BLASTX nr result
ID: Ephedra28_contig00027189
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00027189
(510 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC34666.1| hypothetical protein L484_020434 [Morus notabilis] 159 4e-37
gb|EXB60277.1| hypothetical protein L484_005875 [Morus notabilis] 156 3e-36
ref|XP_004509956.1| PREDICTED: pentatricopeptide repeat-containi... 155 5e-36
ref|XP_006857535.1| hypothetical protein AMTR_s00061p00035580 [A... 155 7e-36
ref|XP_006306854.1| hypothetical protein CARUB_v10008399mg [Caps... 155 7e-36
ref|XP_004237759.1| PREDICTED: pentatricopeptide repeat-containi... 154 9e-36
gb|EXB90557.1| hypothetical protein L484_001711 [Morus notabilis] 154 1e-35
ref|XP_002303374.2| hypothetical protein POPTR_0003s07960g [Popu... 153 2e-35
gb|AEP33764.1| organelle transcript processing 82, partial [Iber... 153 2e-35
emb|CBI15551.3| unnamed protein product [Vitis vinifera] 153 2e-35
ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containi... 153 2e-35
ref|XP_002329535.1| predicted protein [Populus trichocarpa] gi|5... 153 3e-35
ref|XP_002302197.1| pentatricopeptide repeat-containing family p... 153 3e-35
ref|XP_003524346.2| PREDICTED: pentatricopeptide repeat-containi... 152 3e-35
gb|EOY16597.1| Pentatricopeptide repeat superfamily protein [The... 152 3e-35
ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi... 152 3e-35
gb|AEP33760.1| organelle transcript processing 82, partial [Caps... 152 3e-35
emb|CBI19956.3| unnamed protein product [Vitis vinifera] 152 3e-35
ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis tha... 152 4e-35
ref|XP_002892433.1| pentatricopeptide repeat-containing protein ... 152 4e-35
>gb|EXC34666.1| hypothetical protein L484_020434 [Morus notabilis]
Length = 603
Score = 159 bits (402), Expect = 4e-37
Identities = 74/169 (43%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD + +D +TSM+ G+A+ G + AR+ FD MP +N SWNAM++GY+QN ++ +
Sbjct: 247 FDCMKTRDVFSWTSMVNGYAKCGELDVAREFFDSMPEKNAVSWNAMIAGYSQNNQPKEAL 306
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGF-VCVSGLVPNMAVDNALLSM 358
KLF DM+ G+ + T V +SACG L LD+G IH + + G P++ ++NAL+ M
Sbjct: 307 KLFHDMMKAGLAPTEHTLVCALSACGQLGCLDLGQWIHHYHINPKGPRPSVILNNALMDM 366
Query: 359 YAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
YAKCG + + +F M + N++SWNT+I GYA HG+ K+AL LF++MK
Sbjct: 367 YAKCGCIDTAAGVFNEMSEGNLVSWNTMIAGYAAHGYAKQALNLFDQMK 415
Score = 105 bits (263), Expect = 5e-21
Identities = 51/160 (31%), Positives = 94/160 (58%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D + +I +A G + AR++FDE R++ +W M+ GYA+ +L ++ +++F M+
Sbjct: 122 DLLVRNGLIRFYAERGCLFYARKMFDECSVRDVVTWTTMIDGYAKQDLSDEAIQVFESML 181
Query: 203 GRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLR 382
++ +++T + ++SACG+ + MG I+ +V + + ++ + NA L M+AKCG L
Sbjct: 182 LSDVQPNEITMITMLSACGSKGDVRMGKRIYDYVIMENVHCSLNLSNAALDMFAKCGCLI 241
Query: 383 KSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
++R IF MK +V SW +++ GYA G A F+ M
Sbjct: 242 EAREIFDCMKTRDVFSWTSMVNGYAKCGELDVAREFFDSM 281
