BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00027326
         (625 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQ01581.1| agCP7521-like protein [Aedes albopictus]               131   2e-28
gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium ...   129   7e-28
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi...   116   6e-24
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     114   2e-23
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   113   4e-23
ref|XP_003240529.1| PREDICTED: copia protein-like [Acyrthosiphon...   111   2e-22
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]   110   3e-22
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]   109   5e-22
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...   108   2e-21
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   106   5e-21
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   106   6e-21
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   105   8e-21
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   105   1e-20
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       105   1e-20
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...   104   2e-20
gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   104   2e-20
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...   104   2e-20
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]         103   3e-20
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]        103   3e-20
gb|ACI62137.1| polyprotein [Drosophila melanogaster]                  103   4e-20

>gb|AAQ01581.1| agCP7521-like protein [Aedes albopictus]
          Length = 602

 Score =  131 bits (329), Expect = 2e-28
 Identities = 73/189 (38%), Positives = 111/189 (58%), Gaps = 3/189 (1%)
 Frame = -3

Query: 560 LQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEKLIATSIGSPRLY 381
           LQ+K+VL V  LR NL+SV+KL  AG+ V      +N +   L  N   IAT+     LY
Sbjct: 323 LQVKDVLYVPSLRDNLMSVKKLAKAGIEVV-----FNSKLATLKLNGNPIATAYLRGNLY 377

Query: 380 QLKLEIVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKKVNGKNV---PNTQEICESCA 210
           +LK+E+ ++S     S+    WH +LGH+    +  + ++   K +   P   + C++C 
Sbjct: 378 ELKIEVPEKSANLCSSDVTNLWHRRLGHLCENGMKTMVREDLAKGLNFKPEKLKFCDACV 437

Query: 209 KGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKS 30
           +GKM R PF  +  + +R L  IHSD+C P+   S+ G +YFVSFIDD S ++ V+LLK 
Sbjct: 438 QGKMCREPFDGTRERATRPLGRIHSDVCGPIEPASWDGCRYFVSFIDDYSHFAMVFLLKK 497

Query: 29  RDEVFEKFK 3
           + +VFEKF+
Sbjct: 498 KSQVFEKFQ 506


>gb|EFA05312.1| hypothetical protein TcasGA2_TC015470 [Tribolium castaneum]
          Length = 2375

 Score =  129 bits (324), Expect = 7e-28
 Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 12/196 (6%)
 Frame = -3

Query: 554 IKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEKLIATSIGSPRLYQL 375
           IKNVL V  L+ NL+SV+K+ +A + V      + + ++ +  N K++A       LY++
Sbjct: 329 IKNVLYVKNLKHNLLSVQKIELASLNVS-----FEHGKVVIKRNSKVLAEGKRIDNLYEI 383

Query: 374 KLEIVDE-----SNLANQSNPWKEWHNKLGHVNGRYLNKIYKK--VNGKNVPNTQ----E 228
             E+ ++     SN+   S   K WH +LGH++ + L  + K   V+G N+ N+     +
Sbjct: 384 CFEVENKCKVVCSNVCEVSASLKLWHRRLGHLSNKNLVTLSKNNMVSGLNIRNSNCNESQ 443

Query: 227 ICESCAKGKMSRSPFIP-SNTKTSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYS 51
           ICE C K K+++ PF   S+ KT+R+LELIHSD+C P+   ++ G +YF++F+DD + + 
Sbjct: 444 ICEVCVKSKITKLPFGKRSDNKTTRVLELIHSDLCGPITPETHDGKRYFLTFLDDYTHFC 503

Query: 50  FVYLLKSRDEVFEKFK 3
            VYLLKS+ EVFE FK
Sbjct: 504 VVYLLKSKSEVFEYFK 519


>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1347

 Score =  116 bits (290), Expect = 6e-24
 Identities = 71/209 (33%), Positives = 109/209 (52%), Gaps = 4/209 (1%)
 Frame = -3

Query: 617 DILTIRGFGNIEIILPNFKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQL 438
           DI+   G G+I ++  + K  IKNV LV  L  NL+SV +++ +G  V     R   +  
Sbjct: 360 DIVMTAGKGDITVMTRHGKRIIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDA 419

Query: 437 RLFYNEKLIATSIGSPRLYQLKLEIVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKKV 258
               N K I     + + +++KL  V+E  +       + WH +LGHV+ + L ++  K 
Sbjct: 420 ----NGKEIMNIEMTDKSFKIKLSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKE 475

Query: 257 NGKNVPN---TQEICESCAKGKMSRSPFIP-SNTKTSRILELIHSDICDPMPTHSYRGYK 90
               +P    T+E C++C  GK SR  F   S TKT   LE++H+D+C PM   S  G +
Sbjct: 476 LVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSR 535

Query: 89  YFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
           Y+V F+DD +   +VY LK + E F  FK
Sbjct: 536 YYVLFLDDYTHMCWVYFLKQKSETFATFK 564


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  114 bits (285), Expect = 2e-23
 Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 8/205 (3%)
 Frame = -3

Query: 593 GNIEIILPN-FKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEK 417
           G + + LP+   L++ N   V  L  N+IS   L   G          +     +FY   
Sbjct: 346 GTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHA 405

Query: 416 LIATSIGSPRLYQLKLE------IVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKKVN 255
            +        LY L LE      I  E  L+N  NP   WH +LGH+N + + K++K   
Sbjct: 406 PLVNG-----LYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGL 460

Query: 254 GKNVP-NTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVS 78
             +    + E CESC  GKM+++PF   + + S +L L+H+D+C PM + +  GY+YF++
Sbjct: 461 LHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFIT 520

Query: 77  FIDDLSRYSFVYLLKSRDEVFEKFK 3
           F DD SRY ++YL++ + E FEKFK
Sbjct: 521 FTDDFSRYGYIYLMRHKSESFEKFK 545


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  113 bits (283), Expect = 4e-23
 Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 2/188 (1%)
 Frame = -3

Query: 560 LQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEKLIATSIGSPRLY 381
           L++KN   V  +  N+ISV  L M G          ++++  +FY    +   +      
Sbjct: 3   LELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQS 62

Query: 380 QLKLEIVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKK--VNGKNVPNTQEICESCAK 207
                I  +   +N  NP   WH +LGH+N +++ K++    +N  +   + E CESC  
Sbjct: 63  MPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDY-ESYETCESCLL 121

Query: 206 GKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSR 27
           GKM+++PF   + + S +L LIH+D+C PM T +   Y+YF++F DD SRY +VYL+K +
Sbjct: 122 GKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHK 181

Query: 26  DEVFEKFK 3
            + FE FK
Sbjct: 182 SKSFENFK 189


>ref|XP_003240529.1| PREDICTED: copia protein-like [Acyrthosiphon pisum]
          Length = 1279

 Score =  111 bits (277), Expect = 2e-22
 Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 7/192 (3%)
 Frame = -3

Query: 557 QIKNVLLVHRLRSNLISVRKLVMAGVAV---EGNITRYNYEQLRLFYNEKLIATSIGSPR 387
           +I+ VL V  LR NL+SV +L  AG+ V    G +  YN    +L     LI        
Sbjct: 336 KIEKVLYVPELRHNLLSVGRLENAGLKVIFNNGFVMVYN----KLNNKNNLIMKGSKVGN 391

Query: 386 LYQLKLEIVDESNLANQS--NPWKEWHNKLGHVNGRYLNKIYKKVNGKNVPNTQ--EICE 219
           LY+L   +      AN S  N    WH +LGH+N + L K+   V+G  + N +  EIC 
Sbjct: 392 LYELTFNLNQNMPFANYSYSNTIDLWHRRLGHLNFQTLEKLPDIVDGICINNEKYNEICG 451

Query: 218 SCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYL 39
            C   K +  PF  +  + +R LELIHSD+C P+   ++   +Y+VSFIDD + ++ +YL
Sbjct: 452 VCISSKQAALPFSGTRVRATRPLELIHSDVCGPIEPQTWDNKRYYVSFIDDNTHFTVIYL 511

Query: 38  LKSRDEVFEKFK 3
           L  ++EVF  FK
Sbjct: 512 LSKKNEVFSAFK 523


>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score =  110 bits (275), Expect = 3e-22
 Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
 Frame = -3

Query: 611 LTIRGFGNIEIILPNFK-LQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLR 435
           + +   GNI +   N + L +KNVL V  +R NLISV  L   G +V  N   +  + + 
Sbjct: 299 VAVLAVGNIALNFKNNRILSLKNVLYVPSIRRNLISVSSLSKNGYSVCFN--EFYDDSVV 356

Query: 434 LFYNEKLIATSIGSPRLYQLKLEIVDESNLANQS-------NPWKE-----------WHN 309
           + + E++I +      LY LK  +  E  L N          P K            WH 
Sbjct: 357 IKFREQIICSGSLIDGLYILK--VTPELQLTNSEVNNFDIVAPLKRKCPIELSYTYLWHL 414

Query: 308 KLGHVNGRYLNKIYKKVNGKNVP-NTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSD 132
           +LGH+N   ++ + K     ++       CESC +GKM+  PF     + + +LELIHSD
Sbjct: 415 RLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELIHSD 474

Query: 131 ICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
           +C PM   +  G++YFV+F  D SRY ++YLL+ + E FEKFK
Sbjct: 475 LCGPMSVQARGGFEYFVTFTYDYSRYGYIYLLRRKSECFEKFK 517


>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score =  109 bits (273), Expect = 5e-22
 Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
 Frame = -3

Query: 611  LTIRGFGNIEIILPNFK-LQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLR 435
            + +   GNI +   N + L +KNVL V  +R NLI +  L   G +V  N   +  + + 
Sbjct: 651  VAVLAVGNIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVCFN--EFYDDSVV 708

Query: 434  LFYNEKLIATSIGSPRLYQLKLEIVDESNLANQS-------NPWKE-----------WHN 309
            + + E++I +      LY LK  +  E  L N          P K            WH 
Sbjct: 709  IKFREQMICSGSLIDSLYILK--VTPELQLTNSEVNNFDIVAPLKRKRPIELSYTYLWHL 766

Query: 308  KLGHVNGRYLNKIYKKVNGKNVP-NTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSD 132
            +LGH+N   ++ + K     ++       CESC +GKM++ PF     + + +LELIHSD
Sbjct: 767  RLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSD 826

Query: 131  ICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
            +C PM   +  G++YFV+F DD SRY ++YLL  + E FEKFK
Sbjct: 827  LCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFK 869


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score =  108 bits (269), Expect = 2e-21
 Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 4/208 (1%)
 Frame = -3

Query: 614 ILTIRGFGNIEIILPNFKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLR 435
           ++   G G+IE++    K  I++VLLV +L  NL+SV ++++ G  V     + NY  + 
Sbjct: 65  VMMSEGKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVT---LKNNYCTIH 121

Query: 434 LFYNEKLIATSIGSPRLYQLKLEIVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKKVN 255
               +K+    + + + + L+    +E+ +  +    + WH +LGH     L  +  K  
Sbjct: 122 DSARKKIGEVEMVN-KSFHLRWLSNEETAMVAKDEATELWHKRLGHTGHSNLKILQSKEM 180

Query: 254 GKNVP--NTQE-ICESCAKGKMSRSPFIP-SNTKTSRILELIHSDICDPMPTHSYRGYKY 87
              +P  N +E  CESC   K SR PF   S T+    LELIHSD+C PM   S  G +Y
Sbjct: 181 VTGLPKFNVEEGKCESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRY 240

Query: 86  FVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
            ++FIDD +R  +VY LK++ EVF+ FK
Sbjct: 241 ILTFIDDATRMVWVYFLKAKSEVFQTFK 268


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score =  106 bits (265), Expect = 5e-21
 Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 5/202 (2%)
 Frame = -3

Query: 593 GNIEIILPN-FKLQIKNVLLVHRLRSNLISVRKLVMAGV---AVEGNITRYNYEQLRLFY 426
           G + + LP+   L++ N   +  L  N+IS   L   G    +V+ + + Y Y  +  F+
Sbjct: 322 GTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRSVDNDCSVY-YNDIFYFH 380

