLEQDELA 665
           FD+M ++D +A
Sbjct: 605 FDRMTQRDIVA 615



 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 50/205 (24%), Positives = 107/205 (52%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +V GY   V+   ++EA+ +L ++++  + +   T   L+  C    A+  GR +H   +
Sbjct: 215 MVVGY---VQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM 271

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K  +     +   + +MY +CGS+ +AR++FD++  +   ++  II  Y   G  E A E
Sbjct: 272 KARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFE 331

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ KMQ+EG+  ++   +++L A +  +  K+    + +   ++    ESD  V   ++ 
Sbjct: 332 IFQKMQQEGVVPNRITYINVLNAFSGPAALKW---GKTVHSHILNAGHESDLAVGTALVK 388

Query: 591 IYGRRDKFDKAREVFDKMLEQDELA 665
           +Y +   +   R+VF+K++ +D +A
Sbjct: 389 MYAKCGSYKDCRQVFEKLVNRDLIA 413



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 53/202 (26%), Positives = 91/202 (45%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           ++ GY D    +    A  +   +++  V     TY +++       A+  G+ VH H+L
Sbjct: 316 IIGGYADCGHSEI---AFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHIL 372

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
                    +   +  MY +CGS  D RQ+F+++  RD   +  +I      G  E+A E
Sbjct: 373 NAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASE 432

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           +Y +MQ EG+  +K   V +L AC     P      + +   VV+     D  V + +I 
Sbjct: 433 IYHQMQREGMMPNKITYVILLNACV---NPTALHWGREIHSRVVKDGFMFDISVQNALIS 489

Query: 591 IYGRRDKFDKAREVFDKMLEQD 656
           +Y R      AR +F+KM+ +D
Sbjct: 490 MYARCGSIKDARLLFNKMVRKD 511



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 34/131 (25%), Positives = 73/131 (55%)
 Frame = +3

Query: 93   KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
            KEA+ +   L++  ++ +  TY +++  C ++ ++   + +H  +LK      + +   +
Sbjct: 630  KEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNAL 689

Query: 273  FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
               Y +CGS  DA  +FD++ KR+  ++ AII     +G+ +  ++++ +M+ EG+K D 
Sbjct: 690  VSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDI 749

Query: 453  HVLVSILKACA 485
               VS+L AC+
Sbjct: 750  VTFVSLLSACS 760


>ref|XP_001754449.1| predicted protein [Physcomitrella patens]
           gi|162694551|gb|EDQ80899.1| predicted protein
           [Physcomitrella patens]
          Length = 723

 Score =  105 bits (261), Expect = 2e-20
 Identities = 58/190 (30%), Positives = 104/190 (54%)
 Frame = +3

Query: 87  RLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLW 266
           RLKEA+ ++  +  +  R+  + +R L+Q C   +++ +GR VH  +LK  +     +  
Sbjct: 27  RLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLEN 86

Query: 267 MVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKS 446
            +  MY +CGSL DAR++FD I  R+  ++ A+I A++   K  +A + Y  M+  G K 
Sbjct: 87  TLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKP 146

Query: 447 DKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAR 626
           DK   VS+L A    + P+   + Q +  E+V   LE + +V   ++ +Y +     KAR
Sbjct: 147 DKVTFVSLLNAF---TNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 627 EVFDKMLEQD 656
            +FD++ E++
Sbjct: 204 VIFDRLPEKN 213



 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 55/208 (26%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           L+ GY    +  ++  A+ +L  +++  V     T+ S++Q C    A+  G+ VH++++
Sbjct: 220 LIAGY---AQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYII 276

Query: 231 KHVVNLPSKMLWMV---FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEK 401
           +       + LW+V     MY +CG L +AR+LF ++P RD   + A++  Y   G  ++
Sbjct: 277 QSGYG---RELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDE 333

Query: 402 AVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHF 581
           A+ ++ +MQ++G+K DK    S+L +C   S+P F    + + +++V      D  +   
Sbjct: 334 AINLFRRMQQQGIKPDKMTFTSVLTSC---SSPAFLQEGKRIHQQLVHAGYNLDVYLQSA 390

Query: 582 MIYIYGRRDKFDKAREVFDKMLEQDELA 665
           ++ +Y +    D A  VF++M E++ +A
Sbjct: 391 LVSMYAKCGSMDDASLVFNQMSERNVVA 418



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 39/145 (26%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +V GY      D   EAI++   ++++ ++ +  T+ S++  C     + EG+ +H+ ++
Sbjct: 321 MVTGYAQLGFHD---EAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV 377

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLG-NGKEEKAV 407
               NL   +   +  MY +CGS+ DA  +F+++ +R+   + AII      +G+  +A+
Sbjct: 378 HAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREAL 437

Query: 408 EMYVKMQEEGLKSDKHVLVSILKAC 482
           E + +M+++G+K DK    S+L AC
Sbjct: 438 EYFDQMKKQGIKPDKVTFTSVLSAC 462



 Score = 66.6 bits (161), Expect = 6e-09
 Identities = 39/187 (20%), Positives = 91/187 (48%)
 Frame = +3

Query: 96  EAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVF 275
           EA      ++    + +  T+ SL+    + + +  G+ VH  +++  + L  ++   + 
Sbjct: 131 EAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLV 190

Query: 276 DMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKH 455
            MY +CG +  AR +FD +P+++   +  +I  Y   G+ + A+E+   MQ+  +  +K 
Sbjct: 191 GMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKI 250

Query: 456 VLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVF 635
              SIL+ C   +TP   +  + +   +++     +  V + +I +Y +    ++AR++F
Sbjct: 251 TFASILQGC---TTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLF 307

Query: 636 DKMLEQD 656
             +  +D
Sbjct: 308 SDLPHRD 314


>ref|XP_001785140.1| predicted protein [Physcomitrella patens]
           gi|162663262|gb|EDQ50036.1| predicted protein
           [Physcomitrella patens]
          Length = 922

 Score =  105 bits (261), Expect = 2e-20
 Identities = 56/179 (31%), Positives = 98/179 (54%)
 Frame = +3

Query: 120 LEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGS 299
           L KR V+  L  Y   +Q C   K++ EG+ VH HM          +  M+  MY +CGS
Sbjct: 42  LGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGS 101

Query: 300 LGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKA 479
           + DA  +F  +  +D  ++ A+I  Y  +G+ ++AV+++ +MQ EGLK +++  +SIL A
Sbjct: 102 IEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSA 161

Query: 480 CARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
           C    TP   +  + +   + +   ESD  V+  +I +Y +    + AR+VF++M E++
Sbjct: 162 C---QTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERN 217



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 45/189 (23%), Positives = 107/189 (56%)
 Frame = +3

Query: 90  LKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWM 269
           ++EA  +  D++++  + +  TY SL+ +C D   +  G+ +H  +++        +   
Sbjct: 334 MEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATA 393

Query: 270 VFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSD 449
           +  MY +CGSL +AR++F+++P+++  ++ A I     +G E++A +++ +M+ + +  D
Sbjct: 394 LISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPD 453

Query: 450 KHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKARE 629
               +++L +C   ++P+  +  + +  ++ +  + S+  VA+ +I +YGR  K   ARE
Sbjct: 454 HVTFITLLNSC---TSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADARE 510

Query: 630 VFDKMLEQD 656
           VF ++  +D
Sbjct: 511 VFYRIRRRD 519



 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 50/188 (26%), Positives = 94/188 (50%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           KEA  V   + + +V  +  T+ +L+  C   +    GR++H  + +  +   + +   +
Sbjct: 436 KEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANAL 495

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
             MY  CG L DAR++F  I +RD  ++ A+I AY+ +G    A ++++K + EG K DK
Sbjct: 496 ISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDK 555

