BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00027438
         (528 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR16520.1| unknown [Picea sitchensis]                              92   5e-17
ref|XP_004308698.1| PREDICTED: pentatricopeptide repeat-containi...    88   1e-15
ref|XP_004288861.1| PREDICTED: pentatricopeptide repeat-containi...    85   9e-15
gb|EOX98930.1| Pentatricopeptide repeat (PPR) superfamily protei...    84   1e-14
gb|EMJ23067.1| hypothetical protein PRUPE_ppa018370mg, partial [...    84   1e-14
ref|XP_001754449.1| predicted protein [Physcomitrella patens] gi...    84   1e-14
ref|NP_190904.1| pentatricopeptide repeat-containing protein [Ar...    84   2e-14
gb|EMJ02387.1| hypothetical protein PRUPE_ppa002996mg [Prunus pe...    83   3e-14
ref|XP_001775099.1| predicted protein [Physcomitrella patens] gi...    83   3e-14
gb|EOX96064.1| Tetratricopeptide repeat-like superfamily protein...    82   6e-14
gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygr...    82   7e-14
ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group] g...    82   7e-14
gb|EEE60271.1| hypothetical protein OsJ_13308 [Oryza sativa Japo...    82   7e-14
gb|AAT77022.1| putative PPR repeat protein [Oryza sativa Japonic...    82   7e-14
ref|XP_006580029.1| PREDICTED: pentatricopeptide repeat-containi...    82   1e-13
ref|XP_006849978.1| hypothetical protein AMTR_s00022p00156450 [A...    82   1e-13
gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygr...    82   1e-13
ref|XP_006384866.1| hypothetical protein POPTR_0004s21780g [Popu...    81   1e-13
dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japo...    81   1e-13
ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group] g...    81   1e-13

>gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score = 92.4 bits (228), Expect = 5e-17
 Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
 Frame = +2

Query: 149 KEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCK 328
           +   IS    IS   +NG +EEA+K  +  P+CNV+S+N +I+ Y++ G+   A+KL  +
Sbjct: 319 ERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQ 378

Query: 329 MQQNDIHPDEFTFSIILPACNSPRTLK---KIHALIILRGLLFDSYVESRLITMYVKHDC 499
           MQ  D+ P+  TF+I+LPAC +   L+   + H ++I  G   D  V + L+ MY K   
Sbjct: 379 MQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGS 438

Query: 500 MADARRIFD 526
           + DAR++FD
Sbjct: 439 IEDARKVFD 447



 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 40/116 (34%), Positives = 65/116 (56%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           +S +++ G+L EA +  ++ P  NV+S+  +I+AY +     EA+    +MQ   I P+ 
Sbjct: 107 VSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNH 166

Query: 359 FTFSIILPACNSPRTLKKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
           FTF+ ILPAC     L + H  I+  G   + +V + L+ MY K  C+  AR +FD
Sbjct: 167 FTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFD 222


>ref|XP_004308698.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Fragaria vesca subsp. vesca]
          Length = 769

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
 Frame = +2

Query: 26  QQGPVLRFLQLRREMRAIRLS-STLTFPSILTHFRSY-------------VNTNHKEKTI 163
           +QG +   L L RE+R+  +     T+PS+L  F +              V T      +
Sbjct: 301 RQGFIREALSLFRELRSREMRIDDYTYPSVLNSFAALKEAKNAVAVHCLIVKTGFDVYQL 360

Query: 164 SKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQND 343
                +  + + GN+E A++     P  +VIS+ ++++ Y + G   +A+KL C+M+  +
Sbjct: 361 VGNALVDMYAKLGNIESAVEMFRHMPDKDVISWTSLVAGYVQNGSHEKALKLFCEMRDAE 420

Query: 344 IHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADAR 514
           I+PD+F  + IL AC     L   ++IHA  I  GL     V++  +TMY K  C+ +A 
Sbjct: 421 IYPDQFVIASILSACAELTLLEFGQQIHANYIKSGLQASLSVDNSFVTMYAKCGCLEEAH 480

Query: 515 RIFD 526
           R+FD
Sbjct: 481 RVFD 484


>ref|XP_004288861.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Fragaria vesca subsp. vesca]
          Length = 810

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
 Frame = +2

Query: 26  QQGPVLRFLQLRREMRAIRLS-STLTFPSILTHFRSY-------------VNTNHKEKTI 163
           +QG +   L L REMR+  L     T+PS+L  F +              V T  +   +
Sbjct: 314 RQGFIREALSLFREMRSRELKIDDYTYPSVLNSFAALKEVKNAVAIHCLIVKTGFEVYQL 373

Query: 164 SKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQND 343
                +  + + GN+E A++     P  +VIS+ ++++ Y + G   +A+KL C+M+   
Sbjct: 374 VGNALVDMYAKLGNIEFAVEMFRYMPDKDVISWTSLVTGYAQNGSHEKALKLFCEMRDAG 433

Query: 344 IHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADAR 514
           I+PD F  + IL AC     L   ++IHA  I  GL     V++  +T+Y K  C+ +A 
Sbjct: 434 IYPDHFIIASILSACAELTLLEFGQQIHANFIKSGLQASLSVDNSFLTLYAKCGCLEEAL 493

Query: 515 RIFD 526
           R+FD
Sbjct: 494 RVFD 497


>gb|EOX98930.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
           cacao]
          Length = 642

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 48/138 (34%), Positives = 80/138 (57%)
 Frame = +2

Query: 113 LTHFRSYVNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKA 292
           L H   + N  H+ KT    + IS +++   LE+A    +Q P+ NV+++ T+ISAY  A
Sbjct: 94  LVHKHVFSN-GHQPKTFLVNILISMYVKFNLLEQARALFDQMPERNVVTWTTMISAYANA 152

Query: 293 GKTLEAMKLLCKMQQNDIHPDEFTFSIILPACNSPRTLKKIHALIILRGLLFDSYVESRL 472
             +++A++ L  M +  + P+ +TFS +L AC+    L+++H  II  GL  D +V S L
Sbjct: 153 KLSVKALEFLVLMLREGVLPNTYTFSSVLRACDGLVNLRQLHCGIIKVGLESDVFVRSAL 212

Query: 473 ITMYVKHDCMADARRIFD 526
           I +Y K D + DA  +F+
Sbjct: 213 IDVYSKLDKLKDAVCVFN 230


>gb|EMJ23067.1| hypothetical protein PRUPE_ppa018370mg, partial [Prunus persica]
          Length = 412

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 43/127 (33%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
 Frame = +2

Query: 158 TISKEMTISYHIRNGNLEEAMKTL-EQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQ 334
           TI+    I+ +++NG+LEE +K + E+ P  +V+ ++ +I +Y++ G   +A+KL  +M+
Sbjct: 121 TITWNSLINCYVQNGHLEEGLKLIFERVPVKDVVVWSLIIGSYSQCGNNAKALKLFSQMR 180

Query: 335 QNDIHPDEFTFSIILPACNSPRTLKK---IHALIILRGLLFDSYVESRLITMYVKHDCMA 505
              I P+  T   I+ AC S  +L     +H+ ++  GL FD ++ + LI MY K  C+ 
Sbjct: 181 VEGIEPNSVTLLAIISACTSLSSLNLGCGVHSYVLKSGLSFDIFIGNALINMYAKCGCIK 240

Query: 506 DARRIFD 526
           DAR+IF+
Sbjct: 241 DARQIFE 247


>ref|XP_001754449.1| predicted protein [Physcomitrella patens]
           gi|162694551|gb|EDQ80899.1| predicted protein
           [Physcomitrella patens]
          Length = 723

 Score = 84.3 bits (207), Expect = 1e-14
 Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 17/184 (9%)
 Frame = +2

Query: 26  QQGPVLRFLQLRREMRAIRLS-STLTFPSILTHFRSYVNTNHKEKT--------ISKEM- 175
           QQG V   L+L   M+   ++ + +TF SIL    +     H +K           +E+ 
Sbjct: 226 QQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELW 285

Query: 176 ----TISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQND 343
                I+ + + G LEEA K     P  +V+++  +++ Y + G   EA+ L  +MQQ  
Sbjct: 286 VVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQG 345

Query: 344 IHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADAR 514
           I PD+ TF+ +L +C+SP  L   K+IH  ++  G   D Y++S L++MY K   M DA 
Sbjct: 346 IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405

Query: 515 RIFD 526
            +F+
Sbjct: 406 LVFN 409



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           +  + + G++ +A    ++ P+ NV+++  +I+ Y + G+   A++LL  MQQ ++ P++
Sbjct: 190 VGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNK 249

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIF 523
            TF+ IL  C +P  L   KK+H  II  G   + +V + LITMY K   + +AR++F
Sbjct: 250 ITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLF 307



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           +S + + G+L +A +  +     N++S+  +I A+    K LEA K    M+     PD+
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
            TF  +L A  +P  L   +K+H  I+  GL  +  V + L+ MY K   ++ AR IFD
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207


>ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
           gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis
           thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 3/133 (2%)
 Frame = +2

Query: 134 VNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAM 313
           +N+N K  TI     +S + + G+L +A +  +  P+ N++SY +VI+ Y++ G+  EA+
Sbjct: 94  LNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAI 153

Query: 314 KLLCKMQQNDIHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMY 484
           +L  KM Q D+ PD+F F  I+ AC S   +   K++HA +I          ++ LI MY
Sbjct: 154 RLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMY 213

Query: 485 VKHDCMADARRIF 523
           V+ + M+DA R+F
Sbjct: 214 VRFNQMSDASRVF 226



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
 Frame = +2

Query: 161 ISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQN 340
           I++   I+ ++R   + +A +     P  ++IS++++I+ +++ G   EA+  L +M   
Sbjct: 204 IAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSF 263

Query: 341 DI-HPDEFTFSIILPACNS---PRTLKKIHALIILRGLLFDSYVESRLITMYVKHDCMAD 508
            + HP+E+ F   L AC+S   P    +IH L I   L  ++     L  MY +   +  
Sbjct: 264 GVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNS 323

Query: 509 ARRIFD 526
           ARR+FD
Sbjct: 324 ARRVFD 329


>gb|EMJ02387.1| hypothetical protein PRUPE_ppa002996mg [Prunus persica]
          Length = 613

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 48/138 (34%), Positives = 80/138 (57%)
 Frame = +2

Query: 113 LTHFRSYVNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKA 292
           L H   + N  ++ KT    + I+ +++ G LEEA    ++ P+ NV+S+ T+ISAY+ A
Sbjct: 65  LVHKHVFSN-GYRPKTFLTNIFINMYVKFGLLEEAQSLFDEMPERNVVSWTTMISAYSNA 123

Query: 293 GKTLEAMKLLCKMQQNDIHPDEFTFSIILPACNSPRTLKKIHALIILRGLLFDSYVESRL 472
               +A++ L  M + D+ P+ FT+S +L AC+    LK++H  II  GL  D +V S L
Sbjct: 124 KLNHKALESLVLMLREDVMPNSFTYSSVLRACDGLWYLKQLHCSIIRVGLESDVFVRSAL 183

Query: 473 ITMYVKHDCMADARRIFD 526
           I +Y K   + +A  +F+
Sbjct: 184 IDVYSKLGELHNALGVFN 201


>ref|XP_001775099.1| predicted protein [Physcomitrella patens]
           gi|162673550|gb|EDQ60071.1| predicted protein
           [Physcomitrella patens]
          Length = 804

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
 Frame = +2

Query: 200 GNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDEFTFSIIL 379
           G++ EA +  ++    +V+S+N +IS Y   G   EA  L   MQQ  + PD+FTF  IL
Sbjct: 77  GSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSIL 136

Query: 380 PACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
            AC+SP  L   ++IH  ++  GL  D+ V + LI+MY K   + DARR+FD
Sbjct: 137 SACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFD 188



 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 34/119 (28%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           I+ + + G++++A +  ++ P+ +V+S+ T++  Y    + +E+     +M Q  +  ++
Sbjct: 373 INMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANK 432

Query: 359 FTFSIILPACNSPRTLK---KIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
            T+  +L AC++P  LK   +IHA ++  GLL D  V + L++MY K   + DA R+F+
Sbjct: 433 ITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFE 491



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
 Frame = +2

Query: 146 HKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLC 325
           H +  +S  +T  Y ++ G  ++A +  E     +VI++NT+I  +  +G+  EA     
Sbjct: 262 HSDVRVSTALTKMY-MKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFH 320

Query: 326 KMQQNDIHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHD 496
           +M +  + PD  T++ +L AC  P  L   K+IHA     GL+ D    + LI MY K  
Sbjct: 321 RMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAG 380

Query: 497 CMADARRIFD 526
            M DAR++FD
Sbjct: 381 SMKDARQVFD 390



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)
 Frame = +2

Query: 77  IRLSSTLTFPSILTHFRSYVNTNHKEKTISKEMT-----ISYHIRNGNLEEAMKTLEQTP 241
           + + S  + P++L   R  ++    E  ++ + T     IS + + G++ +A +  +   
Sbjct: 133 VSILSACSSPAVLNWGRE-IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMA 191

Query: 242 QCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDEFTFSIILPACNSPRTLKK--- 412
             + +S+ T+  AY ++G   E++K    M Q  + P   T+  +L AC S   L+K   
Sbjct: 192 SRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQ 251

Query: 413 IHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
           IHA I+      D  V + L  MY+K     DAR +F+
Sbjct: 252 IHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFE 289


>gb|EOX96064.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
          Length = 809

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 17/184 (9%)
 Frame = +2

Query: 26  QQGPVLRFLQLRREMRAIRLS-STLTFPSILTHFRSYVNTNHKEKT-------------I 163
           +QG     L L R+M A  +   + T+PS+L  F S +++ H                 +
Sbjct: 313 RQGFEEEALSLFRKMHARDMKMDSFTYPSVLNCFASMMDSKHAMSVHCLIVKAGFEACKL 372

Query: 164 SKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQND 343
                +  + + GNL+ A +     P  +VIS+ ++++ Y   G+  EA+KL C M+   
Sbjct: 373 VNNALVDMYAKQGNLDCAFQVFNHMPNKDVISWTSLVTGYAHNGRHEEALKLFCDMRTAG 432

Query: 344 IHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADAR 514
           I+PD    + IL AC     L   +++HA  +  GL     V++ L+TMY K  C+  A 
Sbjct: 433 IYPDHIILASILSACAELTVLEFGQQVHANFVKSGLQSSLSVDNSLVTMYAKCGCIEYAS 492

Query: 515 RIFD 526
           R+FD
Sbjct: 493 RVFD 496



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           I+ +  +G L EA++  ++ P  + I++N++IS Y + G  +EA  L   MQ     P++
Sbjct: 74  IAAYANSGKLTEAIELFKEIPMKSSITWNSLISGYCRGGMEIEAFDLFWGMQFEGQRPNQ 133

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIF 523
           +T   IL  C++   L   K++H  +I      + YV + L+ MY K +C+ +A  +F
Sbjct: 134 YTMGSILRLCSTLGLLQRGKQVHGYVIKTQFESNDYVVTGLVDMYAKCNCILEAECLF 191



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 21/188 (11%)
 Frame = +2

Query: 26  QQGPVLRFLQLRREMRAIRLSST-LTFPSILTH-----------------FRSYVNTNHK 151
           Q G   + ++  R+M    + S   TFPS+L                   FRS   TN  
Sbjct: 212 QNGEAFKAIECFRDMLVEGVESNQFTFPSVLIACAAVKAGNVGAQVHGCIFRSGFETN-- 269

Query: 152 EKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKM 331
                +   +  + +  +L+ AM+ LE     +V+S+N++I    + G   EA+ L  KM
Sbjct: 270 --VYVQSALVDMYAKCRDLDNAMRVLENMEVDDVVSWNSMIVGCVRQGFEEEALSLFRKM 327

Query: 332 QQNDIHPDEFTFSIILPACNSPRTLK---KIHALIILRGLLFDSYVESRLITMYVKHDCM 502
              D+  D FT+  +L    S    K    +H LI+  G      V + L+ MY K   +
Sbjct: 328 HARDMKMDSFTYPSVLNCFASMMDSKHAMSVHCLIVKAGFEACKLVNNALVDMYAKQGNL 387

Query: 503 ADARRIFD 526
             A ++F+
Sbjct: 388 DCAFQVFN 395


>gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           +  ++  G++ EA +  ++    +V+S+N +IS Y   G   EA  L   MQQ  + PD+
Sbjct: 86  LKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDK 145

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
           FTF  IL AC+SP  L   +++H  ++  GL  ++ V + LI+MY K   + DARR+FD
Sbjct: 146 FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD 204



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
 Frame = +2

Query: 119 HFRSYVNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGK 298
           H +   + +H +  +S  +T  Y I+ G +++A +  E  P  +VI++NT+I     +G+
Sbjct: 269 HAQIVESEHHSDVRVSTALTKMY-IKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327

Query: 299 TLEAMKLLCKMQQNDIHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESR 469
             EA  +  +M +  + PD  T+  IL AC  P  L   K+IHA  +  GL+ D    + 
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNA 387

Query: 470 LITMYVKHDCMADARRIFD 526
           LI MY K   M DAR++FD
Sbjct: 388 LINMYSKAGSMKDARQVFD 406



 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           I+ + + G++++A +  ++ P+ +V+S+  ++  Y   G+ +E+     KM Q  +  ++
Sbjct: 389 INMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANK 448

Query: 359 FTFSIILPACNSPRTLK---KIHALIILRGLLFDSYVESRLITMYVKHDCMADARRI 520
            T+  +L AC++P  LK   +IHA ++  G+  D  V + L++MY K   + DA R+
Sbjct: 449 ITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV 505



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           IS + + G++ +A +  +     + +S+ T+  AY ++G   E++K    M Q  + P  
Sbjct: 187 ISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSR 246

Query: 359 FTFSIILPACNSPRTLKK---IHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
            T+  +L AC S   L+K   IHA I+      D  V + L  MY+K   + DAR +F+
Sbjct: 247 ITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFE 305


>ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group]
           gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa
           Japonica Group]
          Length = 1632

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGK------TLEAMKLLCKMQQN 340
           +  + +NG LEEA+K  +  P  NV+ YN +I+ + + G        +EA+ L   M + 
Sbjct: 220 VDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKK 279

Query: 341 DIHPDEFTFSIILPAC---NSPRTLKKIHALIILRGLLFDSYVESRLITMYVKHDCMADA 511
            I P +FTF  +L  C   N+ R  ++IHA +IL GL  D ++ S LI +Y K  C+ D+
Sbjct: 280 RIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASVLINLYSKARCVNDS 339

Query: 512 RRIFD 526
            R FD
Sbjct: 340 LRCFD 344


>gb|EEE60271.1| hypothetical protein OsJ_13308 [Oryza sativa Japonica Group]
          Length = 758