Score = 84.3 bits (207), Expect = 1e-14
Identities = 46/145 (31%), Positives = 76/145 (52%)
Frame = +2
Query: 68 GHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVI 247
G I AR LF ++ + N Y WN M+ GYA+ ++ G F MV + +++D ++ V +
Sbjct: 36 GDIRYARLLFSQIENPNTYMWNTMIRGYAKAQVPLMGFSFFRRMVLQHVEMDGLSFVYAL 95
Query: 248 SACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVI 427
AC L + G + + G ++ V N L+ YA+ G L +R++F +V+
Sbjct: 96 KACEKLPRISEGNSVCCLIWKMGFDADLLVRNGLIRFYAERGCLFYARKMFDECSVRDVV 155
Query: 428 SWNTIITGYAHHGHGKEALGLFEEM 502
+W T+I GYA EA+ +FE M
Sbjct: 156 TWTTMIDGYAKQDLSDEAIQVFESM 180
Score = 59.7 bits (143), Expect = 4e-07
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 2/154 (1%)
Frame = +2
Query: 14 PNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFV 193
P + +++ +A+ G I A +F+EM NL SWN M++GYA + + + LF
Sbjct: 353 PRPSVILNNALMDMYAKCGCIDTAAGVFNEMSEGNLVSWNTMIAGYAAHGYAKQALNLFD 412
Query: 194 DMVGRGIKVDDVTSVIVISACGNLALLDMG-AMIHGFVCVSGLVPNMAVDNALLSMYAKC 370
M + ++ D +T V V+SACG+ L+ G V G+ P ++ + +
Sbjct: 413 QMKHKELEPDCITFVAVLSACGHGGLVSEGKEHFKSMVKDYGMEPKGEHYACMVDLLGRT 472
Query: 371 GDLRKSRRIFQSMKKW-NVISWNTIITGYAHHGH 469
G L ++ + +M + +W ++ HG+
Sbjct: 473 GRLEEAYDLIGNMPMVPSESAWGALLNASRMHGN 506
>gb|EXB60277.1| hypothetical protein L484_005875 [Morus notabilis]
Length = 720
Score = 156 bits (394), Expect = 3e-36
Identities = 76/168 (45%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD + ++ V +++M+ G+A+ GH+ AR+LFDEMP RN+ SWNAM++GYAQN Y + +
Sbjct: 274 FDGMVERNLVSWSTMVSGYAKAGHLEEARRLFDEMPERNVGSWNAMIAGYAQNMKYAEAI 333
Query: 182 KLFVDMVG-RGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSM 358
+LF M G G+ +++T V V+SAC +L LD+G + F+ G+ + + NAL+ M
Sbjct: 334 ELFRRMQGVEGLVPNEITLVSVLSACAHLGALDLGRWVDRFIRRKGMELSPLLGNALVDM 393
Query: 359 YAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
YAKCG + ++RRIF +M++ +VISW+ IITG A +GH EAL F+ M
Sbjct: 394 YAKCGCITEARRIFNTMQERDVISWSVIITGLAMNGHASEALERFDAM 441
Score = 66.6 bits (161), Expect = 3e-09
Identities = 36/134 (26%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G I AR++F+ M R++ SW+ +++G A N + ++ F M+ G++ +D+T
Sbjct: 394 YAKCGCITEARRIFNTMQERDVISWSVIITGLAMNGHASEALERFDAMIEHGMRPNDITF 453
Query: 236 VIVISACGNLALLDMGAMIHGFV-CVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMK 412
+ +++AC + L+D G + G+VP + ++ + ++ G L ++ ++ SM
Sbjct: 454 MGLLTACTHAGLVDKGLRYFDVMDRTYGIVPKVEHYGCVVDLLSRAGRLDEAEKLIISMP 513
Query: 413 -KWNVISWNTIITG 451
K NVI W ++ G
Sbjct: 514 VKSNVIVWGALLGG 527
Score = 63.2 bits (152), Expect = 4e-08
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Frame = +2
Query: 59 ARNGHIAAARQLFDE-MPHRNLYSWNAMLSGYAQNELYEDGMKLFV-DMVGRGIKV-DDV 229
A + ++ Q+F +P N++++NA+L +AQ+ +++ + F ++ + D+
Sbjct: 127 AAHANVRHGVQIFAHYLPTPNIFAYNAVLKAFAQHNDWDNTFRWFNRQLLDPNAPIPDEY 186
Query: 230 TSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ V+ AC L G +H V G N+ V N+L++ Y + G + +F M
Sbjct: 187 SFTSVLKACAGLGAAAEGRKVHCVVTKYGCDGNLFVRNSLVAFYFRIGCFDIAHEMFDEM 246
Query: 410 KKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