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
           +  +++L+A A        D  + +   V +  LE D ++   +I +Y +      A  V
Sbjct: 556 YTFINVLRAIANLED---LDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSV 612

Query: 633 FDKMLEQD 656
           F  + E+D
Sbjct: 613 FKNVQEKD 620



 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 52/205 (25%), Positives = 106/205 (51%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +++GY   V+    KEA  +   L +   +    ++ S++  C +   + +G  +H ++ 
Sbjct: 224 MISGY---VQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIK 280

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           +  +     +   +  MY  CGSL +ARQ+FD +   +  ++ A+I  Y G G  E+A  
Sbjct: 281 QAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGY-GEGFMEEAFR 339

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++  MQ++G + D+    S+L  CA  +     +  + L  ++VR   E+D  VA  +I 
Sbjct: 340 LFRDMQQKGFQPDRFTYASLLAICADRAD---LNRGKELHSQIVRTAWEADVTVATALIS 396

Query: 591 IYGRRDKFDKAREVFDKMLEQDELA 665
           +Y +    ++AR+VF++M E++ ++
Sbjct: 397 MYAKCGSLEEARKVFNQMPEKNAVS 421



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 48/198 (24%), Positives = 98/198 (49%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +++GY       R +EA+ +   +++  ++    ++ S++  C     +  G  +H H+ 
Sbjct: 123 MISGY---ALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHIT 179

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K        +   + +MY +CGSL  AR++F+E+ +R+  ++ A+I  Y+ +G  ++A  
Sbjct: 180 KAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFV 239

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ K+   G + +K    SIL AC   + P   +    L   + +  LE +  V + +I 
Sbjct: 240 LFQKLIRSGTQPNKVSFASILGAC---TNPNDLEQGLKLHAYIKQAGLEQEVLVGNALIS 296

Query: 591 IYGRRDKFDKAREVFDKM 644
           +Y R      AR+VFD +
Sbjct: 297 MYARCGSLANARQVFDNL 314



 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 37/169 (21%), Positives = 83/169 (49%)
 Frame = +3

Query: 153  TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
            T+ ++++   + + +  GR +H  + K  +    ++L  +  MY +CGSL DA  +F  +
Sbjct: 557  TFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNV 616

Query: 333  PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPD 512
             ++D   + A++ AY  +   + A++++ +M+ EG+  D     S+L ACAR    +   
Sbjct: 617  QEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEH-- 674

Query: 513  VAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQDE 659
              +    ++    +E+D +    M+   GR     +A E  +++  + +
Sbjct: 675  -GKKFHTQLKEAAMETDTRHYACMVAALGRASLLKEAEEFIEEISSESD 722


>gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  104 bits (260), Expect = 2e-20
 Identities = 58/197 (29%), Positives = 106/197 (53%)
 Frame = +3

Query: 66  KDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVN 245
           +DT     +K A+ +L    KR V+  L  Y   +Q C   K++ EG+ VH HM      
Sbjct: 76  RDTREGKSIKGAVQLLG---KRGVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFK 132

Query: 246 LPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKM 425
               +  M+  MY +CGS+ DA  +F  +  +D  ++ A+I  Y  +G++++A +++ +M
Sbjct: 133 PDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQM 192

Query: 426 QEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRR 605
           Q EGLK +++  +SIL AC    +P   +  + +   + +   ESD  V+  +I +Y + 
Sbjct: 193 QREGLKPNQNTFISILSAC---QSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKC 249

Query: 606 DKFDKAREVFDKMLEQD 656
              + AR+VF++M E++
Sbjct: 250 GSLELARKVFNEMRERN 266



 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 50/193 (25%), Positives = 94/193 (48%)
 Frame = +3

Query: 78   RDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSK 257
            R D  KEA      + + +V  +  T+ +L+  C   + +  GR++H  + +  +   + 
Sbjct: 480  RHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNH 539

Query: 258  MLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEG 437
            +   +  MY  CG+L DAR++F  I +RD  ++ A+I A + +G    A +++ K + EG
Sbjct: 540  VANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEG 599

Query: 438  LKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFD 617
             K DK+  +++L+A A        D  +M+   V +     D +V   +I +Y +     
Sbjct: 600  GKGDKYTFINVLRAVANLED---LDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLR 656

Query: 618  KAREVFDKMLEQD 656
             A  VF  + E+D
Sbjct: 657  DAENVFSTVQEKD 669



 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 50/198 (25%), Positives = 98/198 (49%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +++GY    RD   +EA  +   +++  ++    T+ S++  C    A+  G  +H  + 
Sbjct: 172 MISGYALHGRD---QEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIA 228

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K        +   + +MY +CGSL  AR++F+E+ +R+  ++ A+I  Y+ +G   +A+ 
Sbjct: 229 KAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALA 288

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ K+   G++ +K    SIL AC   + P        L   + +  LE +  V + +I 
Sbjct: 289 LFRKLIRSGIQPNKVSFASILGAC---TNPNDLGEGLKLHAYIKQAGLEQEVLVGNALIS 345

Query: 591 IYGRRDKFDKAREVFDKM 644
           +Y R      AR+VFD +
Sbjct: 346 MYSRCGSLANARQVFDNL 363



 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 43/168 (25%), Positives = 91/168 (54%)
 Frame = +3

Query: 153  TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
            T+ ++++   + + +  GR +H  + K       ++L  +  MY +CGSL DA  +F  +
Sbjct: 606  TFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTV 665

Query: 333  PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPD 512
             ++D   + A++ AY  + + + A++++ +MQ EG+  D     + L ACAR +  +   
Sbjct: 666  QEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEH-- 723

Query: 513  VAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
              + +  ++    +E+D +V++ +I +Y R      A++VF+KML +D
Sbjct: 724  -GKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRD 770



 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 50/205 (24%), Positives = 106/205 (51%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +++GY   V+    +EA+++   L +  ++    ++ S++  C +   + EG  +H ++ 
Sbjct: 273 MISGY---VQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIK 329

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           +  +     +   +  MY  CGSL +ARQ+FD +   +   + A+I  Y G G  E+A  
Sbjct: 330 QAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGY-GEGLMEEAFR 388

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++  M+++G + DK    S+L  CA  +     D  + L  ++     ++D  VA  +I 
Sbjct: 389 LFRAMEQKGFQPDKFTYASLLAICADRAD---LDRGKELHSQIASTGWQTDLTVATALIS 445

Query: 591 IYGRRDKFDKAREVFDKMLEQDELA 665
           +Y +    ++AR+VF++M E++ ++
Sbjct: 446 MYAKCGSPEEARKVFNQMPERNVIS 470



 Score = 76.6 bits (187), Expect = 6e-12
 Identities = 42/189 (22%), Positives = 99/189 (52%)
 Frame = +3

Query: 90  LKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWM 269
           ++EA  +   +E++  + +  TY SL+ +C D   +  G+ +H  +          +   
Sbjct: 383 MEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATA 442

Query: 270 VFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSD 449
           +  MY +CGS  +AR++F+++P+R+  ++ A I     +   ++A + + +M+ + +  D
Sbjct: 443 LISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPD 502

Query: 450 KHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKARE 629
               +++L +C   ++P+  +  + +  ++ +  + S+  VA+ +I +YGR      ARE
Sbjct: 503 HITFITLLNSC---TSPEDLERGRYIHGKINQWGMLSNNHVANALISMYGRCGNLADARE 559

Query: 630 VFDKMLEQD 656
           VF ++  +D
Sbjct: 560 VFYRIRRRD 568



 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 43/187 (22%), Positives = 85/187 (45%)
 Frame = +3

Query: 84   DRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKML 263
            DR ++A+ +   ++   V  +  TY + +  C    A+  G+ +H  + +  +   +++ 
Sbjct: 684  DRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVS 743

