BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029073
         (536 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17838.1| unknown [Picea sitchensis]                             128   7e-28
ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containi...   122   5e-26
gb|ABR16216.1| unknown [Picea sitchensis]                             120   3e-25
gb|EOY16621.1| Pentatricopeptide repeat superfamily protein [The...   117   2e-24
ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selag...   117   2e-24
ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Sela...   117   2e-24
ref|XP_002517972.1| pentatricopeptide repeat-containing protein,...   115   8e-24
ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23
ref|NP_173004.1| pentatricopeptide repeat-containing protein [Ar...   114   1e-23
ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containi...   114   2e-23
emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]   114   2e-23
ref|XP_002890108.1| pentatricopeptide repeat-containing protein ...   113   2e-23
ref|XP_006306315.1| hypothetical protein CARUB_v10012185mg [Caps...   113   3e-23
ref|XP_004308660.1| PREDICTED: pentatricopeptide repeat-containi...   113   3e-23
ref|XP_003518395.2| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23
ref|XP_002307479.2| pentatricopeptide repeat-containing family p...   112   4e-23
ref|XP_006853510.1| hypothetical protein AMTR_s00032p00219990 [A...   112   5e-23
ref|XP_004292257.1| PREDICTED: pentatricopeptide repeat-containi...   112   5e-23
ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing prote...   112   5e-23
ref|XP_004305327.1| PREDICTED: putative pentatricopeptide repeat...   112   7e-23

>gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  128 bits (322), Expect = 7e-28
 Identities = 76/183 (41%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V W   II   KNG   +AL LY +M+  G  +PD L F +V +ACG    L  G  +
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H D+I  GF  +V V   L  MY KCG +E+A ++FD       +V  WNA+I GY  NG
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKR--DVVSWNAIIAGYSQNG 200

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
              +AL  F+EM+ +    N +TLV+V+  C++L  LE GK +HC  I+SG +SD+ + N
Sbjct: 201 QPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVN 260

Query: 10  GNV 2
           G V
Sbjct: 261 GLV 263



 Score =  109 bits (273), Expect = 3e-22
 Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
 Frame = -2

Query: 526 SWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHAD 347
           SWN +I   + N    EALA + +M+  G   P+ +T  +V  AC HL  L  G  IH  
Sbjct: 289 SWNAIIGGYSLNSQHHEALAFFNRMQVRG-IKPNSITMVSVLPACAHLFALEQGQQIHGY 347

Query: 346 VIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFD 173
            I+ GF  N  V   L+ MYAKCG +  A ++F+       NV  WNA+I GY  +G   
Sbjct: 348 AIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKK--NVVAWNAIISGYSQHGHPH 405

Query: 172 KALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGNV 2
           +AL  F EM+      +   +V+VL AC++   LE GK +H   I+SGF+S++ +  G V
Sbjct: 406 EALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLV 465



 Score =  107 bits (268), Expect = 1e-21
 Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 5/181 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSWN +I   ++NG   EALAL+ +M ++    P+  T  +V   C HL  L  G  IH 
Sbjct: 187 VSWNAIIAGYSQNGQPYEALALFSEM-QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHC 245

Query: 349 DVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
             I+ G   +V V   L+ MYAKCG +  A ++F+     + +V  WNA+I GY  N   
Sbjct: 246 YAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFE--RMPIRDVASWNAIIGGYSLNSQH 303

Query: 175 DKALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGN 5
            +AL  F  M+      N  T+V+VL AC++L  LE G+ +H   I+SGF+S+  + N  
Sbjct: 304 HEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNAL 363

Query: 4   V 2
           V
Sbjct: 364 V 364



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 5/167 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V+WN +I   +++G+  EALAL+ +M+  G   PD     +V  AC H   L  G  I
Sbjct: 387 NVVAWNAIISGYSQHGHPHEALALFIEMQAQG-IKPDSFAIVSVLPACAHFLALEQGKQI 445

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   I+ GF  NV V   L+++YAKCG +  A ++F+       +V  W  MI  Y  +G
Sbjct: 446 HGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ--DVVSWTTMILAYGIHG 503

Query: 181 CFDKALGCFAEM-EGSANLN--TLVNVLSACSNLALLETGKGVHCCI 50
             + AL  F++M E    L+      +L+ACS+  L++ G     C+
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCM 550


>ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
           gi|449493172|ref|XP_004159212.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  122 bits (306), Expect = 5e-26
 Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 5/181 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           V W T+I A  +N   +EAL  +          PD  TF +V  ACG+LG L  G+ IHA
Sbjct: 229 VCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHA 288

Query: 349 DVIKFGFSKNV--EVQLIEMYAKCGGMEHATRIFD---NRNADVFNVQHWNAMIWGYVHN 185
            VI +GFS NV  E  L++MY KCG +E + R+FD   NRN+       W+A++  Y HN
Sbjct: 289 KVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNS-----VSWSALLAVYCHN 343

Query: 184 GCFDKALGCFAEMEGSANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGN 5
           G ++KA+  F EM+   +L +   V+ AC+ LA +  GK +HC  I+ G   D+ +E+  
Sbjct: 344 GDYEKAVNLFREMK-EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESAL 402

Query: 4   V 2
           V
Sbjct: 403 V 403



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 5/161 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSW+ L+     NG+ ++A+ L+R+M+E+     DL +F TV  AC  L  +  G  I
Sbjct: 329 NSVSWSALLAVYCHNGDYEKAVNLFREMKEV-----DLYSFGTVIRACAGLAAVTPGKEI 383

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   I+ G  ++V V+  L+++YAKCG +  A R+FD       N+  WN+MI G+  NG
Sbjct: 384 HCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRVFD--RMPTRNLITWNSMIHGFAQNG 441

Query: 181 CFDKALGCFAEM--EG-SANLNTLVNVLSACSNLALLETGK 68
               A+  F  M  EG   +  + + +L ACS+  L++  +
Sbjct: 442 SSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQAR 482



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 6/168 (3%)
 Frame = -2

Query: 511 IIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADVIKFG 332
           I+   K+G   +AL L   +          L +A++ + C  +     G   HA V+K G
Sbjct: 31  ILQFCKSGLLNDALHLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVKSG 90

Query: 331 FSKN--VEVQLIEMYAKCGGMEHATR-IFDNRNADVFNVQHWNAMIWGYVHNGCFDKALG 161
              +  V   L+ +Y K G     TR +FD     V +V  W +MI GYV  G    A+ 
Sbjct: 91  LETDRFVGNSLLSLYFKLGSDSLLTRRVFDG--LFVKDVVSWASMITGYVREGKSGIAIE 148

Query: 160 CFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSD 26
            F +M  S    N  TL  V+ ACS +  L  GK  H  +++ GFDS+
Sbjct: 149 LFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSN 196


>gb|ABR16216.1| unknown [Picea sitchensis]
          Length = 394

 Score =  120 bits (300), Expect = 3e-25
 Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
 Frame = -2

Query: 523 WNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADV 344
           WN +I    K+G ++EAL LY +M+++   +PD  T+++V  AC  L  L+ G  I+ ++
Sbjct: 80  WNVMIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEI 139

Query: 343 IKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFDK 170
           I  G   +V V+  LI M+ KCG +E A R+FD       N+  W AM+ GY   G  D+
Sbjct: 140 ISKGCEMDVIVENALINMFMKCGSIEDARRVFDKMCER--NLVSWTAMVSGYAQGGFADE 197

Query: 169 ALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           AL  F EM+G    AN  T+ +VL AC+ L+ L+ GK +H  II+ G D  I + N
Sbjct: 198 ALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGN 253



 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 63/215 (29%), Positives = 97/215 (45%), Gaps = 40/215 (18%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSW  ++   A+ G + EAL ++ +M+   D   + +T A+V  AC  L  L  G  I
Sbjct: 178 NLVSWTAMVSGYAQGGFADEALRMFYEMQG-EDVKANYVTVASVLPACAQLSDLQQGKEI 236

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H  +I+ G    + V   LI+MYAKCG +  A ++FD       +V  WN  I GY  NG
Sbjct: 237 HGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQR--DVVSWNVAIAGYAQNG 294

Query: 181 CFDKALGCFAEMEGSA--------------------------------------NLNTLV 116
            FD+ +  F +M+ +                                       N  T+ 
Sbjct: 295 RFDECMELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIA 354

Query: 115 NVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           +VLSAC+ ++ L+ GK +H  + +S   SDI + N
Sbjct: 355 SVLSACAAVSALQEGKRIHDLVNRSECKSDICVGN 389



 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
 Frame = -2

Query: 358 IHADVIKFGFSK--NVEVQLIEMYAKCGGMEHATRIFDN-RNADVFNVQHWNAMIWGYVH 188
           +HA ++  G  +  +VE +L+ +Y KCG +  A   FDN    DVF    WN MI GYV 
Sbjct: 33  VHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKGDVF---PWNVMIGGYVK 89

Query: 187 NGCFDKALGCFAEMEGSANLN----TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIF 20
           +G   +AL  + +M+  ++ N    T  +VL+AC+ LA L  GK ++  II  G + D+ 
Sbjct: 90  HGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVI 149

Query: 19  IEN 11
           +EN
Sbjct: 150 VEN 152


>gb|EOY16621.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
          Length = 1030

 Score =  117 bits (293), Expect = 2e-24
 Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 5/183 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V+WN +I  + K G   EA+A ++ MR  G  S    T  +V  A   L  L++G  +
Sbjct: 296 NVVAWNVMISGHTKRGYEVEAIAFFQNMRASGVKSTRS-TLGSVLSAIASLAALHFGLLV 354

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           HA+ IK G + NV V   LI MYAKC  ++ A ++FD    D  NV  WNAM+ GY  NG
Sbjct: 355 HAEAIKQGLNSNVYVGSSLISMYAKCEQIDAAKKVFDG--LDEKNVVLWNAMLGGYAQNG 412

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
             D+ +  F++M+GS    +  T  ++LSAC+ L  LETG   H  IIK+ F S++F+ N
Sbjct: 413 YADEVIELFSQMKGSGFHPDEFTYTSILSACACLECLETGCQFHAFIIKNKFASNLFVAN 472

Query: 10  GNV 2
             V
Sbjct: 473 ALV 475



 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 6/178 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V WN ++   A+NG + E + L+ +M+  G   PD  T+ ++  AC  L CL  G   
Sbjct: 397 NVVLWNAMLGGYAQNGYADEVIELFSQMKGSG-FHPDEFTYTSILSACACLECLETGCQF 455

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDN-RNADVFNVQHWNAMIWGYVHN 185
           HA +IK  F+ N+ V   L++MYAK G ++ A + F+  +N D  NV  WNA+I GYV  
Sbjct: 456 HAFIIKNKFASNLFVANALVDMYAKSGALKEARQQFEIIKNQD--NVS-WNAIIVGYVQE 512

Query: 184 GCFDKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIF 20
               +A   F  M     +    +L + LSAC+N+  LE GK  HC  +KS  ++ ++
Sbjct: 513 EDELEAFNMFQRMISCGIVPDEVSLASTLSACANVQSLEQGKQFHCLAVKSCLETSLY 570



 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 5/169 (2%)
 Frame = -2

Query: 529  VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
            V W  L+  + +N  ++EAL  + +MR   +  PD  TF +V  AC  L  L  G  IH 
Sbjct: 703  VLWTALVSGHTQNDCNEEALHFFLEMRSY-NVLPDQATFVSVLRACAVLSSLREGRQIHT 761

Query: 349  DVIK--FGFSKNVEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
             +    +G  +     L++MYAKCG ++ + ++F   N+   +V  WN+MI G+  NG  
Sbjct: 762  LIYHTGYGLDELTTSALVDMYAKCGEVDCSAQVFVEMNSK-NDVICWNSMIVGFAKNGYA 820

Query: 175  DKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSG 38
            + AL  F EM+ +  +    T + VL+ACS+   +  G+ +   ++  G
Sbjct: 821  EGALRIFVEMKQTHVMPDDVTFLGVLTACSHAGKVSEGRQIFDMMVNYG 869



 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
 Frame = -2

Query: 529  VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
            VS N++I   A   +  EA+ L+R+M ++    P  +TFA++ EAC     LN G  IH 
Sbjct: 601  VSMNSMIAGYAPE-DLDEAMILFREM-QVNGLKPSEVTFASLLEACNEPHKLNVGRQIHC 658

Query: 349  DVIKFGFSKNVE---VQLIEMYAKCGGMEHATRIF----DNRNADVFNVQHWNAMIWGYV 191
             ++K G   + E   V L+ MY        A  +F    D ++A +     W A++ G+ 
Sbjct: 659  LIVKRGLLYDEEFLGVSLLGMYMNSLRNTDARNLFAEFQDRKSAVL-----WTALVSGHT 713

Query: 190  HNGCFDKALGCFAEMEGSANL---NTLVNVLSACSNLALLETGKGVHCCIIKSGFDSD 26
             N C ++AL  F EM     L    T V+VL AC+ L+ L  G+ +H  I  +G+  D
Sbjct: 714  QNDCNEEALHFFLEMRSYNVLPDQATFVSVLRACAVLSSLREGRQIHTLIYHTGYGLD 771



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           + VSWN +I+   +  +  EA  ++++M   G   PD ++ A+   AC ++  L  G   
Sbjct: 498 DNVSWNAIIVGYVQEEDELEAFNMFQRMISCG-IVPDEVSLASTLSACANVQSLEQGKQF 556

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   +K     ++     LI+MYAKCG +  A ++        ++V   N+MI GY    
Sbjct: 557 HCLAVKSCLETSLYAGSALIDMYAKCGAIGDARKVL--CCMPEWSVVSMNSMIAGYAPED 614

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSG 38
             D+A+  F EM+ +    +  T  ++L AC+    L  G+ +HC I+K G
Sbjct: 615 -LDEAMILFREMQVNGLKPSEVTFASLLEACNEPHKLNVGRQIHCLIVKRG 664



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           ++WN++I+  +  G  +E +     +   G   P+  T AT+  AC  L  +  G  +H 
Sbjct: 131 LAWNSVILMYSNRGLVEEVVKGTVSLLNCG-VLPNEFTLATLLSACARLRDVEVGRIVHC 189

Query: 349 DVIKFGF--SKNVEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            ++K G   S   E  LI+MY+KC  +  A R+FD  + D+  V  W +MI GYV  G  
Sbjct: 190 YIVKMGLEVSSFCEGALIDMYSKCYYVTDARRVFDG-SVDLDTVS-WTSMIAGYVQFGLP 247

Query: 175 DKALGCFAEME 143
           ++AL  F  M+
Sbjct: 248 EEALKVFESMQ 258



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
 Frame = -2

Query: 376 LNYGDGIHADVIKFGF-SKNVEVQ-LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMI 203
           L  G  IHA  +K GF SK +    ++++YAKCG ++ A + F     +  +V  WN++I
Sbjct: 80  LKAGKMIHARGLKLGFWSKGLLGNAILDLYAKCGDVDSAEKAF--HGLEKRDVLAWNSVI 137

Query: 202 WGYVHNGCFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFD 32
             Y + G  ++ +     +       N  TL  +LSAC+ L  +E G+ VHC I+K G +
Sbjct: 138 LMYSNRGLVEEVVKGTVSLLNCGVLPNEFTLATLLSACARLRDVEVGRIVHCYIVKMGLE 197

Query: 31  SDIFIE 14
              F E
Sbjct: 198 VSSFCE 203


>ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
           gi|300168345|gb|EFJ34949.1| hypothetical protein
           SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  117 bits (292), Expect = 2e-24
 Identities = 64/178 (35%), Positives = 103/178 (57%), Gaps = 3/178 (1%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N+ SW +++ A A+NG+ + AL LY++M    D  P+ + + TV  AC  +  L  G  I
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIKALEEGKAI 143

Query: 355 HADVIKF-GFSKNV--EVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHN 185
           H+ +    G   +V  E  L+ MYAKCG +E A R+F+  +    +V  WNAMI  Y  +
Sbjct: 144 HSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGR--SVSSWNAMIAAYAQS 201

Query: 184 GCFDKALGCFAEMEGSANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           G F++A+  + +M+   ++ T  +VLSACSNL LL+ G+ +H  I   G + D+ ++N
Sbjct: 202 GHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 259



 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
 Frame = -2

Query: 526 SWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHAD 347
           SWN +I A A++G+ +EA+ LY  M    D  P + TF +V  AC +LG L+ G  IHA 
Sbjct: 190 SWNAMIAAYAQSGHFEEAIRLYEDM----DVEPSVRTFTSVLSACSNLGLLDQGRKIHAL 245

Query: 346 VIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFD 173
           +   G   ++ +Q  L+ MYA+C  ++ A +IF        +V  W+AMI  +     FD
Sbjct: 246 ISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRR--DVVSWSAMIAAFAETDLFD 303

Query: 172 KALGCFAEM--EG-SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGF 35
           +A+  +++M  EG   N  T  +VL AC+++  L  G+ VH  I+ +G+
Sbjct: 304 EAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY 352



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           +E  W  LI   +K G+    L LYR+M+         + ++ V  AC  LG        
Sbjct: 386 DEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA 445

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H+D+   G   +  +   L+ MY++ G +E A ++FD  ++   +   W  +I GY  +G
Sbjct: 446 HSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR--DTLAWTTLIAGYAKHG 503

Query: 181 CFDKALGCFAEME---GSANLNTLVNVLSACSNLALLETGK 68
               ALG + EME      +  T + VL ACS+  L E GK
Sbjct: 504 EHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGK 544



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSW+ +I A A+     EA+  Y KM+  G   P+  TFA+V  AC  +G L  G  +H 
Sbjct: 287 VSWSAMIAAFAETDLFDEAIEFYSKMQLEG-VRPNYYTFASVLLACASVGDLRAGRAVHD 345

Query: 349 DVIKFGFSKNV--EVQLIEMYAKCGGMEHATRIFD---NRNADVFNVQHWNAMIWGYVHN 185
            ++  G+   +     L+++Y   G ++ A  +FD   NR+  +     W  +I GY   
Sbjct: 346 QILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL-----WTVLIGGYSKQ 400

Query: 184 GCFDKALGCFAEMEGSANLNT----LVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFI 17
           G     L  + EM+ +  +         V+SAC++L      +  H  I   G  SD  +
Sbjct: 401 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 460


>ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
           gi|300143350|gb|EFJ10041.1| hypothetical protein
           SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  117 bits (292), Expect = 2e-24
 Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 3/178 (1%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N+ SW +++ A A+NG+ + AL LY++M    D  P+ + + TV  AC  +  L  G  I
Sbjct: 88  NDYSWGSMLTAYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIEALEEGKAI 143

Query: 355 HADVIKF-GFSKNV--EVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHN 185
           H+ +    G   +V  E  L+ MYAKCG +E A R+F+ R +   +V  WNAMI  Y  +
Sbjct: 144 HSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFE-RMSGRRSVSSWNAMIAAYAQS 202

Query: 184 GCFDKALGCFAEMEGSANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           G F++A+  + +M+   ++ T  +VLSACSNL LL+ G+ +H  I   G + D+ ++N
Sbjct: 203 GHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 260



 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
 Frame = -2

Query: 526 SWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHAD 347
           SWN +I A A++G+ +EA+ LY  M    D  P + TF +V  AC +LG L+ G  IHA 
Sbjct: 191 SWNAMIAAYAQSGHFEEAIRLYEDM----DVEPSVRTFTSVLSACSNLGLLDQGRKIHAL 246

Query: 346 VIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFD 173
           +   G   ++ +Q  L+ MYA+C  ++ A +IF        +V  W+AMI  +     FD
Sbjct: 247 ISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRR--DVVSWSAMIAAFAETDLFD 304

Query: 172 KALGCFAEM--EG-SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGF 35
           +A+  +++M  EG   N  T  +VL AC+++  L  G+ VH  I+ +G+
Sbjct: 305 EAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY 353



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           +E  W  LI   +K G+    L LYR+M+         + ++ V  AC  LG        
Sbjct: 387 DEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA 446

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H+D+   G   +  +   L+ MY++ G +E A ++FD  ++   +   W  +I GY  +G
Sbjct: 447 HSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR--DTLAWTTLIAGYAKHG 504

Query: 181 CFDKALGCFAEME---GSANLNTLVNVLSACSNLALLETGK 68
               ALG + EME      +  T + VL ACS+  L E GK
Sbjct: 505 EHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGK 545



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSW+ +I A A+     EA+  Y KM+  G   P+  TFA+V  AC  +G L  G  +H 
Sbjct: 288 VSWSAMIAAFAETDLFDEAIEFYSKMQLEG-VRPNYYTFASVLLACASVGDLRAGRAVHD 346

Query: 349 DVIKFGFSKNV--EVQLIEMYAKCGGMEHATRIFD---NRNADVFNVQHWNAMIWGYVHN 185
            ++  G+   +     L+++Y   G ++ A  +FD   NR+  +     W  +I GY   
Sbjct: 347 QILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL-----WTVLIGGYSKQ 401

Query: 184 GCFDKALGCFAEMEGSANLNT----LVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFI 17
           G     L  + EM+ +  +         V+SAC++L      +  H  I   G  SD  +
Sbjct: 402 GHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVL 461


>ref|XP_002517972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542954|gb|EEF44490.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 483

 Score =  115 bits (287), Expect = 8e-24
 Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           + W ++I A  +N    +AL  +  M+     +PD  TF TV  ACG+L  L  G  +HA
Sbjct: 220 ICWTSVISAYTRNDMYDKALGFFYLMQRKLGLAPDGFTFGTVLTACGNLRRLKQGKEVHA 279

Query: 349 DVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            +I  GFS NV V+  L++MY KCG ++ + R+FD  +  V N   W+A++ G+  NG F
Sbjct: 280 KLITSGFSGNVVVESSLVDMYGKCGLVDESQRVFDRMS--VKNSVSWSALLGGFCQNGDF 337

Query: 175 DKALGCFAEMEGSANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGNV 2
           +  +  F EM  + +L +   VL AC+ LA +  GK VHC  ++ G   D+ IE+  V
Sbjct: 338 ESVIRIFREMGEADDLYSFGTVLRACAGLAAVRQGKEVHCQYVRRGGWRDVIIESALV 395



 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSW+ L+    +NG+ +  + ++R+M E    + DL +F TV  AC  L  +  G  +
Sbjct: 320 NSVSWSALLGGFCQNGDFESVIRIFREMGE----ADDLYSFGTVLRACAGLAAVRQGKEV 375

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   ++ G  ++V ++  L+++YAKCG ++ A RIF      V N+  WN+MI G+  NG
Sbjct: 376 HCQYVRRGGWRDVIIESALVDLYAKCGCIDFAHRIFTKMT--VRNLITWNSMICGFAQNG 433

Query: 181 CFDKALGCFAEM--EGS-ANLNTLVNVLSACSNLALLETGKGVHCCIIKS 41
             ++AL  F EM  EG+  +  T + VL ACS+       KG+ C  +++
Sbjct: 434 WAEEALRIFDEMVKEGTKPDYITFIGVLFACSHTDREPLAKGILCYDVRA 483



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
 Frame = -2

Query: 511 IIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADVIKFG 332
           II   K+G    AL +   + +  + S     +A++ + C  +   N+G  IHA V+K G
Sbjct: 23  IIGFCKSGALLHALDILNSI-DSREISNKPFIYASLLQTCTKVVSFNHGLQIHAHVVKSG 81

Query: 331 FSKN--VEVQLIEMYAKCGGMEHATR-IFDNRNADVFNVQHWNAMIWGYVHNGCFDKALG 161
              +  V   L+ +Y K       TR +FD       +V  W +MI GYV      KAL 
Sbjct: 82  LETDRFVGNSLLALYFKLSTDFFETRRVFDGLYFR--DVISWTSMITGYVKGEKPKKALD 139

Query: 160 CFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSD 26
            F EM       N  TL  V+ AC++L  L  GK  HC I+  GF S+
Sbjct: 140 LFWEMLDVGVDPNAFTLSAVIKACTDLGTLMLGKCFHCVIMIRGFHSN 187


>ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
           gi|302142763|emb|CBI19966.3| unnamed protein product
           [Vitis vinifera]
          Length = 1048

 Score =  114 bits (286), Expect = 1e-23
 Identities = 72/180 (40%), Positives = 98/180 (54%), Gaps = 5/180 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V+WN +I  + K G   EA+  ++ M + G  S    T  +V  A   L  LNYG  +
Sbjct: 313 NVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRS-TLGSVLSAIASLEALNYGLLV 371

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           HA  IK G + NV V   LI MYAKC  ME A ++FD    D  N+  WNAM+ GY  NG
Sbjct: 372 HAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDA--LDERNLVLWNAMLGGYAQNG 429

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
              K +  F+EM G     +  T  ++LSAC+ L  LE G+ +H  IIK  F+ ++F+EN
Sbjct: 430 YASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVEN 489



 Score =  111 bits (277), Expect = 1e-22
 Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V WN ++   A+NG + + + L+ +MR  G   PD  T+ ++  AC  L CL  G  +
Sbjct: 414 NLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFW-PDEFTYTSILSACACLECLEMGRQL 472

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDN-RNADVFNVQHWNAMIWGYVHN 185
           H+ +IK  F  N  VE  L++MYAKCG +E A + F+  RN D  NV  WNA+I GYV  
Sbjct: 473 HSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRD--NVS-WNAIIVGYVQE 529

Query: 184 GCFDKALGCFAEM--EGSA-NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIF 20
              D+A   F  M  +G A +  +L ++LS C+NL  LE G+ VHC ++KSG  + ++
Sbjct: 530 EDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLY 587



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 5/168 (2%)
 Frame = -2

Query: 529  VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
            + W  +I  + +NG S+EAL LY++M    +  PD  TFA+V  AC  L  L  G  IH+
Sbjct: 720  ILWTAIISGHTQNGCSEEALQLYQEMHR-NNARPDQATFASVLRACSILASLGDGRMIHS 778

Query: 349  DVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
             +   G   +      +++MYAKCG M+ + ++F+   +   +V  WN+MI G+  NG  
Sbjct: 779  LIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSK-NDVISWNSMIVGFAKNGYA 837

Query: 175  DKALGCFAEMEGS---ANLNTLVNVLSACSNLALLETGKGVHCCIIKS 41
            + AL  F EM+ +    +  T + VL+ACS+   +  G+ +   ++ S
Sbjct: 838  ENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHS 885



 Score = 82.0 bits (201), Expect = 8e-14
 Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
 Frame = -2

Query: 535  NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
            + VSWN +I+   +  +  EA  ++R+M   G  +PD ++ A++   C +L  L  G+ +
Sbjct: 515  DNVSWNAIIVGYVQEEDEDEAFNMFRRMILDG-IAPDEVSLASILSGCANLQALEQGEQV 573

Query: 355  HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
            H  ++K G    +     LI+MY KCG +E A  +F    +   +V   NA+I GY  N 
Sbjct: 574  HCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSR--SVVSMNAIIAGYAQND 631

Query: 181  CFDKALGCFAEMEGSANLN----TLVNVLSACSNLALLETGKGVHCCIIKSG--FDSD 26
              + A+  F EM+ +  LN    T  ++L AC+    L  G+ +HC I K G  +D D
Sbjct: 632  LVE-AIDLFQEMQ-NEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGD 687



 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           ++WN+++   ++ G+ ++ +  +  ++  G  SP+  T+A V  +C  L  ++ G  +H 
Sbjct: 148 LAWNSVLSMYSRQGSLEQVIWCFGSLQNCG-VSPNQFTYAIVLSSCARLVDIDLGKQVHC 206

Query: 349 DVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            VIK GF  N   E  LI+MY+KCG +  A +IFD    D   V  W AMI GYV  G  
Sbjct: 207 GVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFD-AVVDPDTVS-WTAMIAGYVQVGLP 264

Query: 175 DKALGCFAEMEGSA---NLNTLVNVLSACSNLALLE 77
           ++AL  F +M+      +    V V++AC  L  L+
Sbjct: 265 EEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLD 300



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 5/120 (4%)
 Frame = -2

Query: 358 IHADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHN 185
           IHA  +KFGF     +   ++++YAKCG +E A + F+    +  ++  WN+++  Y   
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQ--LEKRDILAWNSVLSMYSRQ 160

Query: 184 GCFDKALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIE 14
           G  ++ + CF  ++    S N  T   VLS+C+ L  ++ GK VHC +IK GF+ + F E
Sbjct: 161 GSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE 220



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
 Frame = -2

Query: 529  VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
            VS N +I   A+N +  EA+ L+++M+  G  +P  +TFA++ +AC     LN G  IH 
Sbjct: 618  VSMNAIIAGYAQN-DLVEAIDLFQEMQNEG-LNPSEITFASLLDACTGPYKLNLGRQIHC 675

Query: 349  DVIKFGFSKNVE---VQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGC 179
             + K G   + +   V L+ MY        A  +F         +  W A+I G+  NGC
Sbjct: 676  LIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTIL-WTAIISGHTQNGC 734

Query: 178  FDKALGCFAEMEGS---ANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSD 26
             ++AL  + EM  +    +  T  +VL ACS LA L  G+ +H  I   G DSD
Sbjct: 735  SEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSD 788


>ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
           gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein
           [Arabidopsis thaliana] gi|300825685|gb|ADK35876.1|
           chloroplast vanilla cream 1 [Arabidopsis thaliana]
           gi|332191210|gb|AEE29331.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  114 bits (285), Expect = 1e-23
 Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N  SWN L+   AK G   EA+ LY +M  +G   PD+ TF  V   CG +  L  G  +
Sbjct: 159 NLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEV 218

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNR-NADVFNVQHWNAMIWGYVHN 185
           H  V+++G+  +++V   LI MY KCG ++ A  +FD     D+ +   WNAMI GY  N
Sbjct: 219 HVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS---WNAMISGYFEN 275

Query: 184 GCFDKALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIE 14
           G   + L  F  M G     +L TL +V+SAC  L     G+ +H  +I +GF  DI + 
Sbjct: 276 GMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVC 335

Query: 13  N 11
           N
Sbjct: 336 N 336



 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           +SWN +I    +NG   E L L+  MR +    PDL+T  +V  AC  LG    G  IHA
Sbjct: 263 ISWNAMISGYFENGMCHEGLELFFAMRGLS-VDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            VI  GF+ ++ V   L +MY   G    A ++F        ++  W  MI GY +N   
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERK--DIVSWTTMISGYEYNFLP 379

Query: 175 DKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           DKA+  +  M+  +   +  T+  VLSAC+ L  L+TG  +H   IK+   S + + N
Sbjct: 380 DKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVAN 437



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 61/178 (34%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSW T+I     N    +A+  YR M +     PD +T A V  AC  LG L+ G  +H 
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQ-DSVKPDEITVAAVLSACATLGDLDTGVELHK 422

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGY-VHNGC 179
             IK      V V   LI MY+KC  ++ A  IF   N    NV  W ++I G  ++N C
Sbjct: 423 LAIKARLISYVIVANNLINMYSKCKCIDKALDIF--HNIPRKNVISWTSIIAGLRLNNRC 480

Query: 178 FDKALGCFAEMEGSANLN--TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           F+ AL    +M+ +   N  TL   L+AC+ +  L  GK +H  ++++G   D F+ N
Sbjct: 481 FE-ALIFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN 537



 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 5/160 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N +SW ++I     N    EAL   R+M+      P+ +T      AC  +G L  G  I
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFLRQMKMT--LQPNAITLTAALAACARIGALMCGKEI 520

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           HA V++ G   +  +   L++MY +CG M  A   F+++  DV +   WN ++ GY   G
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTS---WNILLTGYSERG 577

Query: 181 CFDKALGCFAEMEGS---ANLNTLVNVLSACSNLALLETG 71
                +  F  M  S    +  T +++L  CS   ++  G
Sbjct: 578 QGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQG 617


>ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  114 bits (284), Expect = 2e-23
 Identities = 66/178 (37%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           + W ++I A  +N    EAL  +  M+      PD  TF TV  ACG+LG L  G  +HA
Sbjct: 228 ICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHA 287

Query: 349 DVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            VI  GF  NV V+  L++MY KCG +  + RIFD     + N   W+A++ GY  NG F
Sbjct: 288 KVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFD--RMPIKNSVSWSALLGGYCQNGDF 345

Query: 175 DKALGCFAEMEGSANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGNV 2
              +  F +ME   +L     +L  C+ LA +  GK VHC  I+ G   D+ +E+  V
Sbjct: 346 KSVIQIFRKME-KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALV 402



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSW+ L+    +NG+ K  + ++RKM ++     DL  F T+   C  L  +  G  +
Sbjct: 328 NSVSWSALLGGYCQNGDFKSVIQIFRKMEKV-----DLYCFGTILRTCAGLAAVRQGKEV 382

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   I+ G  ++V V+  L+++YAKCG +E+A  IFD     V N+  WN+MI G+  NG
Sbjct: 383 HCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFD--QMPVRNLITWNSMIGGFAQNG 440

Query: 181 CFDKALGCFAEM--EG-SANLNTLVNVLSACSNLALLETGK 68
             ++AL  F +M  EG   +  + + +L ACS+  L++ G+
Sbjct: 441 RGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGR 481



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
 Frame = -2

Query: 511 IIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADVIKFG 332
           I+   K+G    AL L + + + G+ S   + +A++ + C  +   N+G  IHA VIK G
Sbjct: 31  ILQLCKSGELSGALQLLKSI-DPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSG 89

Query: 331 --FSKNVEVQLIEMYAKCGGMEHATR-IFDNRNADVFNVQHWNAMIWGYVHNGCFDKALG 161
             F + V   L+ +Y K G     TR +FD     V +V  W +MI GYV  G    +L 
Sbjct: 90  LEFDRFVGNSLLTLYFKLGTDFPETRKVFDG--LFVKDVISWTSMISGYVRVGKPMNSLE 147

Query: 160 CFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFI 17
            F +M       N  TL  V+ ACS L  L+ G+  H  ++  GFDS+  I
Sbjct: 148 LFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVI 198


>emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  114 bits (284), Expect = 2e-23
 Identities = 66/178 (37%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           + W ++I A  +N    EAL  +  M+      PD  TF TV  ACG+LG L  G  +HA
Sbjct: 287 ICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHA 346

Query: 349 DVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            VI  GF  NV V+  L++MY KCG +  + RIFD     + N   W+A++ GY  NG F
Sbjct: 347 KVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFD--RMPIKNSVSWSALLGGYCQNGDF 404

Query: 175 DKALGCFAEMEGSANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGNV 2
              +  F +ME   +L     +L  C+ LA +  GK VHC  I+ G   D+ +E+  V
Sbjct: 405 KSVIQIFRKME-KVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALV 461



 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSW+ L+    +NG+ K  + ++RKM ++     DL  F T+   C  L  +  G  +
Sbjct: 387 NSVSWSALLGGYCQNGDFKSVIQIFRKMEKV-----DLYCFGTILRTCAGLAAVRQGKEV 441

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   I+ G  ++V V+  L+++YAKCG +E+A  IFD     V N+  WN+MI G+  NG
Sbjct: 442 HCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFD--QMPVRNLITWNSMIGGFAQNG 499

Query: 181 CFDKALGCFAEM--EG-SANLNTLVNVLSACSNLALLETGK 68
             ++AL  F +M  EG   +  + + +L ACS+  L++ G+
Sbjct: 500 RGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGR 540



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
 Frame = -2

Query: 511 IIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADVIKFG 332
           I+   K+G    AL L + + + G+ S   + +A++ + C  +   N+G  IHA VIK G
Sbjct: 90  ILQLCKSGELSGALQLLKSI-DPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSG 148

Query: 331 --FSKNVEVQLIEMYAKCGGMEHATR-IFDNRNADVFNVQHWNAMIWGYVHNGCFDKALG 161
             F + V   L+ +Y K G     TR +FD     V +V  W +MI GYV  G    +L 
Sbjct: 149 LEFDRFVGNSLLTLYFKLGTDFPETRKVFDG--LFVKDVISWTSMISGYVRVGKPMNSLE 206

Query: 160 CFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFI 17
            F +M       N  TL  V+ ACS L  L+ G+  H  ++  GFDS+  I
Sbjct: 207 LFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVI 257


>ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335950|gb|EFH66367.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 866

 Score =  113 bits (283), Expect = 2e-23
 Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N  SWN L+   AK G   EA+ LY +M  +G   PD+ TF  V   CG +  L  G  +
Sbjct: 159 NLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREV 218

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNR-NADVFNVQHWNAMIWGYVHN 185
           H  V+++G+  +++V   LI MY KCG ++ A  +FD     D+ +   WNAMI GY  N
Sbjct: 219 HVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS---WNAMISGYFEN 275

Query: 184 GCFDKALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIE 14
           G   + L  F  M G     +L TL +V+SAC  L     G+ +H  +I +GF  DI + 
Sbjct: 276 GMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVC 335

Query: 13  N 11
           N
Sbjct: 336 N 336



 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           +SWN +I    +NG   E L L+  MR +    PDL+T  +V  AC  LG    G  IHA
Sbjct: 263 ISWNAMISGYFENGMGHEGLKLFFAMRGLS-VDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            VI  GF+ ++ V   L +MY   G    A ++F     D  ++  W  MI GY +N   
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRM--DCKDIVSWTTMISGYEYNFLP 379

Query: 175 DKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           +KA+  +  M+  +   +  T+  VLSAC+ L  L+TG  +H   IK+   S + + N
Sbjct: 380 EKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVAN 437



 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 5/178 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSW T+I     N   ++A+  YR M +     PD +T A V  AC  LG L+ G  +H 
Sbjct: 364 VSWTTMISGYEYNFLPEKAIDTYRMMDQ-DSVKPDEITVAAVLSACATLGDLDTGVELHK 422

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGY-VHNGC 179
             IK      V V   LI MY+KC  ++ A  IF   N    NV  W ++I G  ++N C
Sbjct: 423 LAIKARLISYVIVANNLINMYSKCKCIDKALDIF--HNIPRKNVISWTSIIAGLRLNNRC 480

Query: 178 FDKALGCFAEMEGSANLN--TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           F+ AL  F +M+ +   N  TL   L+AC+ +  L  GK +H  ++++G   D F+ N
Sbjct: 481 FE-ALIFFRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN 537



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N +SW ++I     N    EAL  +R+M+      P+ +T      AC  +G L  G  I
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFFRQMKMT--LQPNAITLTAALAACARIGALMCGKEI 520

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           HA V++ G   +  +   L++MY +CG M  A   F+++  D   V  WN ++ GY   G
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQKKD---VSSWNILLTGYSERG 577

Query: 181 CFDKALGCFAEMEGS---ANLNTLVNVLSACSNLALLETG 71
                +  F  M  +    +  T +++L  C    ++  G
Sbjct: 578 QGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQG 617


>ref|XP_006306315.1| hypothetical protein CARUB_v10012185mg [Capsella rubella]
           gi|482575026|gb|EOA39213.1| hypothetical protein
           CARUB_v10012185mg [Capsella rubella]
          Length = 866

 Score =  113 bits (282), Expect = 3e-23
 Identities = 66/181 (36%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N  SWN L+   AK G   EA+ LY +M  +G   PD+ TF  V   CG +  L  G  +
Sbjct: 159 NLFSWNVLVGGYAKQGYLDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREV 218

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNR-NADVFNVQHWNAMIWGYVHN 185
           H  V+++G+  +++V   LI MY KCG ++ A  +FD     D+ +   WNAMI GY  N
Sbjct: 219 HVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS---WNAMISGYFEN 275

Query: 184 GCFDKALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIE 14
           G   + L  F  M G     +L T+ +V+SAC  L     G+ +H  +I +GF  DI + 
Sbjct: 276 GMCYEGLELFFAMRGLSVDPDLMTMTSVISACELLGAGRLGRDIHAYVISTGFAVDISVC 335

Query: 13  N 11
           N
Sbjct: 336 N 336



 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 5/178 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           +SWN +I    +NG   E L L+  MR +    PDL+T  +V  AC  LG    G  IHA
Sbjct: 263 ISWNAMISGYFENGMCYEGLELFFAMRGLS-VDPDLMTMTSVISACELLGAGRLGRDIHA 321

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
            VI  GF+ ++ V   L +MY   G    A ++F        ++  W  MI GY +N   
Sbjct: 322 YVISTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERK--DIVSWTTMISGYEYNFLP 379

Query: 175 DKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           +KA+  + +M+  +   +  T+  VLSAC+ L  L+TG  +H   IK+   S + + N
Sbjct: 380 EKAIDTYRKMDQDSVKPDEITVAAVLSACATLGDLDTGVEIHKLAIKARLISYVIVAN 437



 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 64/178 (35%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSW T+I     N   ++A+  YRKM +     PD +T A V  AC  LG L+ G  IH 
Sbjct: 364 VSWTTMISGYEYNFLPEKAIDTYRKMDQ-DSVKPDEITVAAVLSACATLGDLDTGVEIHK 422

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGY-VHNGC 179
             IK      V V   LI MY+KC  ++ A  IF   N    NV  W ++I G  ++N C
Sbjct: 423 LAIKARLISYVIVANNLINMYSKCKCIDKALDIF--HNIPRKNVISWTSIIAGLRLNNRC 480

Query: 178 FDKALGCFAEMEGSANLN--TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           F+ AL  F +M+ +   N  TL   L+AC+ +  L  GK +H  ++++G   D F+ N
Sbjct: 481 FE-ALIFFRQMKMALQPNAITLTAALAACARIGALMCGKEIHAHLLRTGVGLDDFLPN 537



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N +SW ++I     N    EAL  +R+M+      P+ +T      AC  +G L  G  I
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFFRQMKMA--LQPNAITLTAALAACARIGALMCGKEI 520

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           HA +++ G   +  +   L++MY +CG M  A   F+++  D   V  WN ++ GY   G
Sbjct: 521 HAHLLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQKKD---VSSWNILLTGYSERG 577

Query: 181 CFDKALGCFAEMEGS---ANLNTLVNVLSACSNLALLETG 71
                +  F +M  S    +  T +++L  CS   ++  G
Sbjct: 578 QGSVVVELFDKMVKSRVRPDEITFISLLCGCSKSQMVREG 617


>ref|XP_004308660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Fragaria vesca subsp. vesca]
          Length = 706

 Score =  113 bits (282), Expect = 3e-23
 Identities = 67/180 (37%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N ++W+ +I    ++G+S +AL L+R M   G   P   TF  V  ACG +G L  G  +
Sbjct: 281 NSITWSAMICGFGQSGDSHKALDLFRDMHFSG-IMPSQYTFVGVINACGDIGALREGQQV 339

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVF----NVQHWNAMIWGY 194
           H+ ++K GF   V +   L++MYAKCG      R+ D RN   +    +V  W +MI GY
Sbjct: 340 HSFLLKMGFEGQVYIMSALVDMYAKCG------RVADARNGFEYIKEPDVVLWTSMIGGY 393

Query: 193 VHNGCFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDI 23
           V NG ++ ALG +  M       N  T+ +VL ACSNL+  E GK +H   IK GF  ++
Sbjct: 394 VQNGEYEAALGLYCRMHKEGIMPNKLTMASVLKACSNLSSFEQGKQIHARTIKYGFSLEV 453



 Score = 99.4 bits (246), Expect = 5e-19
 Identities = 64/158 (40%), Positives = 85/158 (53%), Gaps = 5/158 (3%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           V W ++I    +NG  + AL LY +M + G   P+ LT A+V +AC +L     G  IHA
Sbjct: 384 VLWTSMIGGYVQNGEYEAALGLYCRMHKEG-IMPNKLTMASVLKACSNLSSFEQGKQIHA 442

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
             IK+GFS  V +   L  MYAKCG +E    +F  R   V +V  WN +I G   NG  
Sbjct: 443 RTIKYGFSLEVPIGSALSTMYAKCGNLEDGNLVF--RRMPVRDVVAWNGIISGLSQNGRG 500

Query: 175 DKALGCFAEM---EGSANLNTLVNVLSACSNLALLETG 71
            +AL  F EM   E   +  T VNVLSACS++  +E G
Sbjct: 501 TEALDLFEEMRLGETKPDYVTFVNVLSACSHMGFVERG 538



 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDL-LTFATVSEACGHLGCLNYGDG 359
           N VSW T+I   A    + EA+ ++R MR   +   +      +V  A      ++ G  
Sbjct: 178 NSVSWATMISGYAMQRMAGEAVEVFRLMRRSEENEGENEFVLTSVVSALAVREFVDTGKQ 237

Query: 358 IHADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHN 185
           IH   +K G    V V   L+ MY KCG ++ A R F+       N   W+AMI G+  +
Sbjct: 238 IHCVAVKNGLMSFVSVGNALVTMYGKCGSLDDALRTFELSGDK--NSITWSAMICGFGQS 295

Query: 184 GCFDKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFI 17
           G   KAL  F +M  S  +    T V V++AC ++  L  G+ VH  ++K GF+  ++I
Sbjct: 296 GDSHKALDLFRDMHFSGIMPSQYTFVGVINACGDIGALREGQQVHSFLLKMGFEGQVYI 354



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
 Frame = -2

Query: 529 VSWNTLIIA-NAKNGNSKEALALYRKMREIGDCSPDLLTFATV-----SEACGHLGCLNY 368
           VS+N LI A +  + +S   + L+R+MR   + SP+  TFA V     SEA   LG    
Sbjct: 77  VSFNNLINACSHHHQHSSLVMRLFRRMRA-ENTSPNSHTFAGVFTAASSEASDVLG---- 131

Query: 367 GDGIHADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGY 194
           G  +HA VIK   S +V V   L+ MY K G +  A ++FD  +    N   W  MI GY
Sbjct: 132 GRHVHAVVIKDVRSFDVFVGSCLVNMYCKMGLVGDARKVFDRMSER--NSVSWATMISGY 189

Query: 193 VHNGCFDKALGCFAEMEGSA-----NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDS 29
                  +A+  F  M  S      N   L +V+SA +    ++TGK +HC  +K+G  S
Sbjct: 190 AMQRMAGEAVEVFRLMRRSEENEGENEFVLTSVVSALAVREFVDTGKQIHCVAVKNGLMS 249

Query: 28  DIFIENGNV 2
            + + N  V
Sbjct: 250 FVSVGNALV 258


>ref|XP_003518395.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like isoform X1 [Glycine max]
          Length = 615

 Score =  112 bits (281), Expect = 4e-23
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 5/178 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           + VSWN++I   AK G ++EA+ ++R+M       PD ++  ++  ACG LG L  G  +
Sbjct: 188 DSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWV 247

Query: 355 HADVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
              V++ G + N  +   LI MYAKCG +E A RIFD   A   +V  WNA+I GY  NG
Sbjct: 248 EGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAAR--DVITWNAVISGYAQNG 305

Query: 181 CFDKALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFI 17
             D+A+  F  M+    +AN  TL  VLSAC+ +  L+ GK +     + GF  DIF+
Sbjct: 306 MADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFV 363



 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 8/161 (4%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDC-SPDLLTFATVSEACGHLGCLNYGDGIH 353
           ++WN +I   A+NG + EA+ L+  M+E  DC + + +T   V  AC  +G L+ G  I 
Sbjct: 292 ITWNAVISGYAQNGMADEAILLFHGMKE--DCVTANKITLTAVLSACATIGALDLGKQID 349

Query: 352 ADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGC 179
               + GF  ++ V   LI+MYAK G +++A R+F  ++    N   WNAMI     +G 
Sbjct: 350 EYASQRGFQHDIFVATALIDMYAKSGSLDNAQRVF--KDMPQKNEASWNAMISALAAHGK 407

Query: 178 FDKALGCFAEME---GSANLN--TLVNVLSACSNLALLETG 71
             +AL  F  M    G A  N  T V +LSAC +  L++ G
Sbjct: 408 AKEALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEG 448



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNG-NSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDG 359
           N+ ++N +I A      N   AL+L+ +M  +   +PD  TF     +C +L  L++   
Sbjct: 86  NDYAFNIMIRALTTTWHNYPLALSLFHRMMSLS-LTPDNFTFPFFFLSCANLASLSHACA 144

Query: 358 IHADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDN-RNADVFNVQHWNAMIWGYVH 188
            H+ + K     +      LI  YA+CG +  A ++FD   + D  +   WN+MI GY  
Sbjct: 145 AHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVS---WNSMIAGYAK 201

Query: 187 NGCFDKALGCFAEMEGSANLN----TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIF 20
            GC  +A+  F EM           +LV++L AC  L  LE G+ V   +++ G   + +
Sbjct: 202 AGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSY 261

Query: 19  I 17
           I
Sbjct: 262 I 262


>ref|XP_002307479.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550339428|gb|EEE94475.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 1026

 Score =  112 bits (281), Expect = 4e-23
 Identities = 70/183 (38%), Positives = 100/183 (54%), Gaps = 5/183 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V+WN +I  +AK G   EA+  ++ MR+ G  S    T  +V  A   L  L++G  +
Sbjct: 291 NVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRS-TLGSVLSAIASLAALDFGLLV 349

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           HA+ +K G   NV V   L+ MYAKCG ME A ++FD  N    NV  WNAM+ GYV NG
Sbjct: 350 HAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQ--NVVLWNAMLGGYVQNG 407

Query: 181 CFDKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
             ++ +  F  M+         T  ++LSAC+ L  L+ G  +H  IIK+ F S++F+ N
Sbjct: 408 YANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGN 467

Query: 10  GNV 2
             V
Sbjct: 468 ALV 470



 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V WN ++    +NG + E + L+  M+  G   PD  T++++  AC  L  L+ G  +
Sbjct: 392 NVVLWNAMLGGYVQNGYANEVMELFFNMKSCG-FYPDDFTYSSILSACACLKYLDLGHQL 450

Query: 355 HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDN-RNADVFNVQHWNAMIWGYVHN 185
           H+ +IK  F+ N+ V   L++MYAK G +E A + F+  RN D  NV  WN +I GYV  
Sbjct: 451 HSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRD--NVS-WNVIIVGYVQE 507

Query: 184 GCFDKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIF 20
               +A   F  M     L    +L ++LSAC+++  LE GK VHC  +K+G ++ ++
Sbjct: 508 EDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLY 565



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
 Frame = -2

Query: 529  VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
            V W  +I   ++N  S  AL LY++MR   +  PD  TF +   AC  +  +  G   H+
Sbjct: 698  VVWTAMISGLSQNDCSVVALQLYKEMRSC-NVLPDQATFVSALRACAVVSSIKDGTETHS 756

Query: 349  DVIKFGFSKN--VEVQLIEMYAKCGGMEHATRIFD--NRNADVFNVQHWNAMIWGYVHNG 182
             +   GF  +      L++MYAKCG ++ + ++F   +R  DV +   WN+MI G+  NG
Sbjct: 757  LIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVIS---WNSMIVGFAKNG 813

Query: 181  CFDKALGCFAEMEGS---ANLNTLVNVLSACSNLALLETGK 68
              + AL  F EM+ S    +  T + VL+ACS+   +  G+
Sbjct: 814  YAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGR 854



 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
 Frame = -2

Query: 535  NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
            + VSWN +I+   +  +  EA  L+R+M  +G   PD ++ A++  AC  +  L  G  +
Sbjct: 493  DNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLG-ILPDEVSLASILSACASVRGLEQGKQV 551

Query: 355  HADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
            H   +K G    +     LI+MYAKCG ++ A +I         +V   NA+I GY    
Sbjct: 552  HCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKIL--ACMPERSVVSMNALIAGYAQIN 609

Query: 181  CFDKALGCFAEM--EG-SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSD 26
              ++A+  F +M  EG ++   T  ++L AC     L  G+ +HC I+K G   D
Sbjct: 610  -LEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHCLILKMGLQLD 663



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 6/174 (3%)
 Frame = -2

Query: 529  VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
            VS N LI   A+  N ++A+ L+R M   G  S ++ TFA++ +AC     LN G  IH 
Sbjct: 596  VSMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEI-TFASLLDACHEQQKLNLGRQIHC 653

Query: 349  DVIKFGFSKNVE---VQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGC 179
             ++K G   + E   V L+ MY        A+ +F   +     V  W AMI G   N C
Sbjct: 654  LILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVV-WTAMISGLSQNDC 712

Query: 178  FDKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSGFDSD 26
               AL  + EM     L    T V+ L AC+ ++ ++ G   H  I  +GFDSD
Sbjct: 713  SVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSD 766



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           ++WN+++  ++K G     +  +  +   G   P+  TFA V  +C  L  +  G  +H 
Sbjct: 126 LAWNSILSMHSKQGFPHLVVKYFGLLWNSG-VWPNEFTFAIVLSSCARLEMVKCGRQVHC 184

Query: 349 DVIKFGFS--KNVEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
           +V+K GF      E  LI MYAKC  +  A  IFD   A   +   W +MI GY+  G  
Sbjct: 185 NVVKMGFESISYCEGALIGMYAKCNFLTDARSIFD--GAVELDKVSWTSMIGGYIKVGLP 242

Query: 175 DKALGCFAEME 143
           ++A+  F EME
Sbjct: 243 EEAVKVFQEME 253



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
 Frame = -2

Query: 358 IHADVIKFGF-SKNVEVQLI-EMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHN 185
           IHA  +K GF SK V   +I ++YAKC  +++A R F  +  +  ++  WN+++  +   
Sbjct: 81  IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAF--KQLEDKDILAWNSILSMHSKQ 138

Query: 184 GCFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIE 14
           G     +  F  +  S    N  T   VLS+C+ L +++ G+ VHC ++K GF+S  + E
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198


>ref|XP_006853510.1| hypothetical protein AMTR_s00032p00219990 [Amborella trichopoda]
           gi|548857163|gb|ERN14977.1| hypothetical protein
           AMTR_s00032p00219990 [Amborella trichopoda]
          Length = 662

 Score =  112 bits (280), Expect = 5e-23
 Identities = 66/179 (36%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           VSWNT++ A A+NG  ++ALA+ R M  +    PD +T A+V  AC   G LN+G  IHA
Sbjct: 312 VSWNTMVAAYAQNGRFEDALAMLRSMAGV---KPDGVTLASVLPACAQTGALNHGIEIHA 368

Query: 349 DVIK---FGFSKNVEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGC 179
             ++      +  V   L++MY  CG ++ A  +F+      +++  WNA+I GY  NG 
Sbjct: 369 YAMRNDDLFLNAYVGSALVDMYCNCGRVQEALHVFEM--VSDWSIALWNAVITGYAQNGF 426

Query: 178 FDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
             +AL  F  ME S    N  T+V+VL AC+       GK +H  I+K G+  D F++N
Sbjct: 427 DIEALQLFVRMEPSGLKPNPTTMVSVLPACARSGEFHQGKDMHSYIVKRGWQGDKFVQN 485



 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 5/178 (2%)
 Frame = -2

Query: 523 WNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADV 344
           WN +I   A+NG   EAL L+ +M   G   P+  T  +V  AC   G  + G  +H+ +
Sbjct: 414 WNAVITGYAQNGFDIEALQLFVRMEPSG-LKPNPTTMVSVLPACARSGEFHQGKDMHSYI 472

Query: 343 IKFGFS--KNVEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFDK 170
           +K G+   K V+  L++MYA+ G +  A  IF    +   +   WN MI G+V     D+
Sbjct: 473 VKRGWQGDKFVQNALLDMYARGGQLRTARTIFSGMASK--DSVSWNTMITGFVLAELHDE 530

Query: 169 ALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENGN 5
           ALG   EM      +N  TL+ VL AC+ L+ L  G+ +H   I++G +++ F   G+
Sbjct: 531 ALGLLREMHHMGYRSNSITLMTVLPACAALSALHKGREIHAYAIRNGLEAEAFTRKGD 588



 Score = 79.0 bits (193), Expect = 7e-13
 Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 6/177 (3%)
 Frame = -2

Query: 523 WNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADV 344
           W  +I    ++G  KEAL LY  M E G  + + + F  + +A   L  L  G+  HA  
Sbjct: 111 WTEMIRGYVRSGLFKEALFLYIVMLEAGPFTDNFI-FPAILKAASGLKGLEIGEQAHAQA 169

Query: 343 IKFGFSKN---VEVQLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFD 173
           +K G+S++   V   ++ MY KCG +E A R+FD       +   WN+MI        ++
Sbjct: 170 VKTGYSESSVTVGNTILTMYGKCGLVEKAKRVFDKMPER--DQVSWNSMIGALCQGEQWE 227

Query: 172 KALGCFAEMEG---SANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
           +AL  F  M     S +  +L+++L A + L+LL   +  HC I+++G D   F  N
Sbjct: 228 RALQEFQSMVWGGVSPSSFSLISLLQASAQLSLLSHCQEAHCYILRTGLDDQTFTTN 284


>ref|XP_004292257.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Fragaria vesca subsp. vesca]
          Length = 415

 Score =  112 bits (280), Expect = 5e-23
 Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N ++W+ +I   A++G+S +AL L+R M    +      TF  V  ACG +G L  G  +
Sbjct: 121 NSITWSAMICGLAQSGDSHKALDLFRDMH-FSEIMSSQYTFVRVINACGGIGALKEGQQV 179

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H+ ++K GF + V +   ++EMYA CG +  A   F+       +V  W +MI GYV N 
Sbjct: 180 HSFLLKMGFEEQVYIMSAMVEMYANCGRVGDACNGFEYLKEP--DVVLWTSMIGGYVQNK 237

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDI 23
            ++ ALG +  M       N  T+ +VL+ACSNL+  E GK +H C IK GF  ++
Sbjct: 238 EYEAALGLYCRMHKEGIMPNKLTMASVLNACSNLSSFEQGKQIHACTIKYGFSLEV 293



 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
 Frame = -2

Query: 535 NEVSWNTLIIANAK---NGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYG 365
           N VSW T+I   A     G + E   L R+  E    +  +LT      A      ++ G
Sbjct: 18  NSVSWATMISGYAMLHMAGKAVEVFGLMRRSEENEGENEFVLTSVVSMLAVREF--VDTG 75

Query: 364 DGIHADVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYV 191
             IH   +K G    V V   L+ MY KCG ++ A R F+       N   W+AMI G  
Sbjct: 76  KQIHCLAVKNGLMSFVSVGNALVTMYGKCGSLDDALRTFELSRDK--NSITWSAMICGLA 133

Query: 190 HNGCFDKALGCFAEMEGSANLN---TLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIF 20
            +G   KAL  F +M  S  ++   T V V++AC  +  L+ G+ VH  ++K GF+  ++
Sbjct: 134 QSGDSHKALDLFRDMHFSEIMSSQYTFVRVINACGGIGALKEGQQVHSFLLKMGFEEQVY 193

Query: 19  IENGNV 2
           I +  V
Sbjct: 194 IMSAMV 199



 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           V W ++I    +N   + AL LY +M + G   P+ LT A+V  AC +L     G  IHA
Sbjct: 224 VLWTSMIGGYVQNKEYEAALGLYCRMHKEG-IMPNKLTMASVLNACSNLSSFEQGKQIHA 282

Query: 349 DVIKFGFSKNVEV--QLIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
             IK+GFS  V +   L  MYAKCG  E    +F  R   V +V  WN +I G    G F
Sbjct: 283 CTIKYGFSLEVPIGSALSTMYAKCGNSEDGNLVF--RRMPVRDVVAWNGIISGLGGPGGF 340


>ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana] gi|6850884|emb|CAB71047.1| putative protein
           [Arabidopsis thaliana] gi|332646643|gb|AEE80164.1|
           pentatricopeptide (PPR) repeat-containing protein
           [Arabidopsis thaliana]
          Length = 783

 Score =  112 bits (280), Expect = 5e-23
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 5/180 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N +SWN LI    K+G+  EA  L+ +M+  G   P+  T  +V   C  L  L  G+ I
Sbjct: 89  NTISWNALISGYCKSGSKVEAFNLFWEMQSDG-IKPNEYTLGSVLRMCTSLVLLLRGEQI 147

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   IK GF  +V V   L+ MYA+C  +  A  +F+    +  NV  W +M+ GY  NG
Sbjct: 148 HGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVT-WTSMLTGYSQNG 206

Query: 181 CFDKALGCFAEM--EGS-ANLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
              KA+ CF ++  EG+ +N  T  +VL+AC++++    G  VHCCI+KSGF ++I++++
Sbjct: 207 FAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQS 266



 Score = 89.0 bits (219), Expect = 6e-16
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 7/185 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N V+W +++   ++NG + +A+  +R +R  G+ S +  TF +V  AC  +     G  +
Sbjct: 191 NNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQS-NQYTFPSVLTACASVSACRVGVQV 249

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H  ++K GF  N+ VQ  LI+MYAKC  ME A  + +    D  +V  WN+MI G V  G
Sbjct: 250 HCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVD--DVVSWNSMIVGCVRQG 307

Query: 181 CFDKALGCFAEM-EGSANLN--TLVNVLSACSNLALLE--TGKGVHCCIIKSGFDSDIFI 17
              +AL  F  M E    ++  T+ ++L+ C  L+  E       HC I+K+G+ +   +
Sbjct: 308 LIGEALSMFGRMHERDMKIDDFTIPSILN-CFALSRTEMKIASSAHCLIVKTGYATYKLV 366

Query: 16  ENGNV 2
            N  V
Sbjct: 367 NNALV 371



 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGC--LNYGDGI 356
           VSWN++I+   + G   EAL+++ +M E  D   D  T  ++   C  L    +      
Sbjct: 294 VSWNSMIVGCVRQGLIGEALSMFGRMHE-RDMKIDDFTIPSILN-CFALSRTEMKIASSA 351

Query: 355 HADVIKFGFS--KNVEVQLIEMYAKCGGMEHATRIFDNR-NADVFNVQHWNAMIWGYVHN 185
           H  ++K G++  K V   L++MYAK G M+ A ++F+     DV +   W A++ G  HN
Sbjct: 352 HCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVIS---WTALVTGNTHN 408

Query: 184 GCFDKALGCFAEME-GSANLNTLV--NVLSACSNLALLETGKGVHCCIIKSGFDSDIFIE 14
           G +D+AL  F  M  G    + +V  +VLSA + L LLE G+ VH   IKSGF S + + 
Sbjct: 409 GSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVN 468

Query: 13  NGNV 2
           N  V
Sbjct: 469 NSLV 472



 Score = 82.8 bits (203), Expect = 5e-14
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
 Frame = -2

Query: 529 VSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHA 350
           +SW  L+  N  NG+  EAL L+  MR +G  +PD +  A+V  A   L  L +G  +H 
Sbjct: 396 ISWTALVTGNTHNGSYDEALKLFCNMR-VGGITPDKIVTASVLSASAELTLLEFGQQVHG 454

Query: 349 DVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCF 176
           + IK GF  ++ V   L+ MY KCG +E A  IF+  + ++ ++  W  +I GY  NG  
Sbjct: 455 NYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFN--SMEIRDLITWTCLIVGYAKNGLL 512

Query: 175 DKALGCFAEM 146
           + A   F  M
Sbjct: 513 EDAQRYFDSM 522



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
 Frame = -2

Query: 307 LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFDKALGCFAEMEGSA-- 134
           +I  Y+    +  A ++F  R+  V N   WNA+I GY  +G   +A   F EM+     
Sbjct: 65  MIVAYSNSRRLSDAEKLF--RSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIK 122

Query: 133 -NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIENG 8
            N  TL +VL  C++L LL  G+ +H   IK+GFD D+ + NG
Sbjct: 123 PNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNG 165


>ref|XP_004305327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Fragaria vesca subsp. vesca]
          Length = 518

 Score =  112 bits (279), Expect = 7e-23
 Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 5/176 (2%)
 Frame = -2

Query: 523 WNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGIHADV 344
           WNTLI   A  G   EA+ LYRKM + G  SPD  TF  V  +C     L  G  +H ++
Sbjct: 19  WNTLIRGYADRGPCHEAIFLYRKMHQSG-FSPDNYTFPFVVRSCAVQSALREGTEVHCNI 77

Query: 343 IKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNGCFDK 170
           IK GFS +V VQ  L+ MYA+ G   ++  +F+     V N+  W AMI GYV NG + +
Sbjct: 78  IKNGFSSDVFVQSSLVSMYAQNGETLNSELVFNKMV--VRNIVSWTAMIAGYVKNGFYKE 135

Query: 169 ALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
            L    +M  S    N+ TLV++L AC++L  L+ G  +H   +K GFDSD+ + N
Sbjct: 136 GLTVLRDMVASGSQPNVVTLVSILPACASLEFLDLGNLIHGHGVKVGFDSDMSLMN 191



 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 5/180 (2%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSW  +I    KNG  KE L + R M   G   P+++T  ++  AC  L  L+ G+ I
Sbjct: 116 NIVSWTAMIAGYVKNGFYKEGLTVLRDMVASGS-QPNVVTLVSILPACASLEFLDLGNLI 174

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H   +K GF  ++ +   LI  Y KC  +E A  +FD     V N+  WNAMI  Y  N 
Sbjct: 175 HGHGVKVGFDSDMSLMNALIAFYGKCRNLETAKSLFDG--LVVRNLVSWNAMIAAYEQNK 232

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGKGVHCCIIKSGFDSDIFIEN 11
               A+  F  M+      +  T+V+V+SAC++   L TG  +H  + + GF +++ + N
Sbjct: 233 AGMHAIKLFCRMQNENVEYDYITIVSVISACASSGALNTGIWLHELVKRKGFGTNVSVTN 292



 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 5/161 (3%)
 Frame = -2

Query: 535 NEVSWNTLIIANAKNGNSKEALALYRKMREIGDCSPDLLTFATVSEACGHLGCLNYGDGI 356
           N VSWN +I A  +N     A+ L+ +M+   +   D +T  +V  AC   G LN G  +
Sbjct: 217 NLVSWNAMIAAYEQNKAGMHAIKLFCRMQN-ENVEYDYITIVSVISACASSGALNTGIWL 275

Query: 355 HADVIKFGFSKNVEVQ--LIEMYAKCGGMEHATRIFDNRNADVFNVQHWNAMIWGYVHNG 182
           H  V + GF  NV V   LI+MYAKCG ++ A  +F  +     +V  W ++I     +G
Sbjct: 276 HELVKRKGFGTNVSVTNALIDMYAKCGNIDLAKDVF--QKLPHKSVVSWTSIIGACASHG 333

Query: 181 CFDKALGCFAEMEGSA---NLNTLVNVLSACSNLALLETGK 68
             D AL  F+ M+      N  T + VLSAC +  L++ G+
Sbjct: 334 HGDDALMFFSMMKEKGIKPNNFTFIAVLSACRHSGLVDEGR 374