Query: 425 NEKLIATSIGSPRLYQLKLEIVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKKVNGKN 246
              +    I +   Y +   I  +    N  NP   WH +LGH+N + + KI++     +
Sbjct: 381 APMMSGLYIVNLNGYSV-YNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHS 439

Query: 245 VP-NTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVSFID 69
               + E CESC  GKM+++PF   + + S +L L+H+D+C PM + +  G+ YF +F D
Sbjct: 440 FDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTD 499

Query: 68  DLSRYSFVYLLKSRDEVFEKFK 3
           D SRY +VYL++ + E FEKFK
Sbjct: 500 DFSRYGYVYLMRHKSESFEKFK 521


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
           Group]
          Length = 1399

 Score =  106 bits (264), Expect = 6e-21
 Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 2/205 (0%)
 Frame = -3

Query: 611 LTIRGFGNIEIILPNFKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRL 432
           + I+  G+  I  P  +L +KN+L V + + NLIS  +L M   A        NY  ++ 
Sbjct: 325 MEIKHIGDSVIHTPTRELHLKNILHVPQAKKNLISAHRLAMDNFAFLE--VHSNYFLIKD 382

Query: 431 FYNEKLIATSIGSPRLYQLKLEIVDESNLANQSNPWKEWHNKLGHVNGRYLNKIYKKVN- 255
                 I       RLY L      + + A   + +  WH++LGH     + ++  K N 
Sbjct: 383 RATRNTILKGRCRRRLYSLPTSPAKQVHAATTPS-FSRWHSRLGHPAVPIVTRVLSKNNL 441

Query: 254 -GKNVPNTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVS 78
               V N   IC++C KGK  + P+  S++ +S+ LELI S++  P P  S  G K++VS
Sbjct: 442 PCSTVANKDSICDACQKGKSHQLPYPKSSSVSSQPLELIFSNVWGPAPI-SVGGKKFYVS 500

Query: 77  FIDDLSRYSFVYLLKSRDEVFEKFK 3
           FIDD S++++VYLLK + EVF+KF+
Sbjct: 501 FIDDYSKFTWVYLLKHKSEVFQKFQ 525


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  105 bits (263), Expect = 8e-21
 Identities = 64/204 (31%), Positives = 108/204 (52%), Gaps = 9/204 (4%)
 Frame = -3

Query: 587  IEIILPN-FKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEKLI 411
            + ++LP+ F +++ N   V  +  N+IS   L+      EG           +F N+   
Sbjct: 436  LPLVLPSGFIMELNNCYYVPAMSRNIISASCLM-----TEGYKFIIEDHGCSIFLNDMFY 490

Query: 410  ATSIGSPRLYQLKLEIVDESNL------ANQSNPWKEWHNKLGHVNGRYLNKIYKK--VN 255
              +     L+ L L+     N+       N  N    WH +LGH++ + + K++    +N
Sbjct: 491  GYAPVLNGLFILNLDDAPIFNINAKRLRPNNMNSTFIWHCRLGHISEKRMKKLHDDGILN 550

Query: 254  GKNVPNTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVSF 75
              ++ +  E CESC  GKM+++PF   N + S +L LIH+D+C PM T +  G++YF++F
Sbjct: 551  SFDLESF-ETCESCILGKMTKTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITF 609

Query: 74   IDDLSRYSFVYLLKSRDEVFEKFK 3
             DD SRY ++YL++ + E FEKFK
Sbjct: 610  TDDYSRYGYIYLMRHKSESFEKFK 633


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  105 bits (262), Expect = 1e-20
 Identities = 47/114 (41%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341  NQSNPWKEWHNKLGHVNGRYLNKIYKKVNGKNVP-NTQEICESCAKGKMSRSPFIPSNTK 165
            N  NP   WH +LGH+N + + K+++     ++   + E CESC  GKM+++PF   + +
Sbjct: 908  NDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSER 967

Query: 164  TSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
            TS +L L+H+D+C PM + +  G+ YF++F DD SRY +VYL++ + E FEKFK
Sbjct: 968  TSELLVLVHTDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFK 1021


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  105 bits (261), Expect = 1e-20
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 16/221 (7%)
 Frame = -3

Query: 617 DILTIRGFGNIEIILPNFKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQL 438
           ++++    G++ +   +  L +K+VL V  ++ NLIS+         +  +I   ++E  
Sbjct: 337 EVVSAEAVGDLTLFFQDRYLILKDVLYVPLMKRNLISI-------ACILEHIYTISFEVN 389

Query: 437 RLFYNEK--LIATSIGSPRLYQLK-------LEIVDESNLANQSNPWKE------WHNKL 303
            +F   K   I ++I    LY+L+       L       L  Q+   K       WH +L
Sbjct: 390 EVFILCKGIQICSAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRL 449

Query: 302 GHVNGRYLNKIYKK-VNGKNVPNTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDIC 126
           GH+N   + ++ K  +  +   N+   CESC +GKM++  F     +    LEL+HSD+C
Sbjct: 450 GHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLC 509

Query: 125 DPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
            PM   +  GY+YF+SFIDD SRY  VYLL  + E FEKFK
Sbjct: 510 GPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFK 550


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score =  104 bits (260), Expect = 2e-20
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 8/205 (3%)
 Frame = -3

Query: 593 GNIEIILPN-FKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEK 417
           G + + LP+   L++ N   +  L  N+IS   L       EG   R       ++YN+ 
Sbjct: 231 GTMPLSLPSGLVLELNNCYCILALCKNVISASCL-----QAEGYGFRSVDNGCSVYYNDI 285

Query: 416 LIATSIGSPRLYQLKLEIVDESNL------ANQSNPWKEWHNKLGHVNGRYLNKIYKKVN 255
               +     LY + L+     N+       N  NP   WH +LGH+N R + K+++   
Sbjct: 286 FYFHAPMMNGLYIVNLDGCSVYNINAKRQRPNDLNPTFIWHCRLGHINERRMEKLHRDGL 345

Query: 254 GKNVP-NTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVS 78
             +    + E CESC  GKM+++PF   + K S +L L+H+D+C PM + +  G+ YF++
Sbjct: 346 LHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGLVHTDVCGPMSSTARGGFGYFIT 405

Query: 77  FIDDLSRYSFVYLLKSRDEVFEKFK 3
           F +D SRY +VYL++ + + FEKFK
Sbjct: 406 FTNDFSRYGYVYLMRHKSDSFEKFK 430


>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  104 bits (260), Expect = 2e-20
 Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 7/191 (3%)
 Frame = -3

Query: 554 IKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEKLIATSIGSPRLYQL 375
           + N+  +  LRSN++S+ +    G  V     + NY  LR      L+       RLY++
Sbjct: 257 LTNIYYIPELRSNILSLGQATEQGCDVR---MKDNYLTLRDPSGRLLVKVLRSPNRLYKV 313

Query: 374 KLEIVDESNLANQSN--PWKEWHNKLGHVNGRYLNKIYKKVNGKNVPNTQE---ICESCA 210
            L++   S L  + N  PW+ WH +LGH+N + +  + K    + +P   E   +CESC 
Sbjct: 314 SLKVGKPSCLLTKINEEPWR-WHARLGHINFKTIKDMAKLEMVRGLPEINEEKKLCESCL 372

Query: 209 KGKMSRSPFIPSNT--KTSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLL 36
            GK +R+ F PS T  ++S++LEL+H+D+C P+   +    +Y    IDD +RY +  LL
Sbjct: 373 VGKQTRNSF-PSATPHRSSQVLELLHADLCGPISPSTLAQNRYIFVIIDDNTRYMWSILL 431

Query: 35  KSRDEVFEKFK 3
           K + EVFEKFK
Sbjct: 432 KEKSEVFEKFK 442


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 829

 Score =  104 bits (259), Expect = 2e-20
 Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
 Frame = -3

Query: 347 LANQSNPWKEWHNKLGHVNGRYLNKIYKKVNGKNVP-NTQEICESCAKGKMSRSPFIPSN 171
           L N  NP   WH +LGH+N + + K+++     +    + E CESC  GKM+++PF   +
Sbjct: 374 LPNDLNPTFIWHCRLGHINEKRMKKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQS 433

Query: 170 TKTSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
            + S +L L+H+D+C PM + +  G+ YF++F DD SRY +VYL++ + E FEKFK
Sbjct: 434 ERASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRYGYVYLMRHKSESFEKFK 489


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score =  103 bits (258), Expect = 3e-20
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 8/205 (3%)
 Frame = -3

Query: 593 GNIEIILPN-FKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNEK 417
           G + + LP+   L++ N   +  L  N+IS   L       EG   R       ++YN+ 
Sbjct: 305 GTMSLSLPSGLVLELNNCYCIPALCKNVISASCL-----QAEGYGFRSVDNGCSVYYNDI 359

Query: 416 LIATSIGSPRLYQLKLEIVDESNL------ANQSNPWKEWHNKLGHVNGRYLNKIYKKVN 255
               +     LY + L+     N+       N  NP   WH + GH+N + + K+ +   
Sbjct: 360 FYFNAPMMNGLYIVNLDGCSVYNINAKRQRPNDLNPTFIWHCRFGHINEKCMEKLNRDGL 419

Query: 254 GKNVP-NTQEICESCAKGKMSRSPFIPSNTKTSRILELIHSDICDPMPTHSYRGYKYFVS 78
             +    + E CESC  GKM+++PF   + + S +L L+H+DIC PM + +  G+ YF++
Sbjct: 420 LHSFGFESFETCESCLLGKMTKAPFTGQSERASELLGLVHTDICGPMSSTAKGGFGYFIT 479

Query: 77  FIDDLSRYSFVYLLKSRDEVFEKFK 3
           F DD SRY +VYL++ + E FEKFK
Sbjct: 480 FTDDFSRYGYVYLMRHKSESFEKFK 504


>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
          Length = 948

 Score =  103 bits (258), Expect = 3e-20
 Identities = 46/114 (40%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
 Frame = -3

Query: 341 NQSNPWKEWHNKLGHVNGRYLNKIYKKVNGKNVP-NTQEICESCAKGKMSRSPFIPSNTK 165
           N  NP   WH +LGH+N + + K+++     +    + E CESC  GKM+++PF   + +
Sbjct: 427 NDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSER 486

Query: 164 TSRILELIHSDICDPMPTHSYRGYKYFVSFIDDLSRYSFVYLLKSRDEVFEKFK 3
            S +L L+H+D+C PM + +  G+ YF++F DD SRY +VYL++ + E FEKFK
Sbjct: 487 ASELLALVHTDVCGPMSSTARSGFGYFITFTDDFSRYGYVYLMRHKSESFEKFK 540


>gb|ACI62137.1| polyprotein [Drosophila melanogaster]
          Length = 1319

 Score =  103 bits (257), Expect = 4e-20
 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 8/207 (3%)
 Frame = -3

Query: 599 GFGNIEIILPNFKLQIKNVLLVHRLRSNLISVRKLVMAGVAVEGNITRYNYEQLRLFYNE 420
           G G + +   N  +++++V+ V  L  N +SV K      A   NIT ++ +   +   +
Sbjct: 312 GIGTVMLKSQNVNIELRDVIYVPSLHMNFLSVSKS-----AEYENITTFDKKAAVIKNKQ 366

Query: 419 -KLIATSIGSPRLYQLKLEIVDES-NLANQSNPWKEWHNKLGHVNGRYLNKIYKK--VNG 252
            +++  ++    LY       + + +L N S+    WHN+ GH+N + L +I +K  V G
Sbjct: 367 GEVMMRAMQEDNLYLFTSSSKNGAVHLLNDSSRMATWHNRFGHLNFQCLKEIKEKELVIG 426

Query: 251 KNVPNTQEI--CESCAKGKMSRSPFIPSNTK--TSRILELIHSDICDPMPTHSYRGYKYF 84
            +  N      C++C   K+   PF P N++  T  +LEL+HSD+C PM   S  G KYF
Sbjct: 427 MDFKNMSVNINCDTCNMAKIHVLPF-PQNSERATQSVLELVHSDVCGPMNVSSLGGNKYF 485

Query: 83  VSFIDDLSRYSFVYLLKSRDEVFEKFK 3
           V+FIDD SR  F+Y + +++EVF+KFK
Sbjct: 486 VTFIDDYSRKIFIYFMHAKNEVFDKFK 512