BLASTX nr result
ID: Ephedra28_contig00029168
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00029168
(382 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_005711125.1| unnamed protein product, partial [Chondrus c... 62 6e-08
ref|XP_005709958.1| unnamed protein product [Chondrus crispus] g... 62 6e-08
ref|XP_005714683.1| unnamed protein product [Chondrus crispus] g... 62 8e-08
ref|XP_005717319.1| RNA-dependent DNA polymerase [Chondrus crisp... 62 1e-07
ref|XP_005715938.1| unnamed protein product [Chondrus crispus] g... 62 1e-07
ref|XP_005710287.1| unnamed protein product [Chondrus crispus] g... 62 1e-07
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 62 1e-07
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 61 1e-07
gb|ABW74576.1| pol polyprotein [Boechera divaricarpa] 61 1e-07
emb|CAN60570.1| hypothetical protein VITISV_000227 [Vitis vinifera] 61 1e-07
ref|XP_005717687.1| unnamed protein product [Chondrus crispus] g... 60 3e-07
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 60 4e-07
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 60 4e-07
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 60 4e-07
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 60 4e-07
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 60 4e-07
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 60 4e-07
gb|EOY26809.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) ... 57 2e-06
emb|CAN66566.1| hypothetical protein VITISV_018543 [Vitis vinifera] 57 2e-06
emb|CAN72453.1| hypothetical protein VITISV_008931 [Vitis vinifera] 57 2e-06
>ref|XP_005711125.1| unnamed protein product, partial [Chondrus crispus]
gi|507107329|emb|CDF40831.1| unnamed protein product,
partial [Chondrus crispus]
Length = 661
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/89 (40%), Positives = 51/89 (57%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AKE +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 538 RVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 597
Query: 200 NIKITIRSTNTQDMDSGTLPEEGKLPPNN 114
K + + MD+ EE PP N
Sbjct: 598 GGK------SGEPMDTNE-EEETIDPPTN 619
>ref|XP_005709958.1| unnamed protein product [Chondrus crispus]
gi|507105973|emb|CDF39664.1| unnamed protein product
[Chondrus crispus]
Length = 728
Score = 62.4 bits (150), Expect = 6e-08
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AKE +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 580 RVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 639
Query: 200 NIKITIRSTNTQDMDSGTLPEEGK 129
K + D S + P G+
Sbjct: 640 GGK------SDSDESSNSSPTAGE 657
>ref|XP_005714683.1| unnamed protein product [Chondrus crispus]
gi|507111129|emb|CDF34864.1| unnamed protein product
[Chondrus crispus]
Length = 779
Score = 62.0 bits (149), Expect = 8e-08
Identities = 34/91 (37%), Positives = 50/91 (54%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AKE +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 647 RVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 706
Query: 200 NIKITIRSTNTQDMDSGTLPEEGKLPPNNTN 108
K S N + P E + ++N
Sbjct: 707 GGK----SENNAVASEASSPNEQQDSDESSN 733
>ref|XP_005717319.1| RNA-dependent DNA polymerase [Chondrus crispus]
gi|515797405|emb|CDF77535.1| RNA-dependent DNA
polymerase [Chondrus crispus]
Length = 1372
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AKE +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 668 RVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 727
Query: 200 NIK 192
K
Sbjct: 728 GGK 730
