BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00028781
         (632 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra...   242   6e-62
gb|EOY28254.1| DNA-directed RNA polymerase family protein isofor...   227   2e-57
gb|EOY28253.1| DNA-directed RNA polymerase family protein isofor...   227   2e-57
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not...   226   3e-57
gb|AAY85204.1| RNA polymerase II second largest subunit [Dilleni...   226   3e-57
gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbert...   226   4e-57
gb|AAY85215.1| RNA polymerase II second largest subunit [Hibbert...   226   4e-57
gb|AAY85206.1| RNA polymerase II second largest subunit [Embothr...   226   4e-57
gb|AAY85214.1| RNA polymerase II second largest subunit [Hibbert...   226   4e-57
gb|AAY85234.1| RNA polymerase II second largest subunit [Sarrace...   226   4e-57
gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia ...   226   5e-57
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu...   226   5e-57
ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II su...   225   7e-57
ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citr...   225   7e-57
gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxi...   225   7e-57
emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [...   225   9e-57
gb|AFV74907.1| RNA polymerase II second largest subunit, partial...   225   9e-57
gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo...   225   9e-57
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su...   224   1e-56
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe...   224   1e-56

>gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score =  242 bits (618), Expect = 6e-62
 Identities = 132/205 (64%), Positives = 146/205 (71%), Gaps = 1/205 (0%)
 Frame = +1

Query: 4   LALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLVN 183
           LALMVYITVGSSA+PI              +SPAVI T TKVFVNGCWVGIHRN DQLVN
Sbjct: 1   LALMVYITVGSSANPILEFLEEWSTESFEEISPAVIPTATKVFVNGCWVGIHRNPDQLVN 60

Query: 184 TLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCCK 363
           TLR+LR +VDVNPEVG+VRDI LKELR+YTDYG+CSR        + V   +R +++   
Sbjct: 61  TLRQLRRQVDVNPEVGVVRDIPLKELRLYTDYGRCSR-------PLFVVKNQRLLIRKPD 113

Query: 364 SGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTTY 540
             +    T  DE  GWH LVA G IEYVD       MI MTINDLVQ+R HPEEAYTTTY
Sbjct: 114 IIRLQERTSSDE--GWHDLVARGFIEYVDTEEEETTMISMTINDLVQARRHPEEAYTTTY 171

Query: 541 THCEIHPYLILGACASIIPFPDHNQ 615
           THCEIHP LILG CASIIPFPDHNQ
Sbjct: 172 THCEIHPSLILGVCASIIPFPDHNQ 196


>gb|EOY28254.1| DNA-directed RNA polymerase family protein isoform 2 [Theobroma
           cacao]
          Length = 809

 Score =  227 bits (579), Expect = 2e-57
 Identities = 123/206 (59%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVG+HRN D LV
Sbjct: 178 NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLV 237

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
            TLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 238 TTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--------KQRLLIKK 289

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K   A    +  E  GWH LVA G IEY+D       MI MTINDLVQ+R +PEEAY+ T
Sbjct: 290 KDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSET 349

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 350 YTHCEIHPSLILGVCASIIPFPDHNQ 375


>gb|EOY28253.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
            cacao]
          Length = 1189

 Score =  227 bits (579), Expect = 2e-57
 Identities = 123/206 (59%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVG+HRN D LV
Sbjct: 528  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLV 587

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 588  TTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--------KQRLLIKK 639

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K   A    +  E  GWH LVA G IEY+D       MI MTINDLVQ+R +PEEAY+ T
Sbjct: 640  KDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARVNPEEAYSET 699

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 700  YTHCEIHPSLILGVCASIIPFPDHNQ 725


>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
          Length = 1193

 Score =  226 bits (577), Expect = 3e-57
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVGIHR+ D LV
Sbjct: 529  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLV 588

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 589  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--------KQRLLIKK 640

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            +  +A    +  E  GWH LV+NG IEY+D       MI MTINDLVQ+R +PEEAY+ T
Sbjct: 641  RDIRALQQRETPEEAGWHDLVSNGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSET 700

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 701  YTHCEIHPSLILGVCASIIPFPDHNQ 726


>gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score =  226 bits (577), Expect = 3e-57
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN D LV
Sbjct: 419  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLV 478

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 479  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 530

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K  +A    +  E  GWH LVA G IEYVD       MI MTINDLV +R +PEEAY+ T
Sbjct: 531  KDIRALQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSDT 590

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 591  YTHCEIHPSLILGVCASIIPFPDHNQ 616


>gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score =  226 bits (576), Expect = 4e-57
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN D LV
Sbjct: 424  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLV 483

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 484  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 535

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K  +A    +  E  GWH LVA G IEYVD       MI MTINDLV +R +PEEAY+ T
Sbjct: 536  KDIRALQQRESPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSDT 595

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 596  YTHCEIHPSLILGVCASIIPFPDHNQ 621