+V+SWNT++ GY G +A +F+ M
Sbjct: 247 PVRDVVSWNTLVAGYCLSGRVGDAQVVFDGM 277
>ref|XP_004509956.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cicer arietinum]
Length = 603
Score = 155 bits (392), Expect = 5e-36
Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 1/169 (0%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +PN+D + + +M+ G+A NG + +LFDEMP +N+YSWN ++ GY +NEL+ D +
Sbjct: 236 FNKMPNRDTMSWNAMLNGYAANGDVDLFEKLFDEMPEKNVYSWNGLIGGYVKNELFSDAL 295
Query: 182 KLFVDMVGRGIKV-DDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSM 358
+ F M+ G V +D T V V+SAC L LDMG +H + G N+ V NAL+ M
Sbjct: 296 ESFNRMLVEGHVVPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNALIDM 355
Query: 359 YAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
YAKCG + + +F + + ++ISWNTII G A HGH +AL LF+ MK
Sbjct: 356 YAKCGVIENAVVVFNGLDRKDIISWNTIINGLAVHGHAPDALSLFDRMK 404
Score = 77.4 bits (189), Expect = 2e-12
Identities = 47/162 (29%), Positives = 76/162 (46%)
Frame = +2
Query: 11 IPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLF 190
+ + DFV S I +R + AR+LFD++P N +WNAM GY+QNE + D + LF
Sbjct: 46 LEHNDFVA-PSFITTCSRLRRMQHARKLFDKIPEPNTATWNAMFRGYSQNEHHRDAVILF 104
Query: 191 VDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKC 370
+ + T ++I +C G +H G N V L+ MY+
Sbjct: 105 CKLNRVSAVPNCFTFPMIIKSCTKTKAFIEGEEVHCCAAKRGFKSNSFVATTLIDMYSTK 164
Query: 371 GDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFE 496
G + + ++F +++ NV+ W II+ Y G LF+
Sbjct: 165 GCVENAYKVFGEIRERNVVVWTAIISAYISCGDVTSGKRLFD 206
>ref|XP_006857535.1| hypothetical protein AMTR_s00061p00035580 [Amborella trichopoda]
gi|548861631|gb|ERN19002.1| hypothetical protein
AMTR_s00061p00035580 [Amborella trichopoda]
Length = 629
Score = 155 bits (391), Expect = 7e-36
Identities = 71/168 (42%), Positives = 113/168 (67%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD++P +D + +T+MI+ +A+ G + AAR LFD +PH+++ SW AMLSGYAQN ++ +
Sbjct: 188 FDTMPTRDIISWTAMIVAYAKGGDMEAARCLFDSLPHKDMVSWTAMLSGYAQNAKPQEAL 247
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+LF +M G+ +D+VT V I+AC L +L + IH V G ++ V +AL+ MY
Sbjct: 248 QLFEEMKAAGVPIDEVTLVGAINACAQLGVLHLARQIHSLVMDYGGPESVVVGSALIDMY 307
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
AKCG L+++ ++F+ M NV S++ +I +A HGHG+ AL LF +M+
Sbjct: 308 AKCGSLKEAYQVFEKMTVKNVFSYSAMIGSFAMHGHGRAALRLFSQMQ 355
>ref|XP_006306854.1| hypothetical protein CARUB_v10008399mg [Capsella rubella]
gi|482575565|gb|EOA39752.1| hypothetical protein
CARUB_v10008399mg [Capsella rubella]
Length = 740
Score = 155 bits (391), Expect = 7e-36
Identities = 70/169 (41%), Positives = 115/169 (68%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD ++D V YT++I G+A NG+I +A+++FDE+P +++ SWNA++SGYA+ Y++ +
Sbjct: 191 FDQSSHRDVVSYTALIKGYASNGYIESAQKMFDEIPVKDVVSWNALISGYAETGNYKEAL 250
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+LF +M+ +K D+ T V V+SACG A +++G +H ++ G N+ + NAL+ +Y
Sbjct: 251 ELFKEMMQTNVKPDESTMVTVLSACGQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 310
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