>ref|XP_005715938.1| unnamed protein product [Chondrus crispus]
gi|507112437|emb|CDF36119.1| unnamed protein product
[Chondrus crispus]
Length = 753
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AKE +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 644 RVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 703
Query: 200 NIK 192
K
Sbjct: 704 GGK 706
>ref|XP_005710287.1| unnamed protein product [Chondrus crispus]
gi|507106340|emb|CDF39993.1| unnamed protein product
[Chondrus crispus]
Length = 678
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AKE +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 573 RVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 632
Query: 200 NIK 192
K
Sbjct: 633 GGK 635
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 61.6 bits (148), Expect = 1e-07
Identities = 35/113 (30%), Positives = 60/113 (53%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
+ FG ++H+ E KL+ +AK+GVF+ Y G KG+ IW ++R I+SRN +F E
Sbjct: 638 KAFGCTAYYHVSEG---KLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESP 694
Query: 200 NIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTP 42
++ ++ T T + S E ++ N +++K P + E + P D P
Sbjct: 695 LLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEP----EEEDQEPQTETDIP 743
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 61.2 bits (147), Expect = 1e-07
Identities = 28/76 (36%), Positives = 46/76 (60%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFG + HIP+ R KL+ K+ E +FI + G KGY +WD ++++ISR+ +F E
Sbjct: 621 RVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDERE 680
Query: 200 NIKITIRSTNTQDMDS 153
I I++ + D ++
Sbjct: 681 AISISLAKPSVADSEA 696
>gb|ABW74576.1| pol polyprotein [Boechera divaricarpa]
Length = 708
Score = 61.2 bits (147), Expect = 1e-07
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKE 207
+VFGS + HIP++ R KLD+KAK G+FI Y + +KGY + DK ISR+ +FKE
Sbjct: 481 KVFGSICYIHIPKEKRSKLDKKAKRGIFISYSSKSKGYRVLLLDKTEIEISRDVVFKE 538
>emb|CAN60570.1| hypothetical protein VITISV_000227 [Vitis vinifera]
Length = 605
Score = 61.2 bits (147), Expect = 1e-07
Identities = 27/72 (37%), Positives = 45/72 (62%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
R+FG + HIP ++R KLD+K+++ +F+ Y G KG+ IWD + +ISR+ +F E T
Sbjct: 158 RLFGCPTYVHIPNEDRSKLDEKSRQCIFLGYQKGVKGFKIWDPKANKVVISRDVVFDEKT 217
Query: 200 NIKITIRSTNTQ 165
++ S + Q
Sbjct: 218 MLQWKSSSEDQQ 229
>ref|XP_005717687.1| unnamed protein product [Chondrus crispus]
gi|507114245|emb|CDF37816.1| unnamed protein product
[Chondrus crispus]
Length = 668
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGSK ++ +P+ N +KLD +AK+ +F+ Y TK Y +WD D + I+SR+ F E T
Sbjct: 597 RVFGSKCWYTLPKHNIQKLDARAKKAMFLGYAENTKAYKLWDGDLHKVIVSRDVTFDEST 656
Query: 200 NIK 192
K
Sbjct: 657 GGK 659
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 59.7 bits (143), Expect = 4e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFK--- 210
RVFGS H+P++ R KLD K+++ +FI Y +KGY +++ D ++ IISRN +F
Sbjct: 695 RVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG 754
Query: 209 EWTNIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTPIDTK 30
EW N+ + D P + P T + P E P P +P ++
Sbjct: 755 EW--------DWNSNEEDYNFFPHFEEDEPEPTREEPP-------SEEPTTPPTSPTSSQ 799
Query: 29 I 27
I
Sbjct: 800 I 800
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 59.7 bits (143), Expect = 4e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFK--- 210
RVFGS H+P++ R KLD K+++ +FI Y +KGY +++ D ++ IISRN +F
Sbjct: 695 RVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG 754