>gb|AAY85215.1| RNA polymerase II second largest subunit [Hibbertia cuneiformis]
          Length = 219

 Score =  226 bits (576), Expect = 4e-57
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN D LV
Sbjct: 13  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLV 72

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
            TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 73  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 124

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K  +A    +  E  GWH LVA G IEYVD       MI MTINDLV +R +PEEAY+ T
Sbjct: 125 KDIRALQQRESPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSDT 184

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 185 YTHCEIHPSLILGVCASIIPFPDHNQ 210


>gb|AAY85206.1| RNA polymerase II second largest subunit [Embothrium coccineum]
          Length = 706

 Score =  226 bits (576), Expect = 4e-57
 Identities = 119/206 (57%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN + LV
Sbjct: 424  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLV 483

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 484  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVD--------KQRLLIKK 535

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K  +A    +  +  GWH LVA G IEY+D       MI MTINDL+ +R HPEEAY+ T
Sbjct: 536  KDVRALQQRESPDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLISARLHPEEAYSET 595

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 596  YTHCEIHPSLILGVCASIIPFPDHNQ 621


>gb|AAY85214.1| RNA polymerase II second largest subunit [Hibbertia aspera]
          Length = 219

 Score =  226 bits (576), Expect = 4e-57
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN D LV
Sbjct: 13  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLV 72

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
            TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 73  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 124

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K  +A    +  E  GWH LVA G IEYVD       MI MTINDLV +R +PEEAY+ T
Sbjct: 125 KDIRALQQRESPEDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARINPEEAYSDT 184

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 185 YTHCEIHPSLILGVCASIIPFPDHNQ 210


>gb|AAY85234.1| RNA polymerase II second largest subunit [Sarracenia alata]
          Length = 213

 Score =  226 bits (576), Expect = 4e-57
 Identities = 122/206 (59%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A PI              +SP VI   TK+FVNGCW GIHRN D LV
Sbjct: 7   NLALMVYITVGSAAYPILEFLEEWGTDNFEEISPVVIPQATKIFVNGCWAGIHRNPDMLV 66

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
           NTLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 67  NTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--------KQRLLIKK 118

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K  +A    +  E  GWH LV+NG IEY+D       MI MTINDLV +R +PEEAY+ T
Sbjct: 119 KDIQALQQRETPEEGGWHDLVSNGYIEYIDTEEEETTMISMTINDLVSARLNPEEAYSET 178

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 179 YTHCEIHPSLILGVCASIIPFPDHNQ 204


>gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia phyllitidis]
          Length = 549

 Score =  226 bits (575), Expect = 5e-57
 Identities = 121/206 (58%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALM YITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHR  D LV
Sbjct: 15  NLALMAYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHREPDLLV 74

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
            TLR+LR +VDVN EVG+VRDI LKELR+YTDYG+CSR        + +   +R ++K  
Sbjct: 75  KTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSR-------PLFIVEKQRLLIK-- 125

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           KS      +KD    GWH LV  G IEYVD       MI MTI+DLV SR HPEEAY+ T
Sbjct: 126 KSDIRALQSKDTAEVGWHDLVTKGFIEYVDTEEEETTMISMTISDLVNSRNHPEEAYSDT 185

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP +ILG CASIIPFPDHNQ
Sbjct: 186 YTHCEIHPSMILGVCASIIPFPDHNQ 211


>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  226 bits (575), Expect = 5e-57
 Identities = 122/206 (59%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN + LV
Sbjct: 396 NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLV 455

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
           NTLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 456 NTLRKLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 507

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K  +A    +  E  GWH LVA G IEYVD       MI MTINDLV +R +PEEAY+ T
Sbjct: 508 KDIRALQQRETPEDGGWHDLVAKGYIEYVDTEEEETTMISMTINDLVTARLNPEEAYSET 567

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 568 YTHCEIHPSLILGVCASIIPFPDHNQ 593


>ref|XP_006487405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Citrus
            sinensis]
          Length = 1195

 Score =  225 bits (574), Expect = 7e-57
 Identities = 125/209 (59%), Positives = 138/209 (66%), Gaps = 4/209 (1%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVGIHR+ + LV
Sbjct: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSR---LAGHYSLRINVC*LKRHIL 351
             TLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR   +     L I     KR I+
Sbjct: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK----KRDII 646

Query: 352  KCCKSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAY 528
                   A    +  E  GWH LVA G IEY+D       MI MTINDLVQ+R HPEEAY
Sbjct: 647  -------ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699

Query: 529  TTTYTHCEIHPYLILGACASIIPFPDHNQ 615
              TYTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728


>ref|XP_006423594.1| hypothetical protein CICLE_v10027701mg [Citrus clementina]
            gi|557525528|gb|ESR36834.1| hypothetical protein
            CICLE_v10027701mg [Citrus clementina]
          Length = 1195

