BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00028836
         (400 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi...   126   3e-27
ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Sela...   124   2e-26
ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Sela...   124   2e-26
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...   112   5e-23
gb|EXB53230.1| DNA-directed RNA polymerase III subunit RPC1 [Mor...   105   8e-21
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]          104   1e-20
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...   104   1e-20
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...    99   6e-19
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...    99   6e-19
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...    99   8e-19
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...    99   8e-19
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...    98   1e-18
ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP15...    98   1e-18
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family...    97   2e-18
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...    96   4e-18
ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostre...    96   4e-18
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...    96   5e-18
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...    96   5e-18
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus...    96   5e-18
gb|EMT07732.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg...    96   5e-18

>ref|XP_001757221.1| predicted protein [Physcomitrella patens]
           gi|162691719|gb|EDQ78080.1| predicted protein
           [Physcomitrella patens]
          Length = 1397

 Score =  126 bits (317), Expect = 3e-27
 Identities = 54/87 (62%), Positives = 71/87 (81%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           SINF+K+PFIED GPRKI+S+ F TMS  +IVKA+ELHVYE+ L+  P+R P P+ ++DT
Sbjct: 11  SINFSKRPFIEDVGPRKIESIRFGTMSKQDIVKASELHVYESMLYTMPERNPAPYSVVDT 70

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGH 18
            LGT+ K G+C+TC GK +DCPGH+GH
Sbjct: 71  RLGTTNKKGECSTCFGKLADCPGHFGH 97


>ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
           gi|300158014|gb|EFJ24638.1| hypothetical protein
           SELMODRAFT_442419 [Selaginella moellendorffii]
          Length = 1348

 Score =  124 bits (310), Expect = 2e-26
 Identities = 53/88 (60%), Positives = 70/88 (79%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           SINFTK   ++DAGPRKIKS+ F+TMS  E+ K AE+ ++E SL+  P+RKP P+G+LDT
Sbjct: 15  SINFTKGLHLDDAGPRKIKSMRFSTMSSEEVTKTAEVQIFEHSLYQLPERKPLPYGVLDT 74

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            LGTS K GQC TC+GK +DCPGH+G++
Sbjct: 75  RLGTSNKKGQCTTCDGKLADCPGHFGYI 102


>ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
           gi|300146624|gb|EFJ13293.1| hypothetical protein
           SELMODRAFT_446351 [Selaginella moellendorffii]
          Length = 1393

 Score =  124 bits (310), Expect = 2e-26
 Identities = 53/88 (60%), Positives = 70/88 (79%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           SINFTK   ++DAGPRKIKS+ F+TMS  E+ K AE+ ++E SL+  P+RKP P+G+LDT
Sbjct: 15  SINFTKGLHLDDAGPRKIKSMRFSTMSSEEVTKTAEVQIFEHSLYQLPERKPLPYGVLDT 74

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            LGTS K GQC TC+GK +DCPGH+G++
Sbjct: 75  RLGTSNKKGQCTTCDGKLADCPGHFGYI 102


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
           gi|548832896|gb|ERM95665.1| hypothetical protein
           AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score =  112 bits (280), Expect = 5e-23
 Identities = 51/88 (57%), Positives = 62/88 (70%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           + NFTK+PF+ED GPRKIKSV F  +SG EIVKAAE  VY+   +   D KP  HG+LDT
Sbjct: 7   AFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLDT 66

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            +G S K G CATC G F  CPGH+G++
Sbjct: 67  RMGFSTKSGSCATCFGDFQTCPGHFGYL 94


>gb|EXB53230.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
          Length = 232

 Score =  105 bits (261), Expect = 8e-21
 Identities = 47/88 (53%), Positives = 65/88 (73%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           +I FTKQPF+ED GPR+IKS+ FT  S +EI K AE+ V++   +  P+RKP   G+LD 
Sbjct: 10  NILFTKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYD-PNRKPVEDGLLDP 68

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            +G + K  +CATC+G+FSDCPGHYG++
Sbjct: 69  RMGPANKFSECATCHGRFSDCPGHYGYL 96


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score =  104 bits (260), Expect = 1e-20
 Identities = 46/85 (54%), Positives = 65/85 (76%)
 Frame = -3

Query: 269 FTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTHLG 90
           FTK+P+IED GPRKIKS+ F+ +S +EI KAAE+ VY+ +L+  P  +P   G+LD  +G
Sbjct: 5   FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQ-ALYYDPKSRPIEGGLLDPRMG 63

Query: 89  TSYKIGQCATCNGKFSDCPGHYGHV 15
            + K G+CATC+G F+DCPGHYG++
Sbjct: 64  PANKSGKCATCHGNFADCPGHYGYL 88


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Cucumis sativus]
          Length = 1400

 Score =  104 bits (259), Expect = 1e-20
 Identities = 50/87 (57%), Positives = 63/87 (72%)
 Frame = -3

Query: 269 FTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTHLG 90
           FTKQP+IED GPRKIKS+ FTT SGAEI K AE+ VY+  L+    RKP   G+LD  +G
Sbjct: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYK-GLYYDTTRKPIDGGLLDPRMG 69

Query: 89  TSYKIGQCATCNGKFSDCPGHYGHVHV 9
            + K  +CATC+  F DCPGHYG+V++
Sbjct: 70  PANKGCKCATCHANFGDCPGHYGYVNL 96


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
           brachyantha]
          Length = 1389

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 40/91 (43%), Positives = 68/91 (74%)
 Frame = -3

Query: 287 PTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 108
           P   +  TK+PFIEDAG R+IKS+ F+  SG E+ ++AE+ V+ + ++   + +P P+G+
Sbjct: 4   PEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYN-QEMRPVPNGL 62

Query: 107 LDTHLGTSYKIGQCATCNGKFSDCPGHYGHV 15
           LDT +G + K+G+C+TC+G F++CPGH+G++
Sbjct: 63  LDTRMGAANKLGECSTCHGSFAECPGHFGYL 93


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           isoform X1 [Citrus sinensis]
           gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
           RNA polymerase III subunit rpc1-like isoform X2 [Citrus
           sinensis]
          Length = 1404

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 47/88 (53%), Positives = 64/88 (72%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           SI FTKQP+IED GPRKI+S+ F+ MS +EI+KAAE+ VY+   +   +R P   G+LD 
Sbjct: 11  SIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYS-SNRVPIEGGLLDP 69

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            +G + K   CATC+G FS+CPGHYG++
Sbjct: 70  RMGPANKSCTCATCHGGFSNCPGHYGYL 97


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 40/91 (43%), Positives = 67/91 (73%)
 Frame = -3

Query: 287 PTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 108
           P   +  TK+PFIED G R+IKS+ F+  SG E+ ++AE+ V+ + ++   + KP P+G+
Sbjct: 4   PEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNH-EMKPVPNGL 62

Query: 107 LDTHLGTSYKIGQCATCNGKFSDCPGHYGHV 15
           LDT +G + K+G+C+TC+G F++CPGH+G++
Sbjct: 63  LDTRMGAANKLGECSTCHGSFAECPGHFGYL 93


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
           gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
           Japonica Group] gi|38347455|emb|CAD41360.2|
           OSJNBa0076N16.24 [Oryza sativa Japonica Group]
           gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
           Japonica Group] gi|116310339|emb|CAH67354.1|
           OSIGBa0130B08.14 [Oryza sativa Indica Group]
           gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
           Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195112|gb|EEC77539.1| hypothetical protein
           OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 40/91 (43%), Positives = 67/91 (73%)
 Frame = -3

Query: 287 PTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 108
           P   +  TK+PFIED G R+IKS+ F+  SG E+ ++AE+ V+ + ++   + KP P+G+
Sbjct: 4   PEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNH-EMKPVPNGL 62

Query: 107 LDTHLGTSYKIGQCATCNGKFSDCPGHYGHV 15
           LDT +G + K+G+C+TC+G F++CPGH+G++
Sbjct: 63  LDTRMGAANKLGECSTCHGSFAECPGHFGYL 93


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
           gi|241937900|gb|EES11045.1| hypothetical protein
           SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 43/91 (47%), Positives = 65/91 (71%)
 Frame = -3

Query: 287 PTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 108
           P   +  TK+PFIED G R+IKS+ F+ +SG+EI K+AE+ V+   ++   D KP P+G+
Sbjct: 4   PEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGH-DMKPVPNGL 62

Query: 107 LDTHLGTSYKIGQCATCNGKFSDCPGHYGHV 15
           LD  +G   K  +C+TC+G+FSDCPGH+G++
Sbjct: 63  LDPRMGVPNKREKCSTCHGEFSDCPGHFGYL 93


>ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP1545]
           gi|226461851|gb|EEH59144.1| predicted protein
           [Micromonas pusilla CCMP1545]
          Length = 1591

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = -3

Query: 275 INFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTH 96
           + FTK PF E   PRKI+SV F+ MS  EI K    HVYE +L+  P R P P GILD  
Sbjct: 20  VEFTKDPFEEPTAPRKIRSVRFSLMSPQEISKVGVFHVYERNLYQMPQRVPLPGGILDPR 79

Query: 95  LGTSYKIG-QCATCNGKFSDCPGHYGHV 15
           +GT+ K G +CATC GK  DC GH+G+V
Sbjct: 80  MGTTDKKGAECATCKGKLIDCAGHFGYV 107


>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 43/91 (47%), Positives = 64/91 (70%)
 Frame = -3

Query: 287 PTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGI 108
           P   +  TK+PFIED G R+IKS+ F+ +SG+EI K+AE+ V+   ++   D  P P+G+
Sbjct: 4   PEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYD-RDMTPVPNGL 62

Query: 107 LDTHLGTSYKIGQCATCNGKFSDCPGHYGHV 15
           LD  +G   K G+C TC+G+FSDCPGH+G++
Sbjct: 63  LDPRMGIPTKRGKCNTCHGEFSDCPGHFGYL 93


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 1394

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/89 (48%), Positives = 64/89 (71%)
 Frame = -3

Query: 275 INFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDTH 96
           I +TKQP+IED GPR+IKS+ F+TMSG++I+KA+E  V+    +   ++K    G+LDT 
Sbjct: 8   IIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVH-LGQYYDANKKAIVGGLLDTR 66

Query: 95  LGTSYKIGQCATCNGKFSDCPGHYGHVHV 9
           +G   K G C TC G F+DCPGH+G++++
Sbjct: 67  MGAPNKHGTCQTCGGSFTDCPGHFGYLNL 95


>ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
           gi|116061779|emb|CAL52497.1| RNA polymerase I, large
           subunit (ISS) [Ostreococcus tauri]
          Length = 1406

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
 Frame = -3

Query: 317 RDNPFAHNPGPTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMF 138
           RD+     P    +I FTK PF   + PRKI+SV F+ MS +EI +A   HV+E +L+  
Sbjct: 5   RDDVRQEAPADAAAIEFTKIPFAPASTPRKIRSVKFSLMSSSEIARAGVFHVFERNLYQM 64

Query: 137 PDRKPCPHGILDTHLGTSYKI-GQCATCNGKFSDCPGHYGHV 15
           P R P  +GILD  +GT+ K  G+CATC G   DC GH+G++
Sbjct: 65  PQRTPMVNGILDPRMGTTDKRGGECATCRGSMVDCAGHFGYI 106


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           isoform X2 [Solanum tuberosum]
          Length = 1243

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/88 (50%), Positives = 61/88 (69%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           S+  TKQP+IED GPRKIKS+ F+  S +EI+K+AE+ VY   L+    +KP  +G+LD 
Sbjct: 7   SLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVY-LGLYYESTKKPIQNGLLDP 65

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            +G   K G C TC+G F +CPGHYG++
Sbjct: 66  RMGPPNKNGCCETCHGNFRECPGHYGYL 93


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           isoform X1 [Solanum tuberosum]
          Length = 1394

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/88 (50%), Positives = 61/88 (69%)
 Frame = -3

Query: 278 SINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHGILDT 99
           S+  TKQP+IED GPRKIKS+ F+  S +EI+K+AE+ VY   L+    +KP  +G+LD 
Sbjct: 7   SLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVY-LGLYYESTKKPIQNGLLDP 65

Query: 98  HLGTSYKIGQCATCNGKFSDCPGHYGHV 15
            +G   K G C TC+G F +CPGHYG++
Sbjct: 66  RMGPPNKNGCCETCHGNFRECPGHYGYL 93


>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 46/96 (47%), Positives = 66/96 (68%)
 Frame = -3

Query: 296 NPGPTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCP 117
           N G T  I FTK+PF+EDAGPRKIK++ F+ +S +EI K  E+ V++ S +    +KP  
Sbjct: 2   NRGRTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGS-YYDSFKKPIH 60

Query: 116 HGILDTHLGTSYKIGQCATCNGKFSDCPGHYGHVHV 9
            G+LD  +G + K   CATC+G F DCPGHYG++++
Sbjct: 61  GGLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNL 96


>gb|EMT07732.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
          Length = 150

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 39/92 (42%), Positives = 63/92 (68%)
 Frame = -3

Query: 290 GPTVSINFTKQPFIEDAGPRKIKSVGFTTMSGAEIVKAAELHVYETSLFMFPDRKPCPHG 111
           G    +  TK+P+++D G  +IKS+ F+T SG E+  +AE HVY   ++   +RKP P G
Sbjct: 10  GEAQKLRCTKEPYVDDDGTHRIKSMRFSTFSGGEVRTSAEAHVYNGWIYD-ENRKPAPGG 68

Query: 110 ILDTHLGTSYKIGQCATCNGKFSDCPGHYGHV 15
           +LDT +G + K G+C TC+G +++CPGH+G++
Sbjct: 69  LLDTRMGAANKFGECTTCHGSYTECPGHFGYI 100