Query: 264  WMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLK 443
              + +MY  CG L  A+Q+F+++  RD  ++ A+I  Y  NG+   A+E Y  M    + 
Sbjct: 744  NSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIV 803

Query: 444  SDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKA 623
             +K    SIL + A+    +       LE       +E   Q   +M+   GR     +A
Sbjct: 804  PNKATFTSILSSYAQLGEEE--QAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGLLKEA 861

Query: 624  REVFDKM 644
             E  +++
Sbjct: 862  EEFIEEI 868


>ref|XP_004246881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Solanum lycopersicum]
          Length = 519

 Score =  104 bits (259), Expect = 3e-20
 Identities = 63/202 (31%), Positives = 109/202 (53%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +V GY    +        S+  +  +  VR +  T   +I++C DT  +T GR +H  + 
Sbjct: 17  MVGGY---AKAGDFMNCFSIFKEYLRSGVRPDTYTLPFVIRVCRDTMDLTMGRLIHNVVY 73

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K  + L + ++  + DMY +C  +GDA+QLFD +PKRD   +  +I A    G   +A+ 
Sbjct: 74  KCGLLLDNFVVAALVDMYSKCKVIGDAKQLFDGMPKRDVVTWTVMIGACTECGDATEALV 133

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ +M+EEG+  DK VLV+++ ACA+         A+++ E +V+ K   D  +   M+ 
Sbjct: 134 LFDQMREEGVVPDKVVLVNVVNACAKIGA---MHKAKLVHEYIVKNKFSFDVILGTAMVD 190

Query: 591 IYGRRDKFDKAREVFDKMLEQD 656
           +Y +    D AREVFD + E++
Sbjct: 191 MYAKCGSIDVAREVFDGLREKN 212



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 46/189 (24%), Positives = 99/189 (52%), Gaps = 1/189 (0%)
 Frame = +3

Query: 96  EAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVF 275
           EA+ +   + +  V  +     +++  C    A+ + + VH++++K+  +    +   + 
Sbjct: 130 EALVLFDQMREEGVVPDKVVLVNVVNACAKIGAMHKAKLVHEYIVKNKFSFDVILGTAMV 189

Query: 276 DMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKH 455
           DMY +CGS+  AR++FD + +++   + A+I AY  +G+  KAV+M+  M   G+  +K 
Sbjct: 190 DMYAKCGSIDVAREVFDGLREKNVITWSAMIAAYGYHGQGNKAVDMFPMMLRTGILPNKI 249

Query: 456 VLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVF 635
             VS+L AC+ +   +  +  Q+         ++ D +    M+ + GR  K D++ ++ 
Sbjct: 250 TFVSLLYACSHSGLVE--EGKQLFNSMQKEYGVKPDIKHFTCMVDLLGRAGKIDESLKLI 307

Query: 636 DKM-LEQDE 659
           + M +E+DE
Sbjct: 308 EDMAVEKDE 316


>gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  104 bits (259), Expect = 3e-20
 Identities = 63/212 (29%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
 Frame = +3

Query: 36  KFKPGLVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFV 215
           K   GLV   K   +  RL+EA+ +L D+ +  +     TY SL+Q C + K++ + + +
Sbjct: 30  KGNDGLV---KSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLL 86

Query: 216 HKHMLK-----HVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYL 380
           H HM++       ++L +K++     +YV+ GSL +AR++FDE+P ++  ++ A+I AY 
Sbjct: 87  HAHMIQTQFECQDISLGNKLV----SIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYA 142

Query: 381 GNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLES 560
            +   ++A+  + +MQ+ G++ +     SIL AC         +V     +E+V+   ES
Sbjct: 143 RHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTD------LEVLGEFHDEIVKGGFES 196

Query: 561 DAQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
           +  V + ++ +Y +R   + ARE+FDKM ++D
Sbjct: 197 NVFVGNGLVDMYAKRGCIEFARELFDKMPQRD 228



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 47/205 (22%), Positives = 104/205 (50%), Gaps = 7/205 (3%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           ++ GY    ++ + + A+ +   ++  +++   ET+  ++  C     + +G   H+ ++
Sbjct: 359 MIAGYS---QNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVI 415

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           +        +   +  MY +CGS+ DAR++FD + ++D  +  A+I+ Y  NG  ++++E
Sbjct: 416 RSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLE 475

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEE-----EVVRQKLESDAQVA 575
           ++ +MQ  GLK D+   V +L AC           A +++E     +++ +       + 
Sbjct: 476 LFEQMQFTGLKPDRVTFVGVLSACCH---------AGLVDEGRQYFDIMTRFYHITPAME 526

Query: 576 HF--MIYIYGRRDKFDKAREVFDKM 644
           H+  MI + GR   FD+A ++ +KM
Sbjct: 527 HYGCMIDLLGRAGCFDEANDLINKM 551



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 36/129 (27%), Positives = 70/129 (54%)
 Frame = +3

Query: 270 VFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSD 449
           V   + + G + +A +LF  +P+ +  ++ A+I  Y  NG+ E A++++ +MQ   +K +
Sbjct: 328 VISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPN 387

Query: 450 KHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKARE 629
                 +L ACA  +  +  + A    E V+R   +SD  V + ++ +Y +    + AR+
Sbjct: 388 TETFAIVLPACAALAVLEQGNEA---HEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARK 444

Query: 630 VFDKMLEQD 656
           VFD+M +QD
Sbjct: 445 VFDRMRQQD 453


>gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  103 bits (258), Expect = 4e-20
 Identities = 58/193 (30%), Positives = 105/193 (54%)
 Frame = +3

Query: 78  RDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSK 257
           +  RLKEA+ +L  +  +  R+  + +R L+Q C   +++ +GR VH  +LK  +     
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 258 MLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEG 437
           +   +  MY +CGSL DAR++FD I  R+  ++ A+I A++   +  +A + Y  M+  G
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 438 LKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFD 617
            K DK   VS+L A    + P+   V Q +  E+ +  LE + +V   ++ +Y +     
Sbjct: 193 CKPDKVTFVSLLNAF---TNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDIS 249

Query: 618 KAREVFDKMLEQD 656
           KA+ +FDK+ E++
Sbjct: 250 KAQVIFDKLPEKN 262



 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 54/205 (26%), Positives = 110/205 (53%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           L+ GY    +  ++  A+ +L  +++  V     TY S++Q C    A+  G+ VH++++
Sbjct: 269 LIAGY---AQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYII 325

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           +        ++  +  MY +CG L +AR+LF ++P RD   + A++  Y   G  ++A++
Sbjct: 326 QSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAID 385

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ +MQ++G+K DK    S L +C   S+P F    + + +++V      D  +   ++ 
Sbjct: 386 LFRRMQQQGIKPDKMTFTSALTSC---SSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVS 442

Query: 591 IYGRRDKFDKAREVFDKMLEQDELA 665
           +Y +    D AR VF++M E++ +A
Sbjct: 443 MYAKCGSMDDARLVFNQMSERNVVA 467



 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 38/144 (26%), Positives = 79/144 (54%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +V GY      D   EAI +   ++++ ++ +  T+ S +  C     + EG+ +H+ ++
Sbjct: 370 MVTGYAQLGFHD---EAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV 426

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
               +L   +   +  MY +CGS+ DAR +F+++ +R+   + A+I     +G+  +A+E
Sbjct: 427 HAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALE 486

Query: 411 MYVKMQEEGLKSDKHVLVSILKAC 482
            + +M+++G+K DK    S+L AC
Sbjct: 487 YFEQMKKQGIKPDKVTFTSVLSAC 510



 Score = 66.2 bits (160), Expect = 8e-09
 Identities = 38/168 (22%), Positives = 85/168 (50%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
           T+ SL+    + + +  G+ VH  + K  + L  ++   +  MY +CG +  A+ +FD++
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKL 258

