BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00028336
         (464 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX94216.1| RNA-directed DNA polymerase [Theobroma cacao]           59   6e-12
gb|EOY01054.1| RNA-directed DNA polymerase (Reverse transcriptas...    59   8e-12
gb|EOX94716.1| RNA-directed DNA polymerase (Reverse transcriptas...    59   8e-12
gb|EOY03806.1| RNA-directed DNA polymerase [Theobroma cacao]           59   8e-12
ref|XP_003635949.1| hypothetical protein MTR_020s0003 [Medicago ...    54   6e-11
gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptas...    52   2e-10
gb|AAQ56455.1| putative integrase [Oryza sativa Japonica Group]        54   2e-10
gb|EOY26501.1| RNA-directed DNA polymerase (Reverse transcriptas...    57   2e-10
dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica G...    50   4e-10
gb|EOY19960.1| RNA-directed DNA polymerase, putative [Theobroma ...    59   5e-10
ref|XP_004506193.1| PREDICTED: uncharacterized protein LOC101494...    50   5e-10
gb|ABD63162.1| RNase H family protein [Asparagus officinalis]          54   5e-10
ref|XP_004490487.1| PREDICTED: uncharacterized protein LOC101489...    50   5e-10
ref|XP_004510004.1| PREDICTED: uncharacterized protein LOC101511...    49   1e-09
ref|XP_004510002.1| PREDICTED: uncharacterized protein LOC101510...    50   1e-09
gb|AAM74403.1|AC120497_3 Putative retroelement [Oryza sativa Jap...    50   1e-09
gb|ABG65999.1| retrotransposon protein, putative, unclassified [...    50   1e-09
gb|AAM01055.1|AC091735_28 putative pol polyprotein [Oryza sativa...    50   1e-09
gb|EOY10467.1| RNA-directed DNA polymerase (Reverse transcriptas...    50   2e-09
gb|EOY22161.1| RNA-directed DNA polymerase (Reverse transcriptas...    54   2e-09

>gb|EOX94216.1| RNA-directed DNA polymerase [Theobroma cacao]
          Length = 460

 Score = 58.9 bits (141), Expect(2) = 6e-12
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 462 YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
           ++LVYGME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ 
Sbjct: 322 FSLVYGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLTALCHGQLYQK 381

Query: 282 RISREYNQMHNCRYFRIGEFVLER 211
           R+ R Y++  + R FR GE VL+R
Sbjct: 382 RMMRAYDKKAHSRQFREGELVLKR 405



 Score = 37.0 bits (84), Expect(2) = 6e-12
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 206 PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           P   D  G +TPN  GP+ V   + G A +L + +G +   PVN   +K++
Sbjct: 408 PNQHDPRGKWTPNWEGPFVVKKAFSGGALILAEMDGREFSNPVNADAVKKY 458


>gb|EOY01054.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
            [Theobroma cacao]
          Length = 1047

 Score = 58.9 bits (141), Expect(2) = 8e-12
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ 
Sbjct: 909  FSLVYGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLTALCHGQLYQK 968

Query: 282  RISREYNQMHNCRYFRIGEFVLER 211
            R+ R Y++  + R FR GE VL+R
Sbjct: 969  RMMRAYDKKAHSRQFREGELVLKR 992



 Score = 36.6 bits (83), Expect(2) = 8e-12
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 206  PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            P   D  G +TPN  GP+ V   + G A +L + +G +   PVN   +K++
Sbjct: 995  PNQHDLRGKWTPNWEGPFVVKKAFSGGALILAEMDGREFSNPVNADAVKKY 1045


>gb|EOX94716.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
           [Theobroma cacao]
          Length = 642

 Score = 58.9 bits (141), Expect(2) = 8e-12
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 462 YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
           ++LVYGME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ 
Sbjct: 504 FSLVYGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLTALCHGQLYQK 563

Query: 282 RISREYNQMHNCRYFRIGEFVLER 211
           R+ R Y++  + R FR GE VL+R
Sbjct: 564 RMMRAYDKKAHSRQFREGELVLKR 587



 Score = 36.6 bits (83), Expect(2) = 8e-12
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 206 PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           P   D  G +TPN  GP+ V   + G A +L + +G +   PVN   +K++
Sbjct: 590 PNQHDLRGKWTPNWEGPFVVKKAFSGGALILAEMDGREFSNPVNADAVKKY 640


>gb|EOY03806.1| RNA-directed DNA polymerase [Theobroma cacao]
          Length = 386

 Score = 58.9 bits (141), Expect(2) = 8e-12
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 462 YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
           ++LVYGME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ 
Sbjct: 248 FSLVYGMEAVLPIEVEIPSLRVLKEVQLEETEWVNARYEQLNLIEEKRLTALCHGQLYQK 307

Query: 282 RISREYNQMHNCRYFRIGEFVLER 211
           R+ R Y++  + R FR GE VL+R
Sbjct: 308 RMMRAYDKKAHSRQFREGELVLKR 331



 Score = 36.6 bits (83), Expect(2) = 8e-12
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 206 PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           P   D  G +TPN  GP+ +   + G A +L + +G +   PVN   +K++
Sbjct: 334 PNQHDPRGKWTPNWEGPFVIKKAFSGGALILAEMDGREFSNPVNADAVKKY 384


>ref|XP_003635949.1| hypothetical protein MTR_020s0003 [Medicago truncatula]
           gi|355501884|gb|AES83087.1| hypothetical protein
           MTR_020s0003 [Medicago truncatula]
          Length = 602

 Score = 54.3 bits (129), Expect(2) = 6e-11
 Identities = 29/85 (34%), Positives = 47/85 (55%)
 Frame = -3

Query: 462 YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
           ++LVYGME VLP+E E+ SLRV+ E   +               E +R  A+   + YQ 
Sbjct: 364 FSLVYGMEAVLPVEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQA 423

Query: 282 RISREYNQMHNCRYFRIGEFVLERK 208
           R+   +++  + R F++GE VL+R+
Sbjct: 424 RMKTAFDKKVHPREFKVGELVLKRR 448



 Score = 38.1 bits (87), Expect(2) = 6e-11
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 212 ENPIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           + P PR   G +TPN  GPY V   + G A +L   +G++   PVN   +K++
Sbjct: 451 QQPDPR---GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 500


>gb|ABN06136.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1146

 Score = 52.4 bits (124), Expect(2) = 2e-10
 Identities = 29/85 (34%), Positives = 46/85 (54%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLP E E+ SLRV+ E   +               E +R  A+   + YQ 
Sbjct: 1008 FSLVYGMEAVLPSEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQA 1067

Query: 282  RISREYNQMHNCRYFRIGEFVLERK 208
            R+   +++  + R F++GE VL+R+
Sbjct: 1068 RMKTAFDKKVHPREFKVGELVLKRR 1092



 Score = 38.1 bits (87), Expect(2) = 2e-10
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -1

Query: 212  ENPIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            + P PR   G +TPN  GPY V   + G A +L   +G++   PVN   +K++
Sbjct: 1095 QQPDPR---GKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 1144


>gb|AAQ56455.1| putative integrase [Oryza sativa Japonica Group]
          Length = 385

 Score = 53.5 bits (127), Expect(2) = 2e-10
 Identities = 27/81 (33%), Positives = 45/81 (55%)
 Frame = -3

Query: 462 YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
           + LVYG EVVLP+E  + SLR +K+ + + +               +R +AL  IEK + 
Sbjct: 239 FELVYGQEVVLPVEVNLSSLRYIKQDDLSSEDYKTLMGDNLDGVIDERLRALEEIEKEKK 298

Query: 282 RISREYNQMHNCRYFRIGEFV 220
           R+++ YN+    + F+IG+ V
Sbjct: 299 RVAKAYNKRVKAKLFQIGDLV 319



 Score = 37.0 bits (84), Expect(2) = 2e-10
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -1

Query: 185 GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           G ++P+  GPY+V    +G+AY LE  +G + +  +N  YLK++
Sbjct: 334 GKWSPSWEGPYQVCGIVRGNAYFLETLQGERFQRAINGKYLKKY 377


>gb|EOY26501.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
           [Theobroma cacao]
          Length = 353

 Score = 57.4 bits (137), Expect(2) = 2e-10
 Identities = 35/84 (41%), Positives = 47/84 (55%)
 Frame = -3

Query: 462 YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
           ++LVYGME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ 
Sbjct: 215 FSLVYGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNACYEQLNLIEEKRLTALCHGQLYQK 274

Query: 282 RISREYNQMHNCRYFRIGEFVLER 211
           R+ R Y +  + R FR GE VL+R
Sbjct: 275 RMIRAYGKKAHPRQFREGELVLKR 298



 Score = 33.1 bits (74), Expect(2) = 2e-10
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 206 PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           P   D  G +T N  GP+ V   + G A +L + +G +   PVN   +K++
Sbjct: 301 PNQHDPRGKWTLNWEGPFVVKKAFSGGALILAEMDGREFSNPVNADAVKKY 351


>dbj|BAB08213.2| unnamed protein product [Oryza sativa Japonica Group]
          Length = 2876

 Score = 49.7 bits (117), Expect(2) = 4e-10
 Identities = 31/82 (37%), Positives = 42/82 (51%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            Y+LVYG E VLP+E ++ SLRV      T               E +R  AL N+E Y+ 
Sbjct: 2736 YSLVYGNEAVLPLEIQLPSLRVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQ 2795

Query: 282  RISREYNQMHNCRYFRIGEFVL 217
             + R Y+++   R FR GE VL
Sbjct: 2796 NMVRAYDKLVKQRVFRKGELVL 2817



 Score = 40.0 bits (92), Expect(2) = 4e-10
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 185  GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            G F P   GPY +   Y G AY L D +G Q   P+N  +LK++
Sbjct: 2831 GKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPINGRFLKKY 2874


>gb|EOY19960.1| RNA-directed DNA polymerase, putative [Theobroma cacao]
          Length = 2200

 Score = 58.9 bits (141), Expect(2) = 5e-10
 Identities = 35/84 (41%), Positives = 48/84 (57%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ 
Sbjct: 1685 FSLVYGMEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLTALCHGQLYQK 1744

Query: 282  RISREYNQMHNCRYFRIGEFVLER 211
            R+ R Y++  + R FR GE VL+R
Sbjct: 1745 RMMRAYDKKAHSRQFREGELVLKR 1768



 Score = 30.4 bits (67), Expect(2) = 5e-10
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 215  RENPIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREP 81
            R  P   D  G +TPN  GP+ V   +   A +L + +GM+   P
Sbjct: 1768 RTLPNQHDPRGKWTPNWEGPFVVKKAFSRGALILAEMDGMEFSNP 1812


>ref|XP_004506193.1| PREDICTED: uncharacterized protein LOC101494924 [Cicer arietinum]
          Length = 2008

 Score = 50.1 bits (118), Expect(2) = 5e-10
 Identities = 30/84 (35%), Positives = 44/84 (52%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLPIE E+ S++V+ E                   E +R  AL + + YQ 
Sbjct: 1870 FSLVYGMEAVLPIEVEIPSIKVLMETKLEEAEWVQSRYDQLNLIEEKRMIALCHGQLYQK 1929

Query: 282  RISREYNQMHNCRYFRIGEFVLER 211
            R+ + Y +    R FR GE VL++
Sbjct: 1930 RLKKAYEKKVRPREFREGELVLKK 1953



 Score = 39.3 bits (90), Expect(2) = 5e-10
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -1

Query: 206  PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            PI +D  G +TPN  GPY V   + G A +L + +G +   PVN   +K++
Sbjct: 1956 PIKKDSRGKWTPNYEGPYVVKKAFSGGALILAEMDGDELPLPVNSDAVKKY 2006


>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
          Length = 1189

 Score = 53.5 bits (127), Expect(2) = 5e-10
 Identities = 31/85 (36%), Positives = 44/85 (51%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYG E VLP+E ++ SLRV      T +             + +R +A   IE YQ 
Sbjct: 1049 FSLVYGCEAVLPLEIQIPSLRVAITTGLTEEEKHQRRLQELEALDDKRLQAQQQIELYQA 1108

Query: 282  RISREYNQMHNCRYFRIGEFVLERK 208
            RIS+ YN+    R F+ G+ VL  K
Sbjct: 1109 RISKAYNKKVKERIFKKGDLVLANK 1133



 Score = 35.8 bits (81), Expect(2) = 5e-10
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 185  GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            G F P   GP+ + + Y   AY L +QEG +   P+N  +LKR+
Sbjct: 1144 GKFNPKWEGPFVIESVYSNGAYRLINQEGDRLMMPINGKFLKRY 1187


>ref|XP_004490487.1| PREDICTED: uncharacterized protein LOC101489483 [Cicer arietinum]
          Length = 973

 Score = 50.1 bits (118), Expect(2) = 5e-10
 Identities = 30/84 (35%), Positives = 44/84 (52%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLPIE E+ S++V+ E                   E +R  AL + + YQ 
Sbjct: 835  FSLVYGMEAVLPIEVEIPSIKVLMETKLEEAEWVQSRYDQLNLIEEKRMIALCHGQLYQK 894

Query: 282  RISREYNQMHNCRYFRIGEFVLER 211
            R+ + Y +    R FR GE VL++
Sbjct: 895  RLKKAYEKKVRPREFREGELVLKK 918



 Score = 39.3 bits (90), Expect(2) = 5e-10
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -1

Query: 206  PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            PI +D  G +TPN  GPY V   + G A +L + +G +   PVN   +K++
Sbjct: 921  PIKKDSRGKWTPNYEGPYVVKKAFSGGALILAEMDGDELPLPVNSDAVKKY 971


>ref|XP_004510004.1| PREDICTED: uncharacterized protein LOC101511496 [Cicer arietinum]
          Length = 2016

 Score = 48.9 bits (115), Expect(2) = 1e-09
 Identities = 30/84 (35%), Positives = 44/84 (52%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLPIE E+ S++V+ E                   E +R  AL + + YQ 
Sbjct: 1878 FSLVYGMEAVLPIEVEIPSIKVLMETKLEEAEWVQSRYDQLNLIEEKRMIALCHGQLYQK 1937

Query: 282  RISREYNQMHNCRYFRIGEFVLER 211
            R+ + Y +    R FR GE VL++
Sbjct: 1938 RLKKAYEKKVCPREFREGELVLKK 1961



 Score = 39.3 bits (90), Expect(2) = 1e-09
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -1

Query: 206  PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            PI +D  G +TPN  GPY V   + G A +L + +G +   PVN   +K++
Sbjct: 1964 PIKKDSRGKWTPNYEGPYVVKKAFSGGALILAEMDGDELPLPVNSDAVKKY 2014


>ref|XP_004510002.1| PREDICTED: uncharacterized protein LOC101510858 [Cicer arietinum]
          Length = 2210

 Score = 49.7 bits (117), Expect(2) = 1e-09
 Identities = 30/84 (35%), Positives = 44/84 (52%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            ++LVYGME VLPIE E+ SLRV+ E                   E +R  AL + + YQ 
Sbjct: 2072 FSLVYGMEAVLPIEVEIPSLRVLMEAELEESEWIQTCFYQLNLIEEKRLAALCHGQLYQK 2131

Query: 282  RISREYNQMHNCRYFRIGEFVLER 211
            R+ + Y +    R F+ G+ VL++
Sbjct: 2132 RLKKAYEKKIRPREFQEGDLVLKK 2155



 Score = 38.1 bits (87), Expect(2) = 1e-09
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -1

Query: 206  PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            PI +D  G +TPN  GPY V   + G A +L + +G     PVN   +K +
Sbjct: 2158 PIQKDYRGKWTPNYEGPYVVKKAFSGGALILTNMDGKDLALPVNSDAVKNY 2208


>gb|AAM74403.1|AC120497_3 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1844

 Score = 50.4 bits (119), Expect(2) = 1e-09
 Identities = 26/81 (32%), Positives = 44/81 (54%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            + LVYG E VLP+E  + SLR +K+ + + +               +R KAL  IEK + 
Sbjct: 1698 FELVYGQEAVLPVEVNLGSLRNVKKDDLSSEDYKTLMGDNLDEVIDKRLKALEEIEKEKK 1757

Query: 282  RISREYNQMHNCRYFRIGEFV 220
            R+++ YN+    + F++G+ V
Sbjct: 1758 RVAKAYNKRVKAKLFQVGDLV 1778



 Score = 37.4 bits (85), Expect(2) = 1e-09
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -1

Query: 185  GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            G ++P+  GPY+V    +G+AY LE  +G + +  +N  YLK++
Sbjct: 1793 GKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQRAINGKYLKKY 1836


>gb|ABG65999.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1604

 Score = 50.4 bits (119), Expect(2) = 1e-09
 Identities = 26/81 (32%), Positives = 44/81 (54%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            + LVYG E VLP+E  + SLR +K+ + + +               +R KAL  IEK + 
Sbjct: 1458 FELVYGQEAVLPVEVNLGSLRNVKKDDLSSEDYKTLMGDNLDEVIDKRLKALEEIEKEKK 1517

Query: 282  RISREYNQMHNCRYFRIGEFV 220
            R+++ YN+    + F++G+ V
Sbjct: 1518 RVAKAYNKRVKAKLFQVGDLV 1538



 Score = 37.4 bits (85), Expect(2) = 1e-09
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -1

Query: 185  GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            G ++P+  GPY+V    +G+AY LE  +G + +  +N  YLK++
Sbjct: 1553 GKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQRAINGKYLKKY 1596


>gb|AAM01055.1|AC091735_28 putative pol polyprotein [Oryza sativa Japonica Group]
          Length = 1508

 Score = 50.4 bits (119), Expect(2) = 1e-09
 Identities = 26/81 (32%), Positives = 44/81 (54%)
 Frame = -3

Query: 462  YALVYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQG 283
            + LVYG E VLP+E  + SLR +K+ + + +               +R KAL  IEK + 
Sbjct: 1362 FELVYGQEAVLPVEVNLGSLRNVKKDDLSSEDYKTLMGDNLDEVIDKRLKALEEIEKEKK 1421

Query: 282  RISREYNQMHNCRYFRIGEFV 220
            R+++ YN+    + F++G+ V
Sbjct: 1422 RVAKAYNKRVKAKLFQVGDLV 1442



 Score = 37.4 bits (85), Expect(2) = 1e-09
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -1

Query: 185  GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
            G ++P+  GPY+V    +G+AY LE  +G + +  +N  YLK++
Sbjct: 1457 GKWSPSWEGPYRVCGIVRGNAYFLETLQGERFQRAINGKYLKKY 1500


>gb|EOY10467.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
           [Theobroma cacao]
          Length = 139

 Score = 49.7 bits (117), Expect(2) = 2e-09
 Identities = 31/78 (39%), Positives = 42/78 (53%)
 Frame = -3

Query: 444 MEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQGRISREY 265
           ME VLPIE E+ SLRV+KE+                  E +R  AL + + YQ R+ R Y
Sbjct: 1   MEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLTALCHRQLYQKRMMRAY 60

Query: 264 NQMHNCRYFRIGEFVLER 211
           ++  + R FR GE VL+R
Sbjct: 61  DKKAHSRQFREGELVLKR 78



 Score = 38.1 bits (87), Expect(2) = 2e-09
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 206 PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKR-F*IFCLK 36
           P   D  G +TPN  GP+ V   + G A +L + +G +   PVN   +K+ F IF LK
Sbjct: 81  PNQHDLRGKWTPNWEGPFVVKKAFSGGALILAEMDGREFSNPVNADAIKKYFKIFKLK 138


>gb|EOY22161.1| RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
           [Theobroma cacao]
          Length = 136

 Score = 53.9 bits (128), Expect(2) = 2e-09
 Identities = 33/81 (40%), Positives = 44/81 (54%)
 Frame = -3

Query: 453 VYGMEVVLPIEKEVKSLRVMKELNSTMQXXXXXXXXXXXXXESQRQKALHNIEKYQGRIS 274
           +YGME VLPIE E+ SLRV KE+                  E +R  AL + + YQ R+ 
Sbjct: 1   MYGMEAVLPIEVEIPSLRVFKEVQLEEAEWVNARYEQLNLIEEKRLTALCHGQLYQKRMM 60

Query: 273 REYNQMHNCRYFRIGEFVLER 211
           R Y++  + R FR GE VL+R
Sbjct: 61  RAYDKKAHSRQFREGELVLKR 81



 Score = 33.9 bits (76), Expect(2) = 2e-09
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 206 PIPRDQ*GMFTPN*RGPYKVIAKYKGDAYVLEDQEGMQEREPVNVFYLKRF 54
           P   D    +TPN  GP+ V   + G A +L + +G +   PVN   +K++
Sbjct: 84  PNQHDPRRKWTPNWEGPFVVKKAFSGGALILAEMDGREFSNPVNADAVKKY 134