Query: 209 EWTNIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTPIDTK 30
EW N+ + D P + P T + P E P P +P ++
Sbjct: 755 EW--------DWNSNEEDYNFFPHFEEDKPEPTREEPP-------SEEPTTPPTSPTSSQ 799
Query: 29 I 27
I
Sbjct: 800 I 800
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 59.7 bits (143), Expect = 4e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFK--- 210
RVFGS H+P++ R KLD K+++ +FI Y +KGY +++ D ++ IISRN +F
Sbjct: 192 RVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG 251
Query: 209 EWTNIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTPIDTK 30
EW N+ + D P + P T + P E P P +P ++
Sbjct: 252 EW--------DWNSNEEDYNFFPHFEEDKPEPTREEPP-------SEEPTTPPTSPTSSQ 296
Query: 29 I 27
I
Sbjct: 297 I 297
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 59.7 bits (143), Expect = 4e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFK--- 210
RVFGS H+P++ R KLD K+++ +FI Y +KGY +++ D ++ IISRN +F
Sbjct: 695 RVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG 754
Query: 209 EWTNIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTPIDTK 30
EW N+ + D P + P T + P E P P +P ++
Sbjct: 755 EW--------DWNSNEEDYNFFPHFEEDEPEPTREEPP-------SEEPTTPPTSPTSSQ 799
Query: 29 I 27
I
Sbjct: 800 I 800
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 59.7 bits (143), Expect = 4e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFK--- 210
RVFGS H+P++ R KLD K+++ +FI Y +KGY +++ D ++ IISRN +F
Sbjct: 695 RVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG 754
Query: 209 EWTNIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTPIDTK 30
EW N+ + D P + P T + P E P P +P ++
Sbjct: 755 EW--------DWNSNEEDYNFFPHFEEDKPEPTREEPP-------SEEPTTPPTSPTSSQ 799
Query: 29 I 27
I
Sbjct: 800 I 800
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 59.7 bits (143), Expect = 4e-07
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFK--- 210
RVFGS H+P++ R KLD K+++ +FI Y +KGY +++ D ++ IISRN +F
Sbjct: 695 RVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEG 754
Query: 209 EWTNIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCKTEKEHPIEPKDTPIDTK 30
EW N+ + D P + P T + P E P P +P ++
Sbjct: 755 EW--------DWNSNEEDYNFFPHFEEDEPEPTREEPP-------SEEPTTPPTSPTSSQ 799
Query: 29 I 27
I
Sbjct: 800 I 800
>gb|EOY26809.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma
cacao]
Length = 1255
Score = 57.4 bits (137), Expect = 2e-06
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
RVFGS F ++RKKLDQ+A + +F+ Y TKGY ++D + R IISRN +F E T
Sbjct: 523 RVFGSLCFVSTLSQHRKKLDQRATKCIFLGYPNNTKGYRVYDLNANRIIISRNIVFHEGT 582
Query: 200 NIKITIRSTNTQDMDSGTLPEEGKLPPNNTNMKVPIPNCK------TEKEHPIEPKDTPI 39
+ + T + TL K P + K+P +C+ T P TP
Sbjct: 583 FPFQSKQHTTWPEPFCQTLGMHTKYSP-QIDSKLPNFHCQDYIPADTYSSEPNTSAQTPS 641
Query: 38 DTKI 27
++I
Sbjct: 642 TSQI 645
>emb|CAN66566.1| hypothetical protein VITISV_018543 [Vitis vinifera]
Length = 287
Score = 57.4 bits (137), Expect = 2e-06
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKEWT 201
+VFG + HIP + R KLD K+++ +F+ Y KG+ +WD + +ISR+ +F E +
Sbjct: 34 KVFGCPTYVHIPNEERSKLDAKSRQFIFLGYQKVVKGFKLWDPKANKVVISRDVVFDEKS 93
Query: 200 NIKIT-IRSTNTQDMDSGTLPEEGKL 126
I++ ++S +++ D L K+
Sbjct: 94 MIEVNKLKSLLSKEFDMNDLGATKKI 119
>emb|CAN72453.1| hypothetical protein VITISV_008931 [Vitis vinifera]
Length = 977
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = -3
Query: 380 RVFGSK*FFHIPEKNRKKLDQKAKEGVFIEYLAGTKGYLIWDTDKQREIISRNAIFKE 207
+VFGS + H+P R KLD++AK+GVF+ Y A +KGY I+ + + +ISR F E
Sbjct: 426 KVFGSFCYLHVPSVKRGKLDERAKKGVFVGYAAESKGYRIYSLSRMKIVISREVHFDE 483