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGK------TLEAMKLLCKMQQN 340
           +  + +NG LEEA+K  +  P  NV+ YN +I+ + + G        +EA+ L   M + 
Sbjct: 220 VDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKK 279

Query: 341 DIHPDEFTFSIILPAC---NSPRTLKKIHALIILRGLLFDSYVESRLITMYVKHDCMADA 511
            I P +FTF  +L  C   N+ R  ++IHA +IL GL  D ++ S LI +Y K  C+ D+
Sbjct: 280 RIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASVLINLYSKARCVNDS 339

Query: 512 RRIFD 526
            R FD
Sbjct: 340 LRCFD 344


>gb|AAT77022.1| putative PPR repeat protein [Oryza sativa Japonica Group]
           gi|108712010|gb|ABF99805.1| pentatricopeptide, putative
           [Oryza sativa Japonica Group]
          Length = 725

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGK------TLEAMKLLCKMQQN 340
           +  + +NG LEEA+K  +  P  NV+ YN +I+ + + G        +EA+ L   M + 
Sbjct: 220 VDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKK 279

Query: 341 DIHPDEFTFSIILPAC---NSPRTLKKIHALIILRGLLFDSYVESRLITMYVKHDCMADA 511
            I P +FTF  +L  C   N+ R  ++IHA +IL GL  D ++ S LI +Y K  C+ D+
Sbjct: 280 RIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASVLINLYSKARCVNDS 339

Query: 512 RRIFD 526
            R FD
Sbjct: 340 LRCFD 344


>ref|XP_006580029.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 637

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 46/133 (34%), Positives = 76/133 (57%)
 Frame = +2

Query: 125 RSYVNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTL 304
           R   +  +  KT    + I+ +++   LEEA    ++ P+ NV+S+ T+ISAY+ A    
Sbjct: 92  RHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLND 151

Query: 305 EAMKLLCKMQQNDIHPDEFTFSIILPACNSPRTLKKIHALIILRGLLFDSYVESRLITMY 484
            AM+LL  M ++ + P+ FTFS +L AC     LK++H+ I+  GL  D +V S LI +Y
Sbjct: 152 RAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVY 211

Query: 485 VKHDCMADARRIF 523
            K   + +A ++F
Sbjct: 212 SKMGELLEALKVF 224


>ref|XP_006849978.1| hypothetical protein AMTR_s00022p00156450 [Amborella trichopoda]
           gi|548853576|gb|ERN11559.1| hypothetical protein
           AMTR_s00022p00156450 [Amborella trichopoda]
          Length = 203

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 44/105 (41%), Positives = 64/105 (60%)
 Frame = +2

Query: 212 EAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDEFTFSIILPACN 391
           EA K  ++    N++S+ T+ISAYT  G   EA++LL  M +  I P+ +TFS IL AC 
Sbjct: 55  EAGKVFDKMLHRNIVSWTTMISAYTNTGSNEEALRLLVLMLREGIMPNMYTFSAILRACG 114

Query: 392 SPRTLKKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
             RTL+++HALI+  GL  D +V S LI MY K+  +     +F+
Sbjct: 115 RIRTLEQVHALILECGLESDVFVRSALIDMYAKNGDLESGLCVFN 159


>gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 17/184 (9%)
 Frame = +2

Query: 26  QQGPVLRFLQLRREMRAIRLS-STLTFPSILTHFRSYVNTNHKEKT--------ISKEM- 175
           QQG V   L+L  +M+   ++ + +T+ SIL    + +   H +K           +E+ 
Sbjct: 275 QQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIW 334

Query: 176 ----TISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQND 343
                I+ + + G L+EA K     P  +V+++  +++ Y + G   EA+ L  +MQQ  
Sbjct: 335 VVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQG 394

Query: 344 IHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADAR 514
           I PD+ TF+  L +C+SP  L   K IH  ++  G   D Y++S L++MY K   M DAR
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDAR 454

