BLASTX nr result
ID: Ephedra28_contig00028889
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00028889
(485 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_001758062.1| predicted protein [Physcomitrella patens] gi... 90 4e-16
ref|XP_002993280.1| hypothetical protein SELMODRAFT_136810 [Sela... 80 3e-13
ref|XP_002969897.1| hypothetical protein SELMODRAFT_30474 [Selag... 79 6e-13
gb|EEE61928.1| hypothetical protein OsJ_16670 [Oryza sativa Japo... 78 1e-12
gb|EEC78276.1| hypothetical protein OsI_17972 [Oryza sativa Indi... 78 1e-12
gb|EAY96093.1| hypothetical protein OsI_17969 [Oryza sativa Indi... 78 1e-12
emb|CAJ86300.1| H0124B04.17 [Oryza sativa Indica Group] 78 1e-12
emb|CAE03438.1| OSJNBa0032F06.21 [Oryza sativa Japonica Group] 78 1e-12
gb|EXC15971.1| DNA mismatch repair protein Msh3 [Morus notabilis] 77 3e-12
ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-... 75 9e-12
ref|XP_006827711.1| hypothetical protein AMTR_s00009p00259730 [A... 74 3e-11
gb|EMJ20105.1| hypothetical protein PRUPE_ppa000560mg [Prunus pe... 73 4e-11
ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [... 72 1e-10
ref|XP_006653893.1| PREDICTED: DNA mismatch repair protein MSH3-... 71 1e-10
ref|XP_004960023.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch... 71 1e-10
ref|XP_004308095.1| PREDICTED: DNA mismatch repair protein MSH3-... 70 2e-10
ref|XP_003579511.1| PREDICTED: DNA mismatch repair protein Msh3-... 70 2e-10
ref|XP_004234387.1| PREDICTED: DNA mismatch repair protein MSH3-... 69 6e-10
ref|XP_006490371.1| PREDICTED: DNA mismatch repair protein MSH3-... 69 8e-10
gb|AFW59948.1| hypothetical protein ZEAMMB73_053204 [Zea mays] 69 8e-10
>ref|XP_001758062.1| predicted protein [Physcomitrella patens] gi|162690939|gb|EDQ77304.1|
predicted protein [Physcomitrella patens]
Length = 1109
Score = 89.7 bits (221), Expect = 4e-16
Identities = 52/95 (54%), Positives = 62/95 (65%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V+PYYVSYLAE L+ EEA +Q ITFLYKLVPG+A RSFGLHV
Sbjct: 959 VSPYYVSYLAEE------LRYAEEA------------TQKITFLYKLVPGVASRSFGLHV 1000
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAA 286
ARLAQLP+ C+ QAA + K E E++SR A SA+
Sbjct: 1001 ARLAQLPEVCVLQAAAKAAKLEEEVNSRTAAASAS 1035
>ref|XP_002993280.1| hypothetical protein SELMODRAFT_136810 [Selaginella moellendorffii]
gi|300138950|gb|EFJ05701.1| hypothetical protein
SELMODRAFT_136810 [Selaginella moellendorffii]
Length = 942
Score = 80.1 bits (196), Expect = 3e-13
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y++SYLAE E D D+ +V E +Q +TFLYKL PG A RSFG++V
Sbjct: 824 VQAYHMSYLAESP------------EGDLDKSSVQEAAQKVTFLYKLQPGAASRSFGINV 871
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKS 280
ARLA++P+SC+ +AA + FE+E+ SR + S
Sbjct: 872 ARLAKVPESCVARAAEKAAAFEDEMSSRHSSNS 904
>ref|XP_002969897.1| hypothetical protein SELMODRAFT_30474 [Selaginella moellendorffii]
gi|300162408|gb|EFJ29021.1| hypothetical protein
SELMODRAFT_30474 [Selaginella moellendorffii]
Length = 876
Score = 79.0 bits (193), Expect = 6e-13
Identities = 41/88 (46%), Positives = 57/88 (64%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y++SYLAE E D D+ +V E +Q +TFLYKL PG A RSFG++V
Sbjct: 801 VQAYHMSYLAESP------------EGDLDKSSVQEAAQKVTFLYKLQPGAASRSFGINV 848
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSR 265
ARLA++P+SC+ +AA + FE+E+ SR
Sbjct: 849 ARLAKVPESCVARAAEKAAAFEDEMSSR 876
>gb|EEE61928.1| hypothetical protein OsJ_16670 [Oryza sativa Japonica Group]
Length = 2115
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLK--NREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGL 175
V Y+VSYLA KLL+ +R+ N+ + + E ITFLYKLV G +DRSFGL
Sbjct: 787 VGAYHVSYLA----TRKLLEVADRQMVINNTETKDLGE----ITFLYKLVAGASDRSFGL 838
Query: 176 HVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSIC 334
+VA LAQLP SCIE+A++M+ K + E+ R+ K+ L +P++ K +C
Sbjct: 839 NVALLAQLPSSCIERASVMAAKLQQELSERE--KNKFCRLMDVPRESSPKELC 889
>gb|EEC78276.1| hypothetical protein OsI_17972 [Oryza sativa Indica Group]
Length = 2246
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLK--NREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGL 175
V Y+VSYLA KLL+ +R+ N+ + + E ITFLYKLV G +DRSFGL
Sbjct: 938 VGAYHVSYLA----TRKLLEVADRQMVINNTETKDLGE----ITFLYKLVAGASDRSFGL 989
Query: 176 HVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSIC 334
+VA LAQLP SCIE+A++M+ K + E+ R+ K+ L +P++ K +C
Sbjct: 990 NVALLAQLPSSCIERASVMAAKLQQELSERE--KNKFCRLMDVPRESSPKELC 1040
>gb|EAY96093.1| hypothetical protein OsI_17969 [Oryza sativa Indica Group]
Length = 237
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLK--NREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGL 175
V Y+VSYLA KLL+ +R+ N+ + + E ITFLYKLV G +DRSFGL
Sbjct: 87 VGAYHVSYLA----TRKLLEVADRQMVINNTETKDLGE----ITFLYKLVAGASDRSFGL 138
Query: 176 HVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSIC 334
+VA LAQLP SCIE+A++M+ K + E+ R+ K+ L +P++ K +C
Sbjct: 139 NVALLAQLPSSCIERASVMAAKLQQELSERE--KNKFCRLMDVPRESSPKELC 189
>emb|CAJ86300.1| H0124B04.17 [Oryza sativa Indica Group]
Length = 2505
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLK--NREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGL 175
V Y+VSYLA KLL+ +R+ N+ + + E ITFLYKLV G +DRSFGL
Sbjct: 1172 VGAYHVSYLA----TRKLLEVADRQMVINNTETKDLGE----ITFLYKLVAGASDRSFGL 1223
Query: 176 HVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSIC 334
+VA LAQLP SCIE+A++M+ K + E+ R+ K+ L +P++ K +C
Sbjct: 1224 NVALLAQLPSSCIERASVMAAKLQQELSERE--KNKFCRLMDVPRESSPKELC 1274
>emb|CAE03438.1| OSJNBa0032F06.21 [Oryza sativa Japonica Group]
Length = 1085
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLK--NREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGL 175
V Y+VSYLA KLL+ +R+ N+ + + E ITFLYKLV G +DRSFGL
Sbjct: 935 VGAYHVSYLA----TRKLLEVADRQMVINNTETKDLGE----ITFLYKLVAGASDRSFGL 986
Query: 176 HVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSIC 334
+VA LAQLP SCIE+A++M+ K + E+ R+ K+ L +P++ K +C
Sbjct: 987 NVALLAQLPSSCIERASVMAAKLQQELSERE--KNKFCRLMDVPRESSPKELC 1037
>gb|EXC15971.1| DNA mismatch repair protein Msh3 [Morus notabilis]
Length = 1080
Score = 76.6 bits (187), Expect = 3e-12
Identities = 47/133 (35%), Positives = 74/133 (55%)
Frame = +2
Query: 80 NDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHVARLAQLPDSCIEQAAIMSTKFENEIH 259
N+ SE ++T+LYKLVPG++++SFG VA LAQLP SCI +A M+++ E +
Sbjct: 947 NEETGTMNSESDHDVTYLYKLVPGVSEKSFGFKVAELAQLPSSCINRAVTMASRLEMVVS 1006
Query: 260 SRQLAKSAAVPLSILPKDVITKSICQKEELELTKPSLELEIQLAHDGPRLSEILRLLESA 439
+R K + L + T S+CQK+E K +LE+E DG E +L++A
Sbjct: 1007 NRSANKCGKMHL------LETSSLCQKDE----KMTLEMESSKCLDG--YKEFFLILKNA 1054
Query: 440 MTESGPAEGMLAL 478
++ A+ + L
Sbjct: 1055 LSVDDHAKSLQLL 1067
>ref|XP_002263286.2| PREDICTED: DNA mismatch repair protein Msh3-like [Vitis vinifera]
Length = 1137
Score = 75.1 bits (183), Expect = 9e-12
Identities = 51/160 (31%), Positives = 85/160 (53%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSY+ + D + + ++ ++ +D+ + +++T+LYKLVPG+++RSFG V
Sbjct: 953 VGAYHVSYMMSQRAMD-MDTDTDKTDSKSDKNAQTMDHEDVTYLYKLVPGVSERSFGFKV 1011
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSICQKEELELTK 361
A+LAQLP SCI +A +M+ + E I SR SA L + + +S C + E
Sbjct: 1012 AQLAQLPSSCIRRANVMAAELEAMIVSRVKNSSAQKTLQGSQQSISIQSGCSRAE----- 1066
Query: 362 PSLELEIQLAHDGPRLSEILRLLESAMTESGPAEGMLALQ 481
+I L D R E L+SA+ + P + L+
Sbjct: 1067 -----QIGLEEDACR--EFFLDLKSALGNADPERSLQFLK 1099
>ref|XP_006827711.1| hypothetical protein AMTR_s00009p00259730 [Amborella trichopoda]
gi|548832331|gb|ERM95127.1| hypothetical protein
AMTR_s00009p00259730 [Amborella trichopoda]
Length = 1092
Score = 73.6 bits (179), Expect = 3e-11
Identities = 42/88 (47%), Positives = 53/88 (60%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V PY+VSYL K E EN N+TFLYK+VPG D+SFGL+V
Sbjct: 951 VGPYHVSYLTT--------KTTENGENTGHG--------NVTFLYKVVPGGTDKSFGLNV 994
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSR 265
A LAQLP SCI +AA+M+ K E+++ SR
Sbjct: 995 AGLAQLPASCIARAAVMAAKLESDVCSR 1022
>gb|EMJ20105.1| hypothetical protein PRUPE_ppa000560mg [Prunus persica]
Length = 1096
Score = 72.8 bits (177), Expect = 4e-11
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSYL + D D V + ++++T+LYKLVPG+++RSFG V
Sbjct: 937 VEAYHVSYLT--------------SNRDMDTVGMQSENEDVTYLYKLVPGVSERSFGFKV 982
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSR 265
A LAQLP SCI QA IM+ + E ++SR
Sbjct: 983 AELAQLPSSCIRQATIMAARLEAVVNSR 1010
>ref|XP_002510803.1| DNA mismatch repair protein MSH3, putative [Ricinus communis]
gi|223549918|gb|EEF51405.1| DNA mismatch repair protein
MSH3, putative [Ricinus communis]
Length = 1100
Score = 71.6 bits (174), Expect = 1e-10
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSYL AE +ND ++++T+LYKLVPG+++RSFG V
Sbjct: 944 VGAYHVSYLM--------------AEKNNDATDSKFDNEDVTYLYKLVPGVSERSFGFKV 989
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSR 265
A+LAQLP SCIE+A +M+ + E I R
Sbjct: 990 AQLAQLPTSCIERATVMAARLEEAISCR 1017
>ref|XP_006653893.1| PREDICTED: DNA mismatch repair protein MSH3-like, partial [Oryza
brachyantha]
Length = 894
Score = 71.2 bits (173), Expect = 1e-10
Identities = 42/92 (45%), Positives = 57/92 (61%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSYLA + L +R+ N+ + E ITFLYKLV G +DRSFGL+V
Sbjct: 742 VGAYHVSYLATRKLLE--LADRQVVINNTGMKHLGE----ITFLYKLVAGASDRSFGLNV 795
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQLAK 277
A LAQLP CIE+A++M+ K + E+ R+ K
Sbjct: 796 ALLAQLPSRCIERASVMAAKLQEELSVREKNK 827
>ref|XP_004960023.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3-like
[Setaria italica]
Length = 1104
Score = 71.2 bits (173), Expect = 1e-10
Identities = 41/89 (46%), Positives = 52/89 (58%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSYLA + K E + D ITFLYKLV G +DRSFGL+V
Sbjct: 946 VGAYHVSYLATRKLVEVTDKPLESSPESKDL-------GEITFLYKLVAGASDRSFGLNV 998
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQ 268
A LAQLP CIE+A+IM+ K + E+ R+
Sbjct: 999 ALLAQLPSRCIERASIMAAKLQEELSMRE 1027
>ref|XP_004308095.1| PREDICTED: DNA mismatch repair protein MSH3-like [Fragaria vesca
subsp. vesca]
Length = 1106
Score = 70.5 bits (171), Expect = 2e-10
Identities = 46/119 (38%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQN--ITFLYKLVPGLADRSFGL 175
V Y+VSYL +D DR TV S+N +T+LYKLVPG+++RSFG
Sbjct: 946 VGAYHVSYLT----------------SDRDRGTVDMTSENEDVTYLYKLVPGVSERSFGF 989
Query: 176 HVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSAAVPLSILPKDVITKSICQKEELE 352
VA LAQLP SCI +A M+ + E + R+ + L P ++ QKEE+E
Sbjct: 990 KVAELAQLPSSCIRRATFMADRLEAVVRRRESDRYGNKSLLRSP------TMDQKEEVE 1042
>ref|XP_003579511.1| PREDICTED: DNA mismatch repair protein Msh3-like [Brachypodium
distachyon]
Length = 968
Score = 70.5 bits (171), Expect = 2e-10
Identities = 43/89 (48%), Positives = 56/89 (62%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSYL S KLL+ +E T +E ITFLYKLV G +DRSFGL+V
Sbjct: 819 VGAYHVSYL----STRKLLEITDEKMEIG---TETEDLGEITFLYKLVAGASDRSFGLNV 871
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQ 268
A LAQLP SCI +A++M+ K + E+ R+
Sbjct: 872 ALLAQLPLSCIRRASVMAAKLQEELSERE 900
>ref|XP_004234387.1| PREDICTED: DNA mismatch repair protein MSH3-like [Solanum
lycopersicum]
Length = 1117
Score = 68.9 bits (167), Expect = 6e-10
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V PY+VSYL + K+ E+ ++ N ++IT+LYKL PG++ RSFG V
Sbjct: 954 VGPYHVSYLTSQRDVNGDFKSNEKMDHIN--------GEDITYLYKLAPGVSGRSFGFKV 1005
Query: 182 ARLAQLPDSCIEQAAIMSTKFE 247
A+LAQLP +CI+QA +++ K E
Sbjct: 1006 AQLAQLPVTCIQQAIVIAAKLE 1027
>ref|XP_006490371.1| PREDICTED: DNA mismatch repair protein MSH3-like [Citrus sinensis]
Length = 1087
Score = 68.6 bits (166), Expect = 8e-10
Identities = 35/87 (40%), Positives = 56/87 (64%)
Frame = +2
Query: 104 SEVSQNITFLYKLVPGLADRSFGLHVARLAQLPDSCIEQAAIMSTKFENEIHSRQLAKSA 283
S+ Q++T+LYK+VPG+++ SFG VA+LAQLP SCI +A +++ K E E+ SR +SA
Sbjct: 951 SKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSA 1010
Query: 284 AVPLSILPKDVITKSICQKEELELTKP 364
+D++ K Q++E + P
Sbjct: 1011 -------KRDLLVKLSDQEQEAQENMP 1030
>gb|AFW59948.1| hypothetical protein ZEAMMB73_053204 [Zea mays]
Length = 223
Score = 68.6 bits (166), Expect = 8e-10
Identities = 40/92 (43%), Positives = 53/92 (57%)
Frame = +2
Query: 2 VNPYYVSYLAEGSSADKLLKNREEAENDNDRVTVSEVSQNITFLYKLVPGLADRSFGLHV 181
V Y+VSYLA + K E + ND I FLYKLV G +DRSFGL+V
Sbjct: 70 VGAYHVSYLATRKLLEVTDKQVETSPEANDL-------GEIIFLYKLVAGASDRSFGLNV 122
Query: 182 ARLAQLPDSCIEQAAIMSTKFENEIHSRQLAK 277
A LAQLP CI++A++M+ K + E+ R+ K
Sbjct: 123 ALLAQLPSRCIKRASVMAAKLQEELSPREEIK 154