BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00028425
         (518 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   166   3e-39
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   164   9e-39
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   164   9e-39
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   164   9e-39
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...   164   1e-38
gb|AFP55546.1| gag-pol polyprotein [Rosa rugosa]                      164   1e-38
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   162   4e-38
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...   162   4e-38
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   162   4e-38
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   162   6e-38
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   162   6e-38
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   161   1e-37
gb|ABA95797.1| retrotransposon protein, putative, unclassified [...   160   2e-37
gb|AAB82754.1| retrofit [Oryza longistaminata]                        159   3e-37
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           159   4e-37
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           159   4e-37
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   159   5e-37
ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa In...   158   6e-37
gb|ABA99232.1| retrotransposon protein, putative, Ty1-copia subc...   158   6e-37
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  158   8e-37

>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  166 bits (420), Expect = 3e-39
 Identities = 84/166 (50%), Positives = 113/166 (68%), Gaps = 3/166 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L   +TW L+ P K + VIGC+WVY IK   +G +D+YK RLVAK + Q+ GID  
Sbjct: 824  EYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYD 883

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNEEL-- 355
            +TF+P     TIR++L +A ++GW++  LDV+NAFLHG L EEVYM QPPGY  + +L  
Sbjct: 884  DTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYEDSTKLNY 943

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
             CKL K+LYGLK APR  Y+RL+N L + GF+  K D +L++  KG
Sbjct: 944  VCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKG 989


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  164 bits (416), Expect = 9e-39
 Identities = 83/167 (49%), Positives = 113/167 (67%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L   +TW L+ P + + +IGC+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 964  EYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYE 1023

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQ--NEEL 355
            +TF+P     TIR++L LA +KGW++  LDV+NAFLHG L EEVYM+QPPG+        
Sbjct: 1024 DTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHH 1083

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
             CKL K+LYGLK APR  ++RL+  L + GFK  K D +L++L KG+
Sbjct: 1084 VCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGD 1130


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  164 bits (416), Expect = 9e-39
 Identities = 83/167 (49%), Positives = 113/167 (67%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L   +TW L+ P + + +IGC+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 686  EYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYE 745

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQ--NEEL 355
            +TF+P     TIR++L LA +KGW++  LDV+NAFLHG L EEVYM+QPPG+        
Sbjct: 746  DTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHH 805

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
             CKL K+LYGLK APR  ++RL+  L + GFK  K D +L++L KG+
Sbjct: 806  VCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGD 852


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  164 bits (416), Expect = 9e-39
 Identities = 83/167 (49%), Positives = 113/167 (67%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L   +TW L+ P + + +IGC+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 957  EYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYE 1016

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQ--NEEL 355
            +TF+P     TIR++L LA +KGW++  LDV+NAFLHG L EEVYM+QPPG+        
Sbjct: 1017 DTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEEVYMLQPPGFEDPTKPHH 1076

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
             CKL K+LYGLK APR  ++RL+  L + GFK  K D +L++L KG+
Sbjct: 1077 VCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFLNKGD 1123


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score =  164 bits (415), Expect = 1e-38
 Identities = 80/165 (48%), Positives = 110/165 (66%), Gaps = 1/165 (0%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E + L   +TW L+   K + +I C+WVY +K   +G +D+YK RLVAK F Q+ GID +
Sbjct: 805  EYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKQKADGSLDRYKARLVAKGFKQRYGIDYE 864

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKLEE-VYMIQPPGYNQNEELAC 361
            +TF+P     TIR +L +A ++GW +  LDV+NAFLHG LEE V+M QPPGY Q +   C
Sbjct: 865  DTFSPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVC 924

Query: 362  KLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
            KL K+LYGLK APR  Y+RL+  L   GFK  K D +L++ +KG+
Sbjct: 925  KLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGD 969


>gb|AFP55546.1| gag-pol polyprotein [Rosa rugosa]
          Length = 1180

 Score =  164 bits (415), Expect = 1e-38
 Identities = 82/152 (53%), Positives = 104/152 (68%), Gaps = 3/152 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E+  L    TWEL+  P+ K+ +GCRWVYT+KH  +G +D+YK RLVAK + QK G+D  
Sbjct: 689  EMDALEKNCTWELVSLPQGKKTVGCRWVYTVKHNSDGSVDRYKARLVAKGYTQKYGVDYD 748

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGY--NQNEEL 355
            ETFAP   I TIR+LL LA N  W +   DVKNAFLHG L EEVYM  PPGY  +  E++
Sbjct: 749  ETFAPVAKINTIRVLLSLAANLDWPLQQFDVKNAFLHGDLHEEVYMDLPPGYGTSTGEQV 808

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFK 451
             CKLKKSLYGLK +PR  + R T F++  G++
Sbjct: 809  VCKLKKSLYGLKQSPRAWFGRFTKFMKKIGYR 840


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
           gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
           Japonica Group]
          Length = 821

 Score =  162 bits (410), Expect = 4e-38
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5   EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
           E   L + +TW L+ P K + VI C+WVY +K   +G +D+YK RLVAK F Q+ GID +
Sbjct: 326 EYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYE 385

Query: 185 ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNE--EL 355
           +TF+P     TIR++L LA ++GW++  LDVKNAFLHG L EEVYM QPPGY +      
Sbjct: 386 DTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMEQPPGYEKKSMPNY 445

Query: 356 ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
            CKL K+LYGLK APR  Y+RL+  L   GF   K D +L++  KG+
Sbjct: 446 VCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQ 492


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1241

 Score =  162 bits (410), Expect = 4e-38
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L + +TW L+ P K + VI C+WVY +K   +G +D+YK RLVAK F Q+ GID +
Sbjct: 850  EYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYE 909

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNE--EL 355
            +TF+P     TIR++L LA ++GW++  LDVKNAFLHG L EEVYM QPPGY +      
Sbjct: 910  DTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNY 969

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
             CKL K+LYGLK APR  Y+RL+  L   GF   K D +L++  KG+
Sbjct: 970  VCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQ 1016


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  162 bits (410), Expect = 4e-38
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L + +TW L+ P K + VI C+WVY +K   +G +D+YK RLVAK F Q+ GID +
Sbjct: 904  EYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYE 963

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNE--EL 355
            +TF+P     TIR++L LA ++GW++  LDVKNAFLHG L EEVYM QPPGY +      
Sbjct: 964  DTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNY 1023

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
             CKL K+LYGLK APR  Y+RL+  L   GF   K D +L++  KG+
Sbjct: 1024 VCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQ 1070


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  162 bits (409), Expect = 6e-38
 Identities = 79/165 (47%), Positives = 109/165 (66%), Gaps = 1/165 (0%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E + L   +TW L+   K + +I C+WVY +K   +G +D+YK R+VAK F Q+ GID +
Sbjct: 943  EYQALMKNKTWHLVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGIDYE 1002

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKLEE-VYMIQPPGYNQNEELAC 361
            +TF P     TIR +L +A ++GW +  LDV+NAFLHG LEE V+M QPPGY Q +   C
Sbjct: 1003 DTFNPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVC 1062

Query: 362  KLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
            KL K+LYGLK APR  Y+RL+  L   GFK  K D +L++ +KG+
Sbjct: 1063 KLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGD 1107


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  162 bits (409), Expect = 6e-38
 Identities = 83/167 (49%), Positives = 111/167 (66%), Gaps = 3/167 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L + +TW L+ P K + VI C+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 758  EFMALQNNKTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYE 817

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNE--EL 355
            +TF+P     TIR++L +A +KGW +  LDV+NAFLHG L EEVYM QPPGY  +     
Sbjct: 818  DTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGY 877

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
             CKL K+LYGLK APR  Y+RL+  L + GF+  K D +L++  KG+
Sbjct: 878  VCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGD 924


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  161 bits (407), Expect = 1e-37
 Identities = 79/165 (47%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E + L   +TW  +   K + +I C+WVY +K   +G +D+YK RLVAK F Q+ GID +
Sbjct: 543  EYQALMKNKTWHRVPSKKGQNIIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYE 602

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKLEE-VYMIQPPGYNQNEELAC 361
            +TF P     TIR +L +A ++GW +  LDV+NAFLHG LEE V+M QPPGY Q +   C
Sbjct: 603  DTFRPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEEDVFMRQPPGYEQKDGYVC 662

Query: 362  KLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
            KL K+LYGLK APR  Y+RL+  L   GFK  K D +L++ +KG+
Sbjct: 663  KLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGD 707


>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1588

 Score =  160 bits (405), Expect = 2e-37
 Identities = 79/167 (47%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
 Frame = +2

Query: 2    KEIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID* 181
            +E++ L   +TWEL+K P  K  +GC+WV+T+K  P G++D+YK RLVAK + Q  GID 
Sbjct: 1097 EELRALEKNKTWELVKLPMGKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGIDY 1156

Query: 182  KETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNEEL- 355
             ETFAP   + T+R+L+  A N GW +  LDVKNAFLHG L EEVYM  PPG+  ++ + 
Sbjct: 1157 DETFAPVAKMSTVRILISCAVNFGWPLHQLDVKNAFLHGDLQEEVYMEIPPGFGNSQTVG 1216

Query: 356  -ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
              C+LKKSLYGLK +PR  + R    L N G+     D  ++Y  +G
Sbjct: 1217 KVCRLKKSLYGLKQSPRAWFDRFRRALCNMGYSQCNGDHTVFYRHRG 1263


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  159 bits (403), Expect = 3e-37
 Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L   +TW L+   K + +IGC+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 956  EYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYE 1015

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYNQNE--EL 355
            +TF+P     TIR++L +A ++GW++  LDV+NAFLHG L EEVYM QPPG+  +   + 
Sbjct: 1016 DTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESSSKPDY 1075

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
             CKL K+LYGLK APR  Y+RL+  L   GF+  K D +L++L KG
Sbjct: 1076 VCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKG 1121


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  159 bits (402), Expect = 4e-37
 Identities = 85/168 (50%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
 Frame = +2

Query: 2    KEIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID* 181
            +E   L    TW L+  P  K +I C+WV+ IK   +G ID+YK RLVAK F Q+ GID 
Sbjct: 656  EEYNALIKNNTWHLVPAPIGKYIIDCKWVFKIKRKSDGTIDRYKARLVAKGFKQRYGIDY 715

Query: 182  KETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGY--NQNEE 352
            ++TF+P   I TIR++L LA +KGW++  LDVKNAFLHG L EEVYM QPPGY    +  
Sbjct: 716  EDTFSPVVKISTIRLVLSLAVSKGWSIRQLDVKNAFLHGILEEEVYMKQPPGYVDKSSSY 775

Query: 353  LACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKGE 496
              CKL K+LYGLK APR  Y RL + L   GF   K D +L++  KG+
Sbjct: 776  YVCKLDKALYGLKQAPRAWYYRLYDKLCQLGFSASKADTSLFFYRKGD 823


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  159 bits (402), Expect = 4e-37
 Identities = 77/161 (47%), Positives = 111/161 (68%), Gaps = 3/161 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E++ +    TW L++P +   ++GCRWV+  K  P+G +DK K RLVAK F+Q++G+D  
Sbjct: 905  EMRTIHMLHTWSLVQPTEDMNILGCRWVFKTKLKPDGSVDKLKARLVAKGFHQEEGLDYL 964

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKLEE-VYMIQPPGYNQNEE--L 355
            ETF+P     TIR++L +AT KGWN+  LDV NAFLHG+L+E VYM+QPPG+   E+   
Sbjct: 965  ETFSPVVRTATIRLVLDVATAKGWNIKQLDVSNAFLHGELKEPVYMLQPPGFVDQEKPSY 1024

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLW 478
             C+L K+LYGLK APR  +  ++N+L + GF   K DP+L+
Sbjct: 1025 VCRLTKALYGLKQAPRAWFDTISNYLLDFGFSCSKSDPSLF 1065


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  159 bits (401), Expect = 5e-37
 Identities = 82/166 (49%), Positives = 108/166 (65%), Gaps = 3/166 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L    TW L+ P + + VI C+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 942  EYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYE 1001

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYN--QNEEL 355
            +TF+P     TIR++L +A ++GW +  LDV+NAFLHG L EEVYM QPPGY      + 
Sbjct: 1002 DTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEEVYMKQPPGYENPSTPDY 1061

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
             CKL K+LYGLK APR  Y+RL+  L + GFK  K D +L++  KG
Sbjct: 1062 VCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKG 1107


>ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa Indica Group]
           gi|289065044|ref|YP_003433855.1| hypothetical protein
           OrrupM_p18 [Oryza rufipogon] gi|74100111|gb|AAZ99275.1|
           hypothetical protein (mitochondrion) [Oryza sativa
           Indica Group] gi|74100166|gb|AAZ99329.1| hypothetical
           protein (mitochondrion) [Oryza sativa Japonica Group]
           gi|74100220|gb|AAZ99382.1| hypothetical protein
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|285026126|dbj|BAI67959.1| hypothetical protein [Oryza
           rufipogon] gi|285026155|dbj|BAI67987.1| hypothetical
           protein [Oryza sativa Indica Group]
           gi|353685219|gb|AER12982.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|353685288|gb|AER13050.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277649|gb|AEZ03755.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277659|gb|AEZ03764.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|528540457|dbj|BAN67511.1| hypothetical protein
           (mitochondrion) [Oryza rufipogon]
           gi|528540460|dbj|BAN67513.1| hypothetical protein
           (mitochondrion) [Oryza rufipogon]
          Length = 490

 Score =  158 bits (400), Expect = 6e-37
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +2

Query: 2   KEIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID* 181
           +E   L    TW L+   + + +I C+WVY IK   +G ID+YK RLVAK F Q+ GID 
Sbjct: 3   EEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGIDY 62

Query: 182 KETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKLEE-VYMIQPPGYNQNEEL- 355
           +ETF+P     TIR++L LA + GW++  LDV+NAFLHG LEE VYM QPPGY    +L 
Sbjct: 63  EETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSKLD 122

Query: 356 -ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
             CKL K+LYGLK APR  ++RL+  L+N GF+  K D +L++  KG
Sbjct: 123 YVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKG 169


>gb|ABA99232.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 308

 Score =  158 bits (400), Expect = 6e-37
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +2

Query: 2   KEIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID* 181
           +E   L    TW L+   + + +I C+WVY IK   +G ID+YK RLVAK F Q+ GID 
Sbjct: 3   EEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGIDY 62

Query: 182 KETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKLEE-VYMIQPPGYNQNEEL- 355
           +ETF+P     TIR++L LA + GW++  LDV+NAFLHG LEE VYM QPPGY    +L 
Sbjct: 63  EETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSKLD 122

Query: 356 -ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
             CKL K+LYGLK APR  ++RL+  L+N GF+  K D +L++  KG
Sbjct: 123 YVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKG 169


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  158 bits (399), Expect = 8e-37
 Identities = 82/166 (49%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
 Frame = +2

Query: 5    EIKMLSDRETWELIKPPKYKEVIGCRWVYTIKHLPNGEIDKYKVRLVAKDFYQKKGID*K 184
            E   L   +TW L+   K + VIGC+WVY IK   +G +D+YK RLVAK F Q+ GID +
Sbjct: 947  EYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYE 1006

Query: 185  ETFAPTTSIITIRMLLKLATNKGWNVFHLDVKNAFLHGKL-EEVYMIQPPGYN--QNEEL 355
            +TF+P     TIR++L +A ++GW++  LDV+NAFLHG L EEVYM QPPG+        
Sbjct: 1007 DTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESFSKPNY 1066

Query: 356  ACKLKKSLYGLK*APRIRYTRLTNFLRNKGFKILK*DPNLWYLTKG 493
             CKL K+LYGLK APR  Y+RL+  L   GF+  K D +L++L KG
Sbjct: 1067 VCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKG 1112