Query: 515 RIFD 526
            +F+
Sbjct: 455 LVFN 458



 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           +  + + G++ +A    ++ P+ NV+++  +I+ Y + G+   A++LL KMQQ ++ P++
Sbjct: 239 VGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNK 298

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIF 523
            T++ IL  C +P  L   KK+H  II  G   + +V + LITMY K   + +AR++F
Sbjct: 299 ITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLF 356



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           +S + + G+L +A +  +     N++S+  +I A+    + LEA K    M+     PD+
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
            TF  +L A  +P  L   +K+H  I   GL  +  V + L+ MY K   ++ A+ IFD
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD 256


>ref|XP_006384866.1| hypothetical protein POPTR_0004s21780g [Populus trichocarpa]
           gi|550341634|gb|ERP62663.1| hypothetical protein
           POPTR_0004s21780g [Populus trichocarpa]
          Length = 571

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 43/131 (32%), Positives = 75/131 (57%)
 Frame = +2

Query: 134 VNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAM 313
           ++  H  KT    + I+ +++ G L +A    ++ P  NV+S+ T+ISAY+ A    +A+
Sbjct: 29  ISNGHVPKTFLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKAL 88

Query: 314 KLLCKMQQNDIHPDEFTFSIILPACNSPRTLKKIHALIILRGLLFDSYVESRLITMYVKH 493
           + L  M +  + P+ FT+S +L AC+    L+++H  II  GL  D +V S LI +Y + 
Sbjct: 89  EFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRW 148

Query: 494 DCMADARRIFD 526
             + +A R+FD
Sbjct: 149 GELENALRVFD 159


>dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
           gi|51090953|dbj|BAD35556.1| selenium-binding
           protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 37/119 (31%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           ++ ++R G L++A   L++ P+ +V+S+ T+IS Y++  + +EA+ L  KM +    P+E
Sbjct: 84  VTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 143

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
           +T + +L +C+ P+++   K++H+L++        +V S L+ MY K + + +ARR+FD
Sbjct: 144 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFD 202



 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
 Frame = +2

Query: 134 VNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAM 313
           V TN +         +  + ++ N++EA +  +  P+ +V+S   +IS Y + G   EA+
Sbjct: 170 VKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEAL 229

Query: 314 KLLCKMQQNDIHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMY 484
            L  ++    +  +  TF+ ++ A +   +L   K++HALI+ + L F   +++ LI MY
Sbjct: 230 DLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMY 289

Query: 485 VKHDCMADARRIFD 526
            K   +  +RR+FD
Sbjct: 290 SKCGKLLYSRRVFD 303


>ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
           gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa
           Japonica Group]
          Length = 590

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 37/119 (31%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
 Frame = +2

Query: 179 ISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAMKLLCKMQQNDIHPDE 358
           ++ ++R G L++A   L++ P+ +V+S+ T+IS Y++  + +EA+ L  KM +    P+E
Sbjct: 52  VTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 111

Query: 359 FTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMYVKHDCMADARRIFD 526
           +T + +L +C+ P+++   K++H+L++        +V S L+ MY K + + +ARR+FD
Sbjct: 112 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFD 170



 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 36/134 (26%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
 Frame = +2

Query: 134 VNTNHKEKTISKEMTISYHIRNGNLEEAMKTLEQTPQCNVISYNTVISAYTKAGKTLEAM 313
           V TN +         +  + ++ N++EA +  +  P+ +V+S   +IS Y + G   EA+
Sbjct: 138 VKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEAL 197

Query: 314 KLLCKMQQNDIHPDEFTFSIILPACNSPRTL---KKIHALIILRGLLFDSYVESRLITMY 484
            L  ++    +  +  TF+ ++ A +   +L   K++HALI+ + L F   +++ LI MY
Sbjct: 198 DLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMY 257

Query: 485 VKHDCMADARRIFD 526
            K   +  +RR+FD
Sbjct: 258 SKCGKLLYSRRVFD 271