Query: 333 PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPD 512
           P+++   +  +I  Y   G+ + A+E+  KMQ+  +  +K    SIL+ C   +TP   +
Sbjct: 259 PEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGC---TTPLALE 315

Query: 513 VAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
             + +   +++     +  V + +I +Y +     +AR++F  +  +D
Sbjct: 316 HGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRD 363


>ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
            gi|300165631|gb|EFJ32238.1| hypothetical protein
            SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  103 bits (257), Expect = 5e-20
 Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
 Frame = +3

Query: 99   AISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFD 278
            AIS+   ++   +R +  T+ SL+  C D   + +GR +H  + +  +     M+  +  
Sbjct: 602  AISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDIVMVTGLIT 661

Query: 279  MYVECGSLGDARQLFDEI------PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGL 440
            MY  CGSL +AR++FD I        RD + + ++I AY  +G+  KA+E+Y +M    +
Sbjct: 662  MYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYEQMHSRQV 721

Query: 441  KSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDK 620
            ++D+   +S+L ACA  S  +     Q +   V+R+ L +D  VA+ ++++YG+   FD+
Sbjct: 722  EADRVTFISVLNACAHLSDLR---QGQAIHARVMRRGLATDVAVANSIVFMYGKCGSFDE 778

Query: 621  AREVFDKMLEQD 656
            A  VF+K   +D
Sbjct: 779  ASIVFEKTKHKD 790



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 49/183 (26%), Positives = 92/183 (50%)
 Frame = +3

Query: 96   EAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVF 275
            EA+ +  +++   V  +  T+ +++  C +   +  GR +H  ++        ++   +F
Sbjct: 500  EALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALF 559

Query: 276  DMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKH 455
            +MY +CGSLG+AR +FD +  RD  ++  +I AY+     E A+ +   MQ EG++ DK 
Sbjct: 560  NMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKA 619

Query: 456  VLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVF 635
               S+L AC   S P      + +   +   +LE+D  +   +I +Y      + ARE+F
Sbjct: 620  TFTSLLNAC---SDPNRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIF 676

Query: 636  DKM 644
            D +
Sbjct: 677  DNI 679



 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 49/198 (24%), Positives = 98/198 (49%), Gaps = 2/198 (1%)
 Frame = +3

Query: 78  RDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVV--NLP 251
           +D +   +I +  ++          T+ S++  C     + +GR +H  +++  +  +L 
Sbjct: 190 QDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLD 249

Query: 252 SKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQE 431
             +L +  +MYV+CG L  A Q F  + +RD  ++  +I AY  +GK   +++++ +M  
Sbjct: 250 IGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLL 309

Query: 432 EGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDK 611
           EG   +    VSIL  C     P   +  + +   VV   LES   VA+ ++ +Y R   
Sbjct: 310 EGTAPNSVTFVSILSGC---EAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRS 366

Query: 612 FDKAREVFDKMLEQDELA 665
           ++ +R +FD+M  +D ++
Sbjct: 367 WEDSRSLFDRMSVRDSVS 384



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 45/192 (23%), Positives = 94/192 (48%)
 Frame = +3

Query: 81  DDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKM 260
           D   ++A+ +   +    V  +      +++ C     +  G+ VH H+++  +      
Sbjct: 396 DSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDLVG 455

Query: 261 LWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGL 440
           + +V +MY +CG++G+AR++FD I  R    + ++I AY      E A+ ++ +MQ EG+
Sbjct: 456 ISLV-NMYAKCGTVGEARKVFDRINNRSRILWNSMITAYQEKDPHE-ALHLFREMQPEGV 513

Query: 441 KSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDK 620
             D+   +++L AC   +     +  + +   +V     +D +VA  +  +Y +     +
Sbjct: 514 SPDRITFMTVLNACVNAAD---LENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGE 570

Query: 621 AREVFDKMLEQD 656
           AR VFD M+ +D
Sbjct: 571 ARGVFDSMVFRD 582



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 1/180 (0%)
 Frame = +3

Query: 120 LEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGS 299
           +++R +  +    ++L+  C    A+ EG+ +   +    + L   +  +  +MYV+CG 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 300 LGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKA 479
           L  A Q F  + +RD  ++  +I AY  +GK   +++++ +M  EG   +    VSIL  
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 480 CARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGR-RDKFDKAREVFDKMLEQD 656
           C     P   +  + +   VV   LES   VA+ ++ +Y R R   D   + F +M  +D
Sbjct: 121 C---EAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRD 177



 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 3/171 (1%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDAR-QLFDE 329
           T+ S++  C     + +GR +H  +++  +     +   +  MY  C S  D+R Q F  
Sbjct: 113 TFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFAR 172

Query: 330 IPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFP 509
           + +RD  ++  +I AY  +GK   +++++ +M  EG   +    VSIL  C     P   
Sbjct: 173 MKRRDVVSWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGC---EAPSLL 229

Query: 510 DVAQMLEEEVVRQKLES--DAQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
           +  + +   VV   LES  D  V +  I +Y +    D A + F +M  +D
Sbjct: 230 EQGRQIHALVVESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRD 280


>ref|XP_006403701.1| hypothetical protein EUTSA_v10010938mg [Eutrema salsugineum]
           gi|557104820|gb|ESQ45154.1| hypothetical protein
           EUTSA_v10010938mg [Eutrema salsugineum]
          Length = 768

 Score =  103 bits (256), Expect = 6e-20
 Identities = 64/206 (31%), Positives = 116/206 (56%), Gaps = 4/206 (1%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRL-KEAISVLTDLEKRN-VRIELETYRSLIQLCCDTKAITEGRFVHKH 224
           L+N + +T+   +  +EA+       K +  +I L+TY SLI  C  ++++ +GR +H H
Sbjct: 33  LMNDHINTLCKQKFYREALEAFHFSHKNSSFKISLKTYVSLICACSSSRSLAQGRKIHDH 92

Query: 225 MLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKA 404
           +LK      + +   +  MY +CGSL DARQ+FD +P+R+  +Y ++I  Y  NG+E +A
Sbjct: 93  ILKSNCKHDTILNNHILSMYGKCGSLRDARQVFDLMPQRNLVSYTSVITGYSQNGQEAEA 152

Query: 405 VEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDV--AQMLEEEVVRQKLESDAQVAH 578
           +++Y+KM +E L  D++   SI+KACA      + DV   + L  +V++ +  S     +
Sbjct: 153 IKLYLKMLQEDLVPDQYSFGSIIKACA-----SYGDVGLGKQLHAQVIKLEPTSHLVAQN 207

Query: 579 FMIYIYGRRDKFDKAREVFDKMLEQD 656
            +I +Y   ++   A +VF  +  +D
Sbjct: 208 ALISMYVSFNQISDASKVFSGIPMKD 233



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 32/111 (28%), Positives = 63/111 (56%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
           T  SL++ C +  ++  G  VH + LK  + L   +   + DMY +CGS+  AR++FD +
Sbjct: 475 TTGSLLRACVEISSLKLGSQVHCYNLKTGLVLEQFITNGLIDMYAKCGSMEQARRVFDSM 534

Query: 333 PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACA 485
             RD  ++  +I+ Y  +G  ++A+ ++ +M+  G++ +    V +L AC+
Sbjct: 535 DNRDVVSWSTLIVGYAQSGFGDEALTLFKEMKSSGIEPNHVTFVGVLTACS 585


>ref|XP_006292489.1| hypothetical protein CARUB_v10018718mg [Capsella rubella]
           gi|482561196|gb|EOA25387.1| hypothetical protein
           CARUB_v10018718mg [Capsella rubella]
          Length = 768

