BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00028297
         (498 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006838717.1| hypothetical protein AMTR_s00002p00251730 [A...    68   1e-09
ref|XP_006856878.1| hypothetical protein AMTR_s00055p00197790 [A...    67   2e-09
ref|XP_002531694.1| pentatricopeptide repeat-containing protein,...    58   2e-06
ref|XP_002326371.1| predicted protein [Populus trichocarpa] gi|5...    58   2e-06
ref|XP_004295353.1| PREDICTED: pentatricopeptide repeat-containi...    57   3e-06
ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containi...    56   6e-06

>ref|XP_006838717.1| hypothetical protein AMTR_s00002p00251730 [Amborella trichopoda]
           gi|548841223|gb|ERN01286.1| hypothetical protein
           AMTR_s00002p00251730 [Amborella trichopoda]
          Length = 904

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 33/84 (39%), Positives = 56/84 (66%)
 Frame = +2

Query: 221 IHQQGWEESKSFGKVARNLTSKHVGEVLNRVNNTRLALSFFRIMKTVPGYYHDINSHLVL 400
           I + GW+++  F K+A +LT  HV +VL  + +T++AL+FF  M  VPGY H++ S++ +
Sbjct: 54  IVRPGWQKNPFFKKLAFSLTPFHVCKVLELILDTKIALNFFFWMGQVPGYKHNLQSYVAI 113

Query: 401 LKKLVDSGLLWPAEKTRSMVIRLC 472
           L +L+ +G +  AEK R  +I+ C
Sbjct: 114 LDRLIHAGSMGMAEKIRITMIKSC 137


>ref|XP_006856878.1| hypothetical protein AMTR_s00055p00197790 [Amborella trichopoda]
           gi|548860812|gb|ERN18345.1| hypothetical protein
           AMTR_s00055p00197790 [Amborella trichopoda]
          Length = 940

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 36/100 (36%), Positives = 54/100 (54%)
 Frame = +2

Query: 197 IVEHVLDIIHQQGWEESKSFGKVARNLTSKHVGEVLNRVNNTRLALSFFRIMKTVPGYYH 376
           +V  V  II   GW+ S     +   LT  HV  VL+   + + AL FF  +   PGY H
Sbjct: 78  LVHRVCIIIRSFGWQHSVELKNLCPRLTHHHVANVLSLHKDAKSALQFFYWISQRPGYQH 137

Query: 377 DINSHLVLLKKLVDSGLLWPAEKTRSMVIRLCRDKAEMTR 496
            +++  VLLK L+   LL  AEK + ++I+ C D+AE+ +
Sbjct: 138 SLDTFFVLLKSLLREQLLKQAEKIQILMIKACSDEAEILK 177


>ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528670|gb|EEF30685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 821

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
 Frame = +2

Query: 182 TKSTKIVEHVLDIIHQQG-WEESKSFGKVARNLTSKHVGEVLNRVNNTRLALSFFRIMKT 358
           T    +V  VLD+I     W ++    ++A  L   HV +++N   NT  AL FF  +  
Sbjct: 37  TPFPNLVFKVLDLISTDPHWPKNPELNRLASTLRPHHVSKIINTHINTDTALQFFYWISK 96

Query: 359 VPGYYHDINSHLVLLKKLVDSGLLWPAEKTRSMVIRLCRDKAEMTR 496
              Y HD+   + +L +LV   +L PA+  R ++I+ CR++ E+ R
Sbjct: 97  RHFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKR 142


>ref|XP_002326371.1| predicted protein [Populus trichocarpa]
           gi|566175973|ref|XP_006381417.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
           gi|550336120|gb|ERP59214.1| pentatricopeptide
           repeat-containing family protein [Populus trichocarpa]
          Length = 726

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
 Frame = +2

Query: 206 HVLDIIHQQGWEESKSFGKVARNLTSKHVGEVLNRVN--NTRLALSFFRIMKTV-PGYYH 376
           H L I+    W+   SF K+  NL+  HV  + N     N  +AL FF  +  + PG+ H
Sbjct: 59  HFLSILSHPKWQRHPSFQKLIPNLSPSHVSSLFNNHPDLNPNIALQFFNSLPLIKPGFKH 118

Query: 377 DINSHLVLLKKLVDSGLLWPAEKTRSMVIRLC 472
            + SH  LLK L+ + L    EK R  +I+ C
Sbjct: 119 TVKSHSFLLKILIPNNLFGVGEKIRISMIKAC 150


>ref|XP_004295353.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Fragaria vesca subsp. vesca]
          Length = 927

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 30/101 (29%), Positives = 52/101 (51%)
 Frame = +2

Query: 188 STKIVEHVLDIIHQQGWEESKSFGKVARNLTSKHVGEVLNRVNNTRLALSFFRIMKTVPG 367
           S  +V  V DI+    WE+      +  NL + H+ +++    NT  AL FF  +     
Sbjct: 46  SPNLVSRVCDILGDPKWEKISELSGLIINLRTYHMVKIIQTHRNTDSALRFFFWVSRRKP 105

Query: 368 YYHDINSHLVLLKKLVDSGLLWPAEKTRSMVIRLCRDKAEM 490
           Y HD+N  + +L +LV   L  PA+  R ++++ CR++ E+
Sbjct: 106 YKHDMNCFVSMLDRLVREKLFGPADHVRLLLVKGCRNEEEL 146


>ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
           gi|449530677|ref|XP_004172320.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/101 (28%), Positives = 50/101 (49%)
 Frame = +2

Query: 194 KIVEHVLDIIHQQGWEESKSFGKVARNLTSKHVGEVLNRVNNTRLALSFFRIMKTVPGYY 373
           ++V  +  I+    WE S     +   L   HV  +L+  NNT   L FF  +     + 
Sbjct: 49  ELVSKISIILSSPTWERSSELSHLIPKLKPHHVVNLLDTHNNTESVLRFFHWVSRTHFFK 108

Query: 374 HDINSHLVLLKKLVDSGLLWPAEKTRSMVIRLCRDKAEMTR 496
           HD++  + +L +LV   L  PA+  R ++I+ CR++ E+ R
Sbjct: 109 HDMSCFVSMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKR 149