KCG++ + +F+ + +VISWNT+I GY H KEAL LF+EM R
Sbjct: 311 IKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 359
Score = 104 bits (260), Expect = 1e-20
Identities = 47/151 (31%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+ + G + A LF+ + ++++ SWN ++ GY LY++ + LF +M+ G ++VT
Sbjct: 310 YIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRLGEIPNEVTM 369
Query: 236 VIVISACGNLALLDMGAMIHGFV--CVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ ++ AC +L +D+G IH ++ + G+ ++ +L+ MYAKCGD+ ++++F SM
Sbjct: 370 LSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 429
Query: 410 KKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
++ SWN +I G+A HG A +F M
Sbjct: 430 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 460
Score = 75.5 bits (184), Expect = 7e-12
Identities = 40/140 (28%), Positives = 71/140 (50%)
Frame = +2
Query: 83 ARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGN 262
A +F+ + NL WN M G+A + + L+V M+ G+ + T ++ +C
Sbjct: 86 AISVFESIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKSCAK 145
Query: 263 LALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTI 442
G IHG V G ++ V +L++MY K G L +R++F +V+S+ +
Sbjct: 146 SRAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRLEDARKVFDQSSHRDVVSYTAL 205
Query: 443 ITGYAHHGHGKEALGLFEEM 502
I GYA +G+ + A +F+E+
Sbjct: 206 IKGYASNGYIESAQKMFDEI 225
Score = 73.6 bits (179), Expect = 3e-11
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIK 217
TS+I +A+ G I AA+Q+FD M +R+L SWNAM+ G+A + +F M GI+
Sbjct: 407 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMGKNGIE 466
Query: 218 VDDVTSVIVISACGNLALLDMGAMI-HGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRR 394
DD+T V ++SAC + +LD+G I V + P + ++ + G +++
Sbjct: 467 PDDITFVGLLSACSHSGMLDLGRHIFRSMTEVYKITPKLEHYGCMIDLLGHSGLFKEAEE 526
Query: 395 IFQSMK-KWNVISWNTIITGYAHHGH 469
+ SM+ + + W +++ HG+
Sbjct: 527 MINSMEMDPDGVIWCSLLKACKMHGN 552
>ref|XP_004237759.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Solanum lycopersicum]
Length = 528
Score = 154 bits (390), Expect = 9e-36
Identities = 72/167 (43%), Positives = 107/167 (64%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++F ++SM+ G+ + G + A +FD M RNL +WN+++ GY QN L E+ +
Sbjct: 193 FEIMPTRNFYVWSSMVSGYFKKGDVKGAEAIFDRMKMRNLVNWNSLICGYTQNGLCEEAL 252
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+ F M G++ D+VT V V+SAC LALLD+G IH + G+ N V N L+ MY
Sbjct: 253 EAFTKMQDEGLEPDEVTVVSVLSACSQLALLDIGKDIHEMIIQKGIELNQYVLNGLVDMY 312
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
AKCGDL +R IF+ M N +WN++I+G+A+HGH EA+ FE M
Sbjct: 313 AKCGDLSNARLIFEGMLLKNDAAWNSLISGFANHGHCVEAINFFERM 359
Score = 76.3 bits (186), Expect = 4e-12
Identities = 51/168 (30%), Positives = 86/168 (51%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P ++ + + +MI G ++G I A LF+ M + +WN M+ GYA+N
Sbjct: 98 FDYMPERNVITWNAMIGGCIKSGDIKTAFLLFENMSEKTTVTWNEMIDGYARNGDMVMAR 157
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
F + V VT +++ G + DM A F + N V ++++S Y
Sbjct: 158 SFFDRVPDESRNV--VTWSVMVD--GYASHGDMDAARELFEIMP--TRNFYVWSSMVSGY 211