 Score =  102 bits (254), Expect = 1e-19
 Identities = 57/182 (31%), Positives = 101/182 (55%), Gaps = 1/182 (0%)
 Frame = +3

Query: 93  KEAISVLTDLEKRN-VRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWM 269
           +EA+      +K +  +I L TY SLI  C  ++++ +GR +H H+LK      + +   
Sbjct: 48  REALDAFDSAQKNSSFKIRLRTYISLICACTSSRSLGQGRKIHDHILKSNCKYDTILNNH 107

Query: 270 VFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSD 449
           +  MY +CGSL DAR++FD +P+R+  +Y ++I  Y  NG+  +A+++Y+KM +E L  D
Sbjct: 108 ILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIKLYLKMLQEDLVPD 167

Query: 450 KHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKARE 629
           +    SI+KACA         + + L  +V++ +  S     + +I +Y R  +   A +
Sbjct: 168 QFAFGSIIKACASTGD---VGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFSQMSDASK 224

Query: 630 VF 635
           VF
Sbjct: 225 VF 226



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 30/111 (27%), Positives = 62/111 (55%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
           T  +L++ C +  ++  G  +H + LK  + L   ++  + DMY +CGSL  AR++FD +
Sbjct: 475 TMGNLLRACVEISSLKLGSQIHCYSLKTGLVLEQFIINGLIDMYAKCGSLWQARKIFDSM 534

Query: 333 PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACA 485
             RD  ++  +I  Y  +G  E+ + ++ +M+  G++ +    + +L AC+
Sbjct: 535 HNRDVVSWSTLIGGYAQSGLGEETLILFREMKFAGIEPNHVTFIGVLTACS 585


>ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
           gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis
           thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  101 bits (252), Expect = 2e-19
 Identities = 57/182 (31%), Positives = 101/182 (55%), Gaps = 1/182 (0%)
 Frame = +3

Query: 93  KEAISVLTDLEKRN-VRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWM 269
           +EA+      +K +  +I L TY SLI  C  ++++ +GR +H H+L       + +   
Sbjct: 48  REALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNH 107

Query: 270 VFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSD 449
           +  MY +CGSL DAR++FD +P+R+  +Y ++I  Y  NG+  +A+ +Y+KM +E L  D
Sbjct: 108 ILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPD 167

Query: 450 KHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKARE 629
           +    SI+KACA +S      + + L  +V++ +  S     + +I +Y R ++   A  
Sbjct: 168 QFAFGSIIKACASSSD---VGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASR 224

Query: 630 VF 635
           VF
Sbjct: 225 VF 226



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 33/111 (29%), Positives = 63/111 (56%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
           T  +L++ C +  ++  G  VH + LK  +     +   + DMY +CGSLG AR++FD +
Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534

Query: 333 PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACA 485
             RD  ++  +I+ Y  +G  E+A+ ++ +M+  G++ +    V +L AC+
Sbjct: 535 DNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585


>gb|EXB74521.1| hypothetical protein L484_026217 [Morus notabilis]
          Length = 651

 Score =  101 bits (251), Expect = 2e-19
 Identities = 59/167 (35%), Positives = 90/167 (53%)
 Frame = +3

Query: 156 YRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIP 335
           Y SLIQ C   KAI  G+ +H H+ +  +   + +   + +MY  CGSL +A  LFD IP
Sbjct: 80  YASLIQSCITRKAIKPGKQLHSHLCQMGLGFNTFLATKLVNMYCVCGSLWNAHHLFDRIP 139

Query: 336 KRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDV 515
           KR+ + +  +I  Y  NG  E A+ +Y +M + GL  D++    +LKAC+  S     +V
Sbjct: 140 KRNLFLWNVLIRGYAWNGPYEVAIALYNQMFDCGLVPDRYTFPFVLKACSALSA---IEV 196

Query: 516 AQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
            + + E VV    E+D  V   +I +Y +      AR VFDK+ E+D
Sbjct: 197 GRKIHERVVYTMCETDVYVGAALIDMYAKCCCPQSARRVFDKIEERD 243



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 1/184 (0%)
 Frame = +3

Query: 96  EAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVF 275
           E++++ +++    +R    T  ++I    D  A+  G+ +H   L++      K+   + 
Sbjct: 262 ESLALCSEMVLAGLRPTEATLVTVISASADIVALPAGKELHGFSLRNGFESNDKVKTALV 321

Query: 276 DMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKH 455
           DMY + GS+  AR LF+ + ++   ++ A+I  Y  +G   +A++++ KM+  G  +D  
Sbjct: 322 DMYAKSGSVKVARTLFERLGEKRVVSWNAMITGYAMHGYAAEALDLFEKMKGGGAVTDHI 381

Query: 456 VLVSILKACARNSTPKFPDVAQMLEEEVVRQ-KLESDAQVAHFMIYIYGRRDKFDKAREV 632
             V +L AC+R       D   M  + +VR+  +E   Q    M+ + G   + +KA  +
Sbjct: 382 TFVGVLGACSRGG---LLDKGLMFFDFMVREYHIEPTVQHYTCMVDLLGHCGQLNKAYNL 438

Query: 633 FDKM 644
             +M
Sbjct: 439 IKEM 442



 Score = 60.5 bits (145), Expect = 5e-07
 Identities = 40/167 (23%), Positives = 84/167 (50%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
           T+  +++ C    AI  GR +H+ ++  +      +   + DMY +C     AR++FD+I
Sbjct: 180 TFPFVLKACSALSAIEVGRKIHERVVYTMCETDVYVGAALIDMYAKCCCPQSARRVFDKI 239

Query: 333 PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPD 512
            +RD   + +++ AY  NG  ++++ +  +M   GL+  +  LV+++ A A       P 
Sbjct: 240 EERDAVLWNSMLAAYTQNGHPDESLALCSEMVLAGLRPTEATLVTVISASA--DIVALP- 296

Query: 513 VAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQ 653
             + L    +R   ES+ +V   ++ +Y +      AR +F+++ E+
Sbjct: 297 AGKELHGFSLRNGFESNDKVKTALVDMYAKSGSVKVARTLFERLGEK 343


>gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  101 bits (251), Expect = 2e-19
 Identities = 57/191 (29%), Positives = 106/191 (55%), Gaps = 1/191 (0%)
 Frame = +3

Query: 87  RLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLW 266
           +L EA+ VL  ++  +++I  +TY SL+QLC   K + +G  +H H +K     P   +W
Sbjct: 84  QLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNH-IKFSKIQPDIFMW 142

Query: 267 -MVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLK 443
            M+  MY +CG+   A+Q+FDE+P +D Y++  ++  Y+ + + E+A  ++ +M ++G+K
Sbjct: 143 NMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVK 202

Query: 444 SDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKA 623
            DK+  V +L ACA     K  D    L   ++    ++D  V   +I ++ +    D A
Sbjct: 203 PDKYTFVYMLNACA---DAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDA 259

Query: 624 REVFDKMLEQD 656
            +VF+ +  +D
Sbjct: 260 LKVFNNLPRRD 270



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 48/190 (25%), Positives = 95/190 (50%)
 Frame = +3

Query: 87  RLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLW 266
           R++EA      + +  +     T+ S++  C    A+ +GR +H  ++K       ++  
Sbjct: 387 RMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRT 446

Query: 267 MVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKS 446
            +  MY +CGSL DAR +F+ I K++   + A+I AY+ + K + AV  +  + +EG+K 
Sbjct: 447 ALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKP 506

Query: 447 DKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAR 626
           D     SIL  C    +P   ++ + ++  ++R   ESD  + + ++ ++        A 
Sbjct: 507 DSSTFTSILNVC---KSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAM 563

Query: 627 EVFDKMLEQD 656
            +F+ M E+D
Sbjct: 564 NLFNDMPERD 573



 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 46/177 (25%), Positives = 94/177 (53%), Gaps = 2/177 (1%)
 Frame = +3

Query: 120  LEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGS 299
            +++  V+ +  T+  L+  C   +A+TEGR +H  + +  ++    +   +  MY +CGS
Sbjct: 600  MQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGS 659

Query: 300  LGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKA 479
            + DA  +F  +PK++ Y++ ++I  Y  +G+ ++A+E++ +MQ+EG+K D    V  L A
Sbjct: 660  IDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSA 719

Query: 480  CARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHF--MIYIYGRRDKFDKAREVFDKM 644
            CA         + + L      +    + ++ H+  M+ ++GR     +A E  +KM
Sbjct: 720  CAHAGL-----IKEGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKM 771



 Score = 83.6 bits (205), Expect = 5e-14
 Identities = 48/196 (24%), Positives = 107/196 (54%)
 Frame = +3

Query: 78  RDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSK 257
           R  + K+A ++   +E+  V+ +   + SL++ C   +A+ +G+ VH  M +  ++    
Sbjct: 283 RHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIY 342

Query: 258 MLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEG 437
           +   +  MY +CGS+ DA ++F+ +  R+  ++ A+I  +  +G+ E+A   + KM E G
Sbjct: 343 VGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402

Query: 438 LKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFD 617
           ++ ++   +SIL AC+R S  K     + + + +++    +D +V   ++ +Y +     
Sbjct: 403 IEPNRVTFMSILGACSRPSALK---QGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLM 459

Query: 618 KAREVFDKMLEQDELA 665
            AR VF+++ +Q+ +A
Sbjct: 460 DARNVFERISKQNVVA 475



 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 46/190 (24%), Positives = 92/190 (48%)
 Frame = +3

Query: 75   VRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPS 254
            V+ ++   A++    L K  ++ +  T+ S++ +C    A+  G++V   +++       
Sbjct: 484  VQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDL 543

Query: 255  KMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEE 434
             +   +  M+V CG L  A  LF+++P+RD  ++  II  ++ +G+ + A + +  MQE 
Sbjct: 544  HIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQES 603

Query: 435  GLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKF 614
            G+K D+     +L ACA   +P+     + L   +    L+ D  V   +I +Y +    
Sbjct: 604  GVKPDQITFTGLLNACA---SPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSI 660

Query: 615  DKAREVFDKM 644
            D A  VF  +
Sbjct: 661  DDAHLVFHNL 670



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 45/196 (22%), Positives = 101/196 (51%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           L+ GY   V+  R +EA  +   + +  V+ +  T+  ++  C D K + +G  +   +L
Sbjct: 176 LLGGY---VQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLIL 232

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
               +    +   + +M+++CG + DA ++F+ +P+RD   + ++I     + + ++A  
Sbjct: 233 NAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACN 292

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++  M+EEG++ DK   VS+LKAC   + P+  +  + +   +    L+++  V   ++ 
Sbjct: 293 LFQVMEEEGVQPDKVAFVSLLKAC---NHPEALEQGKRVHARMKEVGLDTEIYVGTALLS 349

Query: 591 IYGRRDKFDKAREVFD 638
           +Y +    + A EVF+
Sbjct: 350 MYTKCGSMEDALEVFN 365


>gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  100 bits (250), Expect = 3e-19
 Identities = 56/186 (30%), Positives = 100/186 (53%)
 Frame = +3

Query: 108 VLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYV 287
           VL  L ++  +++   Y  L+Q C   K +  G+ VH+H+L+  +     ++  +  +YV
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYV 90

Query: 288 ECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVS 467
            CGS+ +AR+LFD+   +   ++  +I  Y   G  ++A  ++  MQ+EGL+ DK   VS
Sbjct: 91  HCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVS 150

Query: 468 ILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKML 647
           IL AC   S+P   +  + +   V+   L ++A V + +I +Y +      AR VFD M 
Sbjct: 151 ILSAC---SSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMA 207

Query: 648 EQDELA 665
            +DE++
Sbjct: 208 SRDEVS 213



 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 48/188 (25%), Positives = 100/188 (53%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           +E++     + +  VR    TY +++  C    A+ +G+ +H  +++   +   ++   +
Sbjct: 228 QESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTAL 287

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
             MY++CG++ DAR++F+ +P RD   +  +I   + +G+ E+A  M+ +M +E +  D+
Sbjct: 288 TKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDR 347

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
              ++IL ACAR   P      + +    V+  L SD +  + +I +Y +      AR+V
Sbjct: 348 VTYLAILSACAR---PGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQV 404

Query: 633 FDKMLEQD 656
           FD+M ++D
Sbjct: 405 FDRMPKRD 412



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 45/191 (23%), Positives = 101/191 (52%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           +EA ++ T +++  +  +  T+ S++  C    A+  GR VH  +++  +   + +   +
Sbjct: 127 QEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNAL 186

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
             MY +CGS+ DAR++FD +  RD  ++  +  AY  +G  +++++ Y  M +EG++  +
Sbjct: 187 ISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSR 246

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
              +++L AC   +     +  + +  ++V  +  SD +V+  +  +Y +      AREV
Sbjct: 247 ITYMNVLSACGSLAA---LEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREV 303

Query: 633 FDKMLEQDELA 665
           F+ +  +D +A
Sbjct: 304 FECLPNRDVIA 314



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 50/194 (25%), Positives = 99/194 (51%)
 Frame = +3

Query: 75  VRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPS 254
           V   +L+EA  +   + K  V  +  TY +++  C     +  G+ +H   +K  +    
Sbjct: 323 VDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDV 382

Query: 255 KMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEE 434
           +    + +MY + GS+ DARQ+FD +PKRD  ++ A++  Y   G+  ++   + KM ++
Sbjct: 383 RFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQ 442

Query: 435 GLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKF 614
           G++++K   + +LKAC   S P      + +  EVV+  + +D  VA+ ++ +Y +    
Sbjct: 443 GVEANKITYMCVLKAC---SNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSV 499

Query: 615 DKAREVFDKMLEQD 656
           + A  V + M  +D
Sbjct: 500 EDAIRVSEGMSTRD 513



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 33/144 (22%), Positives = 71/144 (49%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           LV GY D     ++ E+ S    + ++ V     TY  +++ C +  A+  G+ +H  ++
Sbjct: 419 LVGGYADC---GQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVV 475

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K  +     +   +  MY +CGS+ DA ++ + +  RD   +  +I     NG+  +A++
Sbjct: 476 KAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQ 535

Query: 411 MYVKMQEEGLKSDKHVLVSILKAC 482
            +  M+ E ++ +    V+++ AC
Sbjct: 536 KFEVMKSEEMRPNATTFVNVMSAC 559


>ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546770|sp|O64705.2|PP184_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g34400 gi|330253874|gb|AEC08968.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  100 bits (248), Expect = 5e-19
 Identities = 59/205 (28%), Positives = 110/205 (53%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           ++ G  +T  D   + A+S+   ++   ++ +  TY  +   C   + I  GR VH  + 
Sbjct: 102 MIRGLTNTWNDH--EAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLF 159

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K  +     +   +  MY +CG +G AR+LFDEI +RD  ++ ++I  Y   G  + A++
Sbjct: 160 KVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMD 219

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ KM+EEG + D+  LVS+L AC+     +     ++LEE  + +K+     +   +I 
Sbjct: 220 LFRKMEEEGFEPDERTLVSMLGACSHLGDLR---TGRLLEEMAITKKIGLSTFLGSKLIS 276

Query: 591 IYGRRDKFDKAREVFDKMLEQDELA 665
           +YG+    D AR VF++M+++D +A
Sbjct: 277 MYGKCGDLDSARRVFNQMIKKDRVA 301



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 46/203 (22%), Positives = 101/203 (49%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +++GY +       K+A+ +   +E+     +  T  S++  C     +  GR + +  +
Sbjct: 204 MISGYSEA---GYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 260