 Score =  225 bits (574), Expect = 7e-57
 Identities = 125/209 (59%), Positives = 138/209 (66%), Gaps = 4/209 (1%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVGIHR+ + LV
Sbjct: 531  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 590

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSR---LAGHYSLRINVC*LKRHIL 351
             TLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR   +     L I     KR I+
Sbjct: 591  KTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIK----KRDII 646

Query: 352  KCCKSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAY 528
                   A    +  E  GWH LVA G IEY+D       MI MTINDLVQ+R HPEEAY
Sbjct: 647  -------ALQQRESPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAY 699

Query: 529  TTTYTHCEIHPYLILGACASIIPFPDHNQ 615
              TYTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 700  ADTYTHCEIHPSLILGVCASIIPFPDHNQ 728


>gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score =  225 bits (574), Expect = 7e-57
 Identities = 121/206 (58%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN D LV
Sbjct: 424  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLV 483

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 484  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 535

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K  +A    +  E  GWH LVA G IEYVD       MI MTINDL+ +R +PEEAY+ T
Sbjct: 536  KDIQALQQRESHEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLITARLNPEEAYSET 595

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 596  YTHCEIHPSLILGVCASIIPFPDHNQ 621


>emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
           Oxelman 2319]
          Length = 627

 Score =  225 bits (573), Expect = 9e-57
 Identities = 121/206 (58%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN D LV
Sbjct: 14  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLV 73

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
            TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 74  RTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 125

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K   A    +  + FGWH LVA G IEYVD       MI MTINDL+ SR +P+EAY+ T
Sbjct: 126 KDILALQQREYTDEFGWHDLVAKGYIEYVDTEEEETTMISMTINDLMNSRLNPDEAYSET 185

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 186 YTHCEIHPSLILGVCASIIPFPDHNQ 211


>gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
          Length = 568

 Score =  225 bits (573), Expect = 9e-57
 Identities = 123/206 (59%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1   NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
           NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVGIHR+ D LV
Sbjct: 7   NLALMVYITVGSAAYPILEFLEKWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLV 66

Query: 181 NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
            TLR LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 67  RTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVE--------KQRLLIKK 118

Query: 361 KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
           K  +A    +  E  GWH LVA G IEY+D       MI MTINDLV +R +PEEAYT T
Sbjct: 119 KDIQALQQRESAEEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVTARINPEEAYTET 178

Query: 538 YTHCEIHPYLILGACASIIPFPDHNQ 615
           YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 179 YTHCEIHPSLILGVCASIIPFPDHNQ 204


>gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  225 bits (573), Expect = 9e-57
 Identities = 121/206 (58%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A+PI              +SPAVI   TK+FVNGCWVGIHRN + LV
Sbjct: 416  NLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLV 475

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG++RDI LKELR+YTDYG+CSR              K+ +L   
Sbjct: 476  KTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE--------KQRLLIKK 527

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K  +A    +  E  GWH LVA G IEYVD       MI MTINDLV +R +PEEAY+ T
Sbjct: 528  KDIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLNPEEAYSET 587

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 588  YTHCEIHPSLILGVCASIIPFPDHNQ 613


>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Fragaria
            vesca subsp. vesca]
          Length = 1191

 Score =  224 bits (572), Expect = 1e-56
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVGIHR+ + LV
Sbjct: 528  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 587

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 588  RTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVD--------KQRLLIKK 639

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K   A    ++ E  GWH LVA G IEY+D       MI MTINDLVQ+R +PEEAY+ T
Sbjct: 640  KDIHALQQRENPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDT 699

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 700  YTHCEIHPSLILGVCASIIPFPDHNQ 725


>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
          Length = 1192

 Score =  224 bits (572), Expect = 1e-56
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 1/206 (0%)
 Frame = +1

Query: 1    NLALMVYITVGSSASPIXXXXXXXXXXXXXXVSPAVILTVTKVFVNGCWVGIHRNSDQLV 180
            NLALMVYITVGS+A PI              +SPAVI   TK+FVNGCWVGIHR+ + LV
Sbjct: 528  NLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLV 587

Query: 181  NTLRELR*KVDVNPEVGIVRDILLKELRIYTDYGQCSRLAGHYSLRINVC*LKRHILKCC 360
             TLR+LR +VDVN EVG+VRDI LKELRIYTDYG+CSR              K+ +L   
Sbjct: 588  KTLRKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVD--------KQRLLIKK 639

Query: 361  KSGKATTSTKDDEPFGWHSLVANGCIEYVD-XXXXXXMIFMTINDLVQSRTHPEEAYTTT 537
            K   A    ++ E  GWH LVA G IEY+D       MI MTINDLVQ+R +PEEAY+ T
Sbjct: 640  KDIHALQQRENPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDT 699

Query: 538  YTHCEIHPYLILGACASIIPFPDHNQ 615
            YTHCEIHP LILG CASIIPFPDHNQ
Sbjct: 700  YTHCEIHPSLILGVCASIIPFPDHNQ 725