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
K GD++ + IF MK N+++WN++I GY +G +EAL F +M+
Sbjct: 212 FKKGDVKGAEAIFDRMKMRNLVNWNSLICGYTQNGLCEEALEAFTKMQ 259
Score = 75.9 bits (185), Expect = 5e-12
Identities = 37/88 (42%), Positives = 53/88 (60%)
Frame = +2
Query: 239 IVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKW 418
+V+ AC +L++L +G +H SG N+ V ALL MY KCG++R +R++F M +
Sbjct: 45 LVLKACASLSMLSLGKALHAESVKSGFDCNVMVGTALLDMYGKCGEIRSARKVFDYMPER 104
Query: 419 NVISWNTIITGYAHHGHGKEALGLFEEM 502
NVI+WN +I G G K A LFE M
Sbjct: 105 NVITWNAMIGGCIKSGDIKTAFLLFENM 132
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/118 (25%), Positives = 63/118 (53%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G ++ AR +F+ M +N +WN+++SG+A + + + F M G+K +D+T
Sbjct: 312 YAKCGDLSNARLIFEGMLLKNDAAWNSLISGFANHGHCVEAINFFERMASSGVKPNDITF 371
Query: 236 VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ V+SAC + L++ G I + L ++ L+ + + G L ++ + + M
Sbjct: 372 LSVLSACAHGGLVEEGLEIFSRMEKYALTASIKHYGCLVDLLGRAGRLEEACDLMKGM 429
>gb|EXB90557.1| hypothetical protein L484_001711 [Morus notabilis]
Length = 543
Score = 154 bits (389), Expect = 1e-35
Identities = 72/168 (42%), Positives = 108/168 (64%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++ ++SM+ G+ + G + AR +FD +P RNL +WN+M+SGY QN E+ M
Sbjct: 218 FEQMPERNCFAWSSMVSGYCKQGDVEEARIIFDRIPVRNLVNWNSMISGYVQNGFCEEAM 277
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
K F +M +G + D+VT+V V+SAC L D+G IH + G+ N V NAL+ MY
Sbjct: 278 KAFDEMRAQGYEADEVTTVSVLSACARSGLFDVGREIHDMIIEKGMECNQIVLNALVDMY 337
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
AKCGDL +R +F+ M + N WN +I+G+A HG +EAL LF +M+
Sbjct: 338 AKCGDLACARSVFEGMTERNAACWNAMISGFAVHGQCEEALELFGKME 385
Score = 81.6 bits (200), Expect = 1e-13
Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P ++ V + +MI G+ +NG + +A LF+ M RN +WN M+ G+A++
Sbjct: 123 FDLMPERNVVTWNAMIGGYLKNGDVESAFVLFERMSLRNSVTWNEMIDGFARSGDTVSAR 182
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVC---------VSGLVP--N 328
KLF D V +K L+ M+ G+ C V +P N
Sbjct: 183 KLF-DCVPSEMK----------------NLITWTVMVDGYSCNGEMEKAREVFEQMPERN 225
Query: 329 MAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
++++S Y K GD+ ++R IF + N+++WN++I+GY +G +EA+ F+EM+
Sbjct: 226 CFAWSSMVSGYCKQGDVEEARIIFDRIPVRNLVNWNSMISGYVQNGFCEEAMKAFDEMR 284
Score = 69.3 bits (168), Expect = 5e-10
Identities = 39/127 (30%), Positives = 67/127 (52%)
Frame = +2
Query: 29 VCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGR 208
+ +++ +A+ G +A AR +F+ M RN WNAM+SG+A + E+ ++LF M
Sbjct: 328 IVLNALVDMYAKCGDLACARSVFEGMTERNAACWNAMISGFAVHGQCEEALELFGKMESS 387
Query: 209 GIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKS 388
DDVT + V+SAC +D G I + GLV N+ L+ + + G L+++
Sbjct: 388 EEMPDDVTFLSVLSACARGGFVDEGMDILSKMAKYGLVANVKHYGCLVDLLGRAGRLKQA 447
Query: 389 RRIFQSM 409
+ + M
Sbjct: 448 YDLIKRM 454
Score = 65.9 bits (159), Expect = 5e-09
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = +2
Query: 125 SWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVI--VISACGNLALLDMGAