BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00029065
         (378 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group] g...   115   5e-24
gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indi...   115   5e-24
ref|XP_006644208.1| PREDICTED: pentatricopeptide repeat-containi...   115   6e-24
gb|EMT24513.1| hypothetical protein F775_06744 [Aegilops tauschii]    111   9e-23
gb|EMS49071.1| hypothetical protein TRIUR3_09168 [Triticum urartu]    111   9e-23
ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containi...   110   2e-22
dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]    110   2e-22
ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [S...   110   3e-22
ref|XP_004956188.1| PREDICTED: pentatricopeptide repeat-containi...   109   3e-22
gb|EXB65620.1| hypothetical protein L484_025886 [Morus notabilis]     107   2e-21
ref|NP_001147833.1| GTP binding protein [Zea mays] gi|195614010|...   107   2e-21
ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   103   2e-20
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi...   103   2e-20
gb|EOY16398.1| Tetratricopeptide repeat (TPR)-like superfamily p...   102   4e-20
ref|XP_006301167.1| hypothetical protein CARUB_v10021564mg, part...   100   2e-19
gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thal...   100   3e-19
ref|NP_177860.2| pentatricopeptide repeat-containing protein [Ar...   100   3e-19
ref|XP_002889139.1| pentatricopeptide repeat-containing protein ...    99   8e-19
ref|XP_002315895.2| hypothetical protein POPTR_0010s12490g [Popu...    98   1e-18
ref|XP_004298459.1| PREDICTED: pentatricopeptide repeat-containi...    98   1e-18

>ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
           gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza
           sativa Japonica Group] gi|125570544|gb|EAZ12059.1|
           hypothetical protein OsJ_01942 [Oryza sativa Japonica
           Group]
          Length = 540

 Score =  115 bits (289), Expect = 5e-24
 Identities = 54/124 (43%), Positives = 80/124 (64%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS+  LDEA++ F   +  G   ++PT N++I A CR  +   A+ ++D
Sbjct: 329 PHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVD 388

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL+HL++ +  EEA ++F RM + GCEP+L   TMM  MF S E
Sbjct: 389 EMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNE 448

Query: 12  NPDM 1
             DM
Sbjct: 449 RVDM 452



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAY 205
           IGP+   Y I+++       ++EA  +F +MER+GC  +L T+  ++   C  +++  A 
Sbjct: 395 IGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMAL 454

Query: 204 WVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEP 61
            V  +M+E GV P +  ++ +++ L  ++  EEA   F  M+ KG  P
Sbjct: 455 KVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRP 502


>gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  115 bits (289), Expect = 5e-24
 Identities = 54/124 (43%), Positives = 80/124 (64%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS+  LDEA++ F   +  G   ++PT N++I A CR  +   A+ ++D
Sbjct: 329 PHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVD 388

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL+HL++ +  EEA ++F RM + GCEP+L   TMM  MF S E
Sbjct: 389 EMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNE 448

Query: 12  NPDM 1
             DM
Sbjct: 449 RVDM 452



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAY 205
           IGP+   Y I+++       ++EA  +F +MER+GC  +L T+  ++   C  +++  A 
Sbjct: 395 IGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMAL 454

Query: 204 WVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEP 61
            V  +M+E GV P +  ++ +++ L  D+  EEA   F  M+ KG  P
Sbjct: 455 KVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRP 502


>ref|XP_006644208.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Oryza brachyantha]
          Length = 539

 Score =  115 bits (288), Expect = 6e-24
 Identities = 55/124 (44%), Positives = 76/124 (61%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   +  G   ++PT N++I A CRV K   A+ ++D
Sbjct: 328 PHIYCMLINGLGSAGRLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRVSKFSHAFRMVD 387

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL+HL++ +  EEA  +F  M   GCEP L   TMM  MF S E
Sbjct: 388 EMRKSGIGPNARTYDIILNHLIKSEKIEEAYKLFQGMETDGCEPQLNTYTMMVGMFCSNE 447

Query: 12  NPDM 1
             DM
Sbjct: 448 RVDM 451


>gb|EMT24513.1| hypothetical protein F775_06744 [Aegilops tauschii]
          Length = 539

 Score =  111 bits (278), Expect = 9e-23
 Identities = 54/124 (43%), Positives = 75/124 (60%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   +  G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 328 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRASKFQHAFKMVD 387

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL HL++    EEA +VF  M K GCEP L   TMM  MF S E
Sbjct: 388 EMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMGKDGCEPQLNTYTMMVSMFCSNE 447