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
              + L + +   +  MY +CG L  AR++F+++ K+D   + A+I  Y  NGK  +A +
Sbjct: 261 TKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 320

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ +M++ G+  D   L ++L AC         ++ + +E       L+ +  VA  ++ 
Sbjct: 321 LFFEMEKTGVSPDAGTLSTVLSACGSVGA---LELGKQIETHASELSLQHNIYVATGLVD 377

Query: 591 IYGRRDKFDKAREVFDKMLEQDE 659
           +YG+  + ++A  VF+ M  ++E
Sbjct: 378 MYGKCGRVEEALRVFEAMPVKNE 400


>gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
           gi|20197159|gb|AAM14947.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 617

 Score =  100 bits (248), Expect = 5e-19
 Identities = 59/205 (28%), Positives = 110/205 (53%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           ++ G  +T  D   + A+S+   ++   ++ +  TY  +   C   + I  GR VH  + 
Sbjct: 98  MIRGLTNTWNDH--EAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLF 155

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K  +     +   +  MY +CG +G AR+LFDEI +RD  ++ ++I  Y   G  + A++
Sbjct: 156 KVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMD 215

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ KM+EEG + D+  LVS+L AC+     +     ++LEE  + +K+     +   +I 
Sbjct: 216 LFRKMEEEGFEPDERTLVSMLGACSHLGDLR---TGRLLEEMAITKKIGLSTFLGSKLIS 272

Query: 591 IYGRRDKFDKAREVFDKMLEQDELA 665
           +YG+    D AR VF++M+++D +A
Sbjct: 273 MYGKCGDLDSARRVFNQMIKKDRVA 297



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 46/203 (22%), Positives = 101/203 (49%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           +++GY +       K+A+ +   +E+     +  T  S++  C     +  GR + +  +
Sbjct: 200 MISGYSEA---GYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAI 256

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
              + L + +   +  MY +CG L  AR++F+++ K+D   + A+I  Y  NGK  +A +
Sbjct: 257 TKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 316

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
           ++ +M++ G+  D   L ++L AC         ++ + +E       L+ +  VA  ++ 
Sbjct: 317 LFFEMEKTGVSPDAGTLSTVLSACGSVGA---LELGKQIETHASELSLQHNIYVATGLVD 373

Query: 591 IYGRRDKFDKAREVFDKMLEQDE 659
           +YG+  + ++A  VF+ M  ++E
Sbjct: 374 MYGKCGRVEEALRVFEAMPVKNE 396


>ref|XP_001768535.1| predicted protein [Physcomitrella patens]
           gi|162680248|gb|EDQ66686.1| predicted protein
           [Physcomitrella patens]
          Length = 505

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
 Frame = +3

Query: 27  IAKKFKPGLVNGYKDTVRDDRLK-EAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITE 203
           + K+ +   V G  D +RD  L  +  + L  LE+R +      Y  L++ C   K + E
Sbjct: 8   LKKRRRSRAVVGSDDDIRDLCLNGQPKNSLHILEQRGIEPSSYAYVCLLRRCTHMKDLAE 67

Query: 204 GRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLG 383
           G++VH HM K      + +L  + +MY++CGSL DARQ+FD + +RD + Y  ++  Y  
Sbjct: 68  GKYVHAHMAKSDFVPTTFVLNALVNMYMKCGSLVDARQVFDRMVERDMFTYTMMLTGYAK 127

Query: 384 NGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESD 563
            G  E A +MY +MQ+E +  D+    +IL  C   ST +  +    + +++VR  +  D
Sbjct: 128 LGYPEDAYKMYEQMQKERVPVDRITFTTILNVC---STLRSLEKGMKVHQDMVRGGIRPD 184

Query: 564 AQVAHFMIYIYGRRDKFDKAREVFDKMLEQD 656
             + + +I +Y +     +A  VF +M  +D
Sbjct: 185 IILGNTLIDMYAKCGNLKQAHRVFKEMDNRD 215



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 43/188 (22%), Positives = 94/188 (50%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           ++A  +   ++K  V ++  T+ +++ +C   +++ +G  VH+ M++  +     +   +
Sbjct: 132 EDAYKMYEQMQKERVPVDRITFTTILNVCSTLRSLEKGMKVHQDMVRGGIRPDIILGNTL 191

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
            DMY +CG+L  A ++F E+  RD   +  ++     NG  ++A E +  M +EG K DK
Sbjct: 192 IDMYAKCGNLKQAHRVFKEMDNRDIVTWNIMVGGAARNGYFDEAFEFFKAMLDEGQKPDK 251

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
              +SIL AC         +   +L   +++   E D +V   ++ ++ +      A +V
Sbjct: 252 VTYISILNACTS------LEQGTLLHSVIMKAGFELDVRVGTALVNMFSKCGSVVDALKV 305

Query: 633 FDKMLEQD 656
           F K+ +++
Sbjct: 306 FQKLPQRN 313



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 49/200 (24%), Positives = 97/200 (48%)
 Frame = +3

Query: 57  NGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKH 236
           NGY D        EA      +     + +  TY S++  C    ++ +G  +H  ++K 
Sbjct: 229 NGYFD--------EAFEFFKAMLDEGQKPDKVTYISILNACT---SLEQGTLLHSVIMKA 277

Query: 237 VVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMY 416
              L  ++   + +M+ +CGS+ DA ++F ++P+R+  ++ ++I AY   G+ E+A+E Y
Sbjct: 278 GFELDVRVGTALVNMFSKCGSVVDALKVFQKLPQRNVVSWTSVISAYAQAGEPERALECY 337

Query: 417 VKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIY 596
            KM  EG+ +DK    +IL  CA        +  + +   +V+  + +D    + +I +Y
Sbjct: 338 AKMLNEGMVADKRAYTTILNVCAMLGD---IEKGKAVHGHIVQSGIATDIITENGLIDMY 394

Query: 597 GRRDKFDKAREVFDKMLEQD 656
            +  +   A  +F  M  +D
Sbjct: 395 VKCGRLKDAYRLFQDMNVRD 414



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 39/156 (25%), Positives = 78/156 (50%)
 Frame = +3

Query: 156 YRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIP 335
           Y +++ +C     I +G+ VH H+++  +         + DMYV+CG L DA +LF ++ 
Sbjct: 352 YTTILNVCAMLGDIEKGKAVHGHIVQSGIATDIITENGLIDMYVKCGRLKDAYRLFQDMN 411

Query: 336 KRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDV 515
            RD  ++  +I  ++ + + ++A++ +  MQ EG+  +    + +LKACA        D 
Sbjct: 412 VRDVVSWTTLIEGWVQHRQYQEALDTFNDMQLEGVMPNTVTFLGVLKACA--GMGSLVD- 468

Query: 516 AQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKA 623
            + +   +V   L  +A + H +  +Y + D    A
Sbjct: 469 GKRIHARIVEAGLAENAHIRHALADMYAKCDSCGNA 504


>gb|EOY33969.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
           [Theobroma cacao]
          Length = 542

 Score = 99.4 bits (246), Expect = 9e-19
 Identities = 56/176 (31%), Positives = 99/176 (56%), Gaps = 4/176 (2%)
 Frame = +3

Query: 150 ETYRSLIQLCCDTKAITEGRFVHKHM----LKHVVNLPSKMLWMVFDMYVECGSLGDARQ 317
           + Y +L+++    +A+  GR +H H+    L  + +L SK        Y ECG + DAR+
Sbjct: 25  DAYANLLEIYARDRALKSGRLLHAHLIINGLARLTDLASKFK----AFYTECGQISDARK 80

Query: 318 LFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACARNST 497
           LFD+IPK +   + +II AY   G  ++A+ ++ +MQ EGL  + +V+  ILKAC     
Sbjct: 81  LFDKIPKTNVSRWTSIIGAYCQRGYYQEAINVFSEMQAEGLGVNIYVIPRILKACGHVLD 140

Query: 498 PKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKMLEQDELA 665
               +  + +    +++  E+DA V   +I++Y +  + +KA++VFD M E+D +A
Sbjct: 141 ---QETGEKIHCSCLKKSFETDAFVTSSLIFMYSKCGQVEKAKKVFDGMFEKDLVA 193



 Score = 70.1 bits (170), Expect = 6e-10
 Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 2/198 (1%)
 Frame = +3

Query: 75  VRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPS 254
           V++ R  EA      + K+ +     T  SL+  C     +  G+ VH + L        
Sbjct: 272 VQNFRYDEAFGSFKKMIKQGLYPSSATISSLLPACMSAVNLKLGKEVHGYALVIGAENDI 331

Query: 255 KMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEE 434
            +   + DMY +CG + +AR LF ++ +R+   + ++I  Y  +G  E+A++++ +M+EE
Sbjct: 332 YVKSALVDMYAKCGFISEARTLFYKMSERNTVTWNSMIFGYANHGFCEEAIDLFRQMEEE 391

Query: 435 GLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHF--MIYIYGRRD 608
           G K D     ++L AC   S     ++ Q L   ++ +K +   +  H+  ++ ++GR  
Sbjct: 392 GKKPDHLTFTAVLTAC---SHAGLVELGQSL-FNLMLEKYKITPRSEHYACLVDLFGRAG 447

Query: 609 KFDKAREVFDKMLEQDEL 662
           K ++A +V   M  + +L
Sbjct: 448 KVNEAYDVIKTMPTEPDL 465


>ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322040|gb|EFH52461.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 769

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 57/187 (30%), Positives = 102/187 (54%), Gaps = 1/187 (0%)
 Frame = +3

Query: 78  RDDRLKEAISVLTDLEKRN-VRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPS 254
           R+   +EA+      +K +  +I L TY SLI  C  ++++ +GR +H H+L       +
Sbjct: 40  RNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDT 99

Query: 255 KMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEE 434
            +   +  MY +CGSL DAR++FD +P+R+  +Y ++I  Y  NG+E +A+ +Y+KM + 
Sbjct: 100 ILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQA 159

Query: 435 GLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKF 614
            L  D+    SI+KACA         + + L  +V++ +  S     + +I +Y R ++ 
Sbjct: 160 DLVPDQFAFGSIIKACACAGDVV---LGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQM 216

Query: 615 DKAREVF 635
             A +VF
Sbjct: 217 SDASKVF 223



 Score = 59.7 bits (143), Expect = 8e-07
 Identities = 31/111 (27%), Positives = 61/111 (54%)
 Frame = +3

Query: 153 TYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEI 332
           T  +L++ C +  ++  G  VH +  K  + L   +   + DMY +CGSL  AR++FD +
Sbjct: 472 TMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSM 531

Query: 333 PKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVSILKACA 485
              D  ++  +I+ Y  +G  E+A+ ++ +M+  G++ +    V +L AC+
Sbjct: 532 DNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACS 582


>ref|XP_001775099.1| predicted protein [Physcomitrella patens]
           gi|162673550|gb|EDQ60071.1| predicted protein
           [Physcomitrella patens]
          Length = 804

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 56/186 (30%), Positives = 96/186 (51%)
 Frame = +3

Query: 108 VLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMVFDMYV 287
           VL  L ++  +++   Y  L+Q C   K +  G+ VH+H+L+  V     +   +  +Y 
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 288 ECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDKHVLVS 467
            CGS+ +ARQLFD+   +   ++  +I  Y   G  ++A  ++  MQ+E L+ DK   VS
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVS 134

Query: 468 ILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREVFDKML 647
           IL AC   S+P   +  + +   V+   L +D  V + +I +Y +      AR VFD M 
Sbjct: 135 ILSAC---SSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA 191

Query: 648 EQDELA 665
            +DE++
Sbjct: 192 SRDEVS 197



 Score = 86.3 bits (212), Expect = 8e-15
 Identities = 47/188 (25%), Positives = 98/188 (52%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           +E++     + +  VR    TY +++  C    A+ +G+ +H H+++   +   ++   +
Sbjct: 212 EESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTAL 271

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
             MY++CG+  DAR++F+ +  RD   +  +I  ++ +G+ E+A   + +M EEG+  D+
Sbjct: 272 TKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDR 331

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
               ++L ACAR   P      + +     +  L SD +  + +I +Y +      AR+V
Sbjct: 332 ATYTTVLSACAR---PGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQV 388

Query: 633 FDKMLEQD 656
           FD+M ++D
Sbjct: 389 FDRMPKRD 396



 Score = 77.8 bits (190), Expect = 3e-12
 Identities = 44/191 (23%), Positives = 99/191 (51%)
 Frame = +3

Query: 93  KEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKMLWMV 272
           +EA ++ T +++  +  +  T+ S++  C     +  GR +H  +++  +   + +   +
Sbjct: 111 QEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNAL 170

Query: 273 FDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLKSDK 452
             MY +CGS+ DAR++FD +  RD  ++  +  AY  +G  E++++ Y  M +E ++  +
Sbjct: 171 ISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSR 230

Query: 453 HVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIYIYGRRDKFDKAREV 632
              +++L AC   +     +  + +   +V  +  SD +V+  +  +Y +   F  AREV
Sbjct: 231 ITYMNVLSACGSLAA---LEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREV 287

Query: 633 FDKMLEQDELA 665
           F+ +  +D +A
Sbjct: 288 FECLSYRDVIA 298



 Score = 76.6 bits (187), Expect = 6e-12
 Identities = 49/202 (24%), Positives = 100/202 (49%)
 Frame = +3

Query: 51  LVNGYKDTVRDDRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHML 230
           ++ G+ D+    +L+EA      + +  V  +  TY +++  C     +  G+ +H    
Sbjct: 302 MIRGFVDS---GQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAA 358

Query: 231 KHVVNLPSKMLWMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVE 410
           K  +    +    + +MY + GS+ DARQ+FD +PKRD  ++  ++  Y    +  ++  
Sbjct: 359 KDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFT 418

Query: 411 MYVKMQEEGLKSDKHVLVSILKACARNSTPKFPDVAQMLEEEVVRQKLESDAQVAHFMIY 590
            + +M ++G+K++K   + +LKAC   S P      + +  EVV+  L +D  V + ++ 
Sbjct: 419 TFKQMLQQGVKANKITYMCVLKAC---SNPVALKWGKEIHAEVVKAGLLADLAVTNALMS 475

Query: 591 IYGRRDKFDKAREVFDKMLEQD 656
           +Y +    + A  VF+ M  +D
Sbjct: 476 MYFKCGSVEDAIRVFEGMSMRD 497



 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 32/133 (24%), Positives = 70/133 (52%)
 Frame = +3

Query: 84  DRLKEAISVLTDLEKRNVRIELETYRSLIQLCCDTKAITEGRFVHKHMLKHVVNLPSKML 263
           D++ E+ +    + ++ V+    TY  +++ C +  A+  G+ +H  ++K  +     + 
Sbjct: 411 DQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVT 470

Query: 264 WMVFDMYVECGSLGDARQLFDEIPKRDFYNYKAIIMAYLGNGKEEKAVEMYVKMQEEGLK 443
             +  MY +CGS+ DA ++F+ +  RD   +  +I     NG+  +A++ Y  M+ EG++
Sbjct: 471 NALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMR 530

Query: 444 SDKHVLVSILKAC 482
            +    V++L AC
Sbjct: 531 PNAATFVNVLSAC 543