Query: 12  NPDM 1
             D+
Sbjct: 448 RVDV 451



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAY 205
           IGP+   Y I++H       ++EA  VF  M ++GC   L T+  ++   C  +++  A 
Sbjct: 394 IGPNSRTYDIILHHLIKSQKIEEAYNVFQGMGKDGCEPQLNTYTMMVSMFCSNERVDVAL 453

Query: 204 WVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEP 61
            V ++M+E GV P +  ++ +++ L  ++  EEA   F  M+ KG  P
Sbjct: 454 KVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRP 501


>gb|EMS49071.1| hypothetical protein TRIUR3_09168 [Triticum urartu]
          Length = 534

 Score =  111 bits (278), Expect = 9e-23
 Identities = 54/124 (43%), Positives = 75/124 (60%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   +  G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 323 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRASKFQHAFKMVD 382

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL HL++    EEA +VF  M K GCEP L   TMM  MF S E
Sbjct: 383 EMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMGKDGCEPQLNTYTMMVSMFCSNE 442

Query: 12  NPDM 1
             D+
Sbjct: 443 RVDV 446



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAY 205
           IGP+   Y I++H       ++EA  VF  M ++GC   L T+  ++   C  +++  A 
Sbjct: 389 IGPNSRTYDIILHHLIKSQKIEEAYNVFQGMGKDGCEPQLNTYTMMVSMFCSNERVDVAL 448

Query: 204 WVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEP 61
            V ++M+E GV P +  ++ +++ L  ++  EEA   F  M+ KG  P
Sbjct: 449 KVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRP 496


>ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  110 bits (276), Expect = 2e-22
 Identities = 54/124 (43%), Positives = 76/124 (61%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   +  G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 336 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVD 395

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL +L++    EEA +VF RM  +GCEP L   TMM  MF S E
Sbjct: 396 EMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNE 455

Query: 12  NPDM 1
             DM
Sbjct: 456 RVDM 459


>dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  110 bits (276), Expect = 2e-22
 Identities = 54/124 (43%), Positives = 75/124 (60%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   +  G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 354 PHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVD 413

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M + G+ PN +TY  IL HL++    EEA +VF  M K GCEP L   TMM  MF S E
Sbjct: 414 EMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNE 473

Query: 12  NPDM 1
             D+
Sbjct: 474 RVDV 477



 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAY 205
           IGP+   Y I++H       ++EA  VF  M ++GC   L T+  ++   C  +++  A 
Sbjct: 420 IGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVAL 479

Query: 204 WVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEP 61
            V ++M+E GV P +  ++ +++ L  ++  EEA + F  M+ +G  P
Sbjct: 480 KVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRGIRP 527


>ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
           gi|241914911|gb|EER88055.1| hypothetical protein
           SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  110 bits (274), Expect = 3e-22
 Identities = 54/124 (43%), Positives = 76/124 (61%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F + ++ G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 340 PHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVD 399

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M E  + PN +TY  IL +L++   FEEA +VF RM   GCEP L   TMM  MF S  
Sbjct: 400 EMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNG 459

Query: 12  NPDM 1
             DM
Sbjct: 460 RVDM 463


>ref|XP_004956188.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Setaria italica]
          Length = 557

 Score =  109 bits (273), Expect = 3e-22
 Identities = 54/124 (43%), Positives = 74/124 (59%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   +  G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 346 PHVYCMLINGLGSEERLDEALKYFQLYKESGFPMEVPTCNAVVGAYCRASKFQHAFKMVD 405

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M +  + PN +TY  IL HL++   FEEA  VF +M   GCEP L   TMM  MF S E
Sbjct: 406 EMRKCKIGPNSRTYDIILHHLIKSQKFEEAYDVFQKMGMDGCEPQLNTYTMMVGMFCSNE 465

Query: 12  NPDM 1
             DM
Sbjct: 466 RVDM 469



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAY 205
           IGP+   Y I++H        +EA +VF KM  +GC   L T+  ++   C  +++  A 
Sbjct: 412 IGPNSRTYDIILHHLIKSQKFEEAYDVFQKMGMDGCEPQLNTYTMMVGMFCSNERVDMAL 471

Query: 204 WVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEP 61
            V  +M+E GV P +  ++ +++ L  ++  EEA + F  M+ KG  P
Sbjct: 472 KVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDKGIRP 519


>gb|EXB65620.1| hypothetical protein L484_025886 [Morus notabilis]
          Length = 551

 Score =  107 bits (266), Expect = 2e-21
 Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH +C LI G GS   L+EA+EVF + +  G   ++PT+N+L+ A C   +L  AY V+D
Sbjct: 339 PHIFCTLIIGLGSAKRLNEALEVFRRSKACGFEPEVPTYNALVGAYCWSMQLDNAYKVVD 398

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKK-GCEPDLYACTMMAKMFFSQ 16
           +M E GV PN +TY  IL HL++D   EEA SVF RM ++ GCEP +    +M +MF + 
Sbjct: 399 EMRECGVGPNSRTYDIILHHLIKDKRTEEAFSVFQRMSREPGCEPTVSTYEIMVRMFCNV 458

Query: 15  ENPDM 1
           E  DM
Sbjct: 459 ERLDM 463



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
 Frame = -1

Query: 378 IGPHF--YCILIHGYGSLNMLDEAMEVFAKMERE-GCVADLPTFNSLIWALCRVDKLGQA 208
           +GP+   Y I++H        +EA  VF +M RE GC   + T+  ++   C V++L  A
Sbjct: 405 VGPNSRTYDIILHHLIKDKRTEEAFSVFQRMSREPGCEPTVSTYEIMVRMFCNVERLDMA 464

Query: 207 YWVLDKMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKM 28
             + D+M+  GV P +  ++ +++ L  +D  ++A   F  M+  G  P     + + + 
Sbjct: 465 IQIWDQMKAKGVLPGMHMFSTLINSLCMEDKLDDACKYFQEMMDMGIRPPAQLYSNLKQA 524

Query: 27  FFSQENPDM 1
              +   DM
Sbjct: 525 LLDEGREDM 533



 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 31/109 (28%), Positives = 53/109 (48%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           + ++   Y       EA+E F KM + G  A++  FN L+  LC+      A  V D+M 
Sbjct: 202 FALISRRYARAKKAKEAIETFRKMRKFGLKAEVSDFNRLLDTLCKSKFATIAQQVFDEMS 261

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMM 37
           E   KP++K+Y  +L    ++ +  +   V+  M  +G EPD+    +M
Sbjct: 262 EKRFKPDIKSYTILLEGWGQEKNLLKLKEVYREMKDEGIEPDVVTYGIM 310



 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 32/103 (31%), Positives = 52/103 (50%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y IL+ G+G    L +  EV+ +M+ EG   D+ T+  +I A C+  K  +A+ + D+ME
Sbjct: 272 YTILLEGWGQEKNLLKLKEVYREMKDEGIEPDVVTYGIMINAHCKARKYDEAFALFDEME 331

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDL 55
               KP+   +  ++  L       EA  VF R    G EP++
Sbjct: 332 ANNCKPSPHIFCTLIIGLGSAKRLNEALEVFRRSKACGFEPEV 374


>ref|NP_001147833.1| GTP binding protein [Zea mays] gi|195614010|gb|ACG28835.1| GTP
           binding protein [Zea mays] gi|413952711|gb|AFW85360.1|
           GTP binding protein [Zea mays]
          Length = 547

 Score =  107 bits (266), Expect = 2e-21
 Identities = 53/124 (42%), Positives = 75/124 (60%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC+LI+G GS   LDEA++ F   ++ G   ++PT N+++ A CR  K   A+ ++D
Sbjct: 336 PHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVD 395

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M +  V PN +TY  IL +L++   FEEA ++F RM   GCEP L   TMM  MF S  
Sbjct: 396 EMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNG 455

Query: 12  NPDM 1
             DM
Sbjct: 456 RVDM 459


>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71060, mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  103 bits (257), Expect = 2e-20
 Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH +C LI+G GS   L EA+E F +++  G   + PT+N+++ A C   K+  AY ++D
Sbjct: 330 PHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVD 389

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKK-GCEPDLYACTMMAKMFFSQ 16
           +M + GV PN +TY  IL HL++    +EA SVF RM ++ GCEP L    +M +MF ++
Sbjct: 390 EMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNE 449

Query: 15  ENPDM 1
           E  DM
Sbjct: 450 ERVDM 454



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 33/103 (32%), Positives = 55/103 (53%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           + ++   Y     + EA+E F KME+ G    +  FN L+  LC+   + +A  V DKM+
Sbjct: 193 FALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMK 252

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDL 55
            G  KP++K+Y  +L    +D +  + N V+  M  +G EPD+
Sbjct: 253 HGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDV 295


>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Cucumis sativus]
          Length = 542

 Score =  103 bits (257), Expect = 2e-20
 Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH +C LI+G GS   L EA+E F +++  G   + PT+N+++ A C   K+  AY ++D
Sbjct: 330 PHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVD 389

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKK-GCEPDLYACTMMAKMFFSQ 16
           +M + GV PN +TY  IL HL++    +EA SVF RM ++ GCEP L    +M +MF ++
Sbjct: 390 EMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNE 449

Query: 15  ENPDM 1
           E  DM
Sbjct: 450 ERVDM 454



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 33/103 (32%), Positives = 55/103 (53%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           + ++   Y     + EA+E F KME+ G    +  FN L+  LC+   + +A  V DKM+
Sbjct: 193 FALITRRYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMK 252

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDL 55
            G  KP++K+Y  +L    +D +  + N V+  M  +G EPD+
Sbjct: 253 HGRFKPDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDV 295


>gb|EOY16398.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
           [Theobroma cacao] gi|508724502|gb|EOY16399.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein
           isoform 1 [Theobroma cacao] gi|508724503|gb|EOY16400.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein
           isoform 1 [Theobroma cacao] gi|508724504|gb|EOY16401.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein
           isoform 1 [Theobroma cacao] gi|508724505|gb|EOY16402.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein
           isoform 1 [Theobroma cacao]
          Length = 480

 Score =  102 bits (255), Expect = 4e-20
 Identities = 53/121 (43%), Positives = 77/121 (63%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y +L+H YG  N +++A++ F +MER G  AD+  +N+LI A C+V+KL   Y VL++M+
Sbjct: 273 YSVLVHTYGIENRIEDAVDAFLEMERNGIKADVVVYNALIGAFCKVNKLKNVYRVLNEMD 332

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQENPD 4
             GV PN +T   IL+ L+     +EA  VF RMIK+ CEPD    T+M KMF  ++  D
Sbjct: 333 SKGVAPNARTCNIILNSLIGRGETDEAFKVFRRMIKE-CEPDADTYTIMIKMFCDRDELD 391

Query: 3   M 1
           M
Sbjct: 392 M 392



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 32/109 (29%), Positives = 58/109 (53%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           +CI++  Y  +  ++E +  F  ME+     +L  FN L+  LC+   + +A  + DKM+
Sbjct: 134 FCIIMRRYARVQKVEETVYTFNIMEKYDVPPNLAAFNGLLSTLCKSKNVRKAQEIFDKMK 193

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMM 37
           +  V P+ KTY+ +L    R  +  +A  +F  M+  GC+PD+    +M
Sbjct: 194 DRFV-PDSKTYSILLEGWGRAPNLPKAREIFREMVDMGCDPDIVTYGIM 241


>ref|XP_006301167.1| hypothetical protein CARUB_v10021564mg, partial [Capsella rubella]
           gi|482569877|gb|EOA34065.1| hypothetical protein
           CARUB_v10021564mg, partial [Capsella rubella]
          Length = 486

 Score =  100 bits (250), Expect = 2e-19
 Identities = 53/113 (46%), Positives = 71/113 (62%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y +L+H YG+ N L+EA++ F +MER G  AD+  FNSLI A C+ +++   Y VL +M+
Sbjct: 279 YSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAIFNSLIGAFCKANRMKNVYRVLKEMK 338

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMF 25
             GV PN K+   IL HL+     +EA  VF +MIK  CEPD    TMM KMF
Sbjct: 339 NKGVTPNSKSCNIILRHLIDRGETDEAFDVFRKMIKV-CEPDADTYTMMIKMF 390



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 33/109 (30%), Positives = 57/109 (52%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           +CI++  Y     +DEA+  F  ME+     +L  FN L+ ALC+   + +A  + + M 
Sbjct: 140 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMR 199

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMM 37
           +    P+ KTY+ +L    ++ +  +A  VF  MI  GC PD+   ++M
Sbjct: 200 D-RFTPSSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIM 247



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/103 (28%), Positives = 53/103 (51%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y IL+ G+G    L +A EVF +M   GC  D+ T++ ++  LC+  ++ +A  ++  M+
Sbjct: 209 YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMD 268

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDL 55
               KP    Y+ ++     ++  EEA   F  M + G + D+
Sbjct: 269 PSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADV 311


>gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  100 bits (248), Expect = 3e-19
 Identities = 52/113 (46%), Positives = 71/113 (62%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y +L+H YG+ N L+EA++ F +MER G  AD+  FNSLI A C+ +++   Y VL +M+
Sbjct: 274 YSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMK 333

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMF 25
             GV PN K+   IL HL+     +EA  VF +MIK  CEPD    TM+ KMF
Sbjct: 334 SKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMF 385



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 34/109 (31%), Positives = 57/109 (52%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           +CI++  Y     +DEA+  F  ME+     +L  FN L+ ALC+   + +A  V + M 
Sbjct: 135 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 194

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMM 37
           +    P+ KTY+ +L    ++ +  +A  VF  MI  GC PD+   ++M
Sbjct: 195 D-RFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIM 242



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/103 (28%), Positives = 53/103 (51%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y IL+ G+G    L +A EVF +M   GC  D+ T++ ++  LC+  ++ +A  ++  M+
Sbjct: 204 YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMD 263

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDL 55
               KP    Y+ ++     ++  EEA   F  M + G + D+
Sbjct: 264 PSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADV 306


>ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
           gi|332197848|gb|AEE35969.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  100 bits (248), Expect = 3e-19
 Identities = 52/113 (46%), Positives = 71/113 (62%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y +L+H YG+ N L+EA++ F +MER G  AD+  FNSLI A C+ +++   Y VL +M+
Sbjct: 310 YSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMK 369

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMF 25
             GV PN K+   IL HL+     +EA  VF +MIK  CEPD    TM+ KMF
Sbjct: 370 SKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMF 421



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 34/109 (31%), Positives = 57/109 (52%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           +CI++  Y     +DEA+  F  ME+     +L  FN L+ ALC+   + +A  V + M 
Sbjct: 171 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMR 230

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMM 37
           +    P+ KTY+ +L    ++ +  +A  VF  MI  GC PD+   ++M
Sbjct: 231 D-RFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIM 278



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/103 (28%), Positives = 53/103 (51%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y IL+ G+G    L +A EVF +M   GC  D+ T++ ++  LC+  ++ +A  ++  M+
Sbjct: 240 YSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMD 299

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDL 55
               KP    Y+ ++     ++  EEA   F  M + G + D+
Sbjct: 300 PSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADV 342


>ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334980|gb|EFH65398.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 482

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 52/113 (46%), Positives = 70/113 (61%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           Y +L+H YG+   L+EA++ F +MER G  AD+  FNSLI A C+ +++   Y VL +M+
Sbjct: 275 YSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVLKEMK 334

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMF 25
             GV PN K+   IL HL+     +EA  VF +MIK  CEPD    TMM KMF
Sbjct: 335 SKGVTPNSKSCNIILRHLIDRGEKDEAFDVFRKMIKV-CEPDADTYTMMIKMF 386



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 31/109 (28%), Positives = 56/109 (51%)
 Frame = -1

Query: 363 YCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLDKME 184
           +CI++  Y     +DEA+  F  ME+     +L  FN L+ ALC+   + +A  + + M 
Sbjct: 136 FCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEIFENMR 195

Query: 183 EGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMM 37
           +    P+ KTY+ +L    ++ +  +A  VF  M+  G  PD+   ++M
Sbjct: 196 D-RFTPDSKTYSILLEGWGKEPNLPKAREVFREMVDAGSLPDIVTYSIM 243


>ref|XP_002315895.2| hypothetical protein POPTR_0010s12490g [Populus trichocarpa]
           gi|550329653|gb|EEF02066.2| hypothetical protein
           POPTR_0010s12490g [Populus trichocarpa]
          Length = 488

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 46/124 (37%), Positives = 74/124 (59%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH YC LI+G G+   L EA+E F   +  G V + PT+N+++ A C  +++      +D
Sbjct: 277 PHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTID 336

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKKGCEPDLYACTMMAKMFFSQE 13
           +M +GGV P+ +TY  IL HL+R    + A SVF +M  +GCEP +    ++ +MF +++
Sbjct: 337 EMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCEPSVSTYEIIVRMFCNED 396

Query: 12  NPDM 1
             DM
Sbjct: 397 RVDM 400


>ref|XP_004298459.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 515

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
 Frame = -1

Query: 372 PHFYCILIHGYGSLNMLDEAMEVFAKMEREGCVADLPTFNSLIWALCRVDKLGQAYWVLD 193
           PH +C+LI+G GS   L EA+E F + +  G  A+ PT+N+++ A C   ++  A+ V+D
Sbjct: 301 PHIFCMLINGLGSEKRLAEALEFFERFKASGLEAEAPTYNAVVGAYCWSMRMSDAFRVVD 360

Query: 192 KMEEGGVKPNVKTYAPILSHLVRDDSFEEANSVFNRMIKK-GCEPDLYACTMMAKMFFSQ 16
           +M + G+ PN +TY  IL HLV+    E+A SVF R+ ++ GCEP +    ++ +MF ++
Sbjct: 361 EMRKCGIGPNSRTYDIILHHLVKHRRTEQAYSVFQRISREPGCEPTVSTYEILVRMFCNE 420

Query: 15  ENPDM 1
              DM
Sbjct: 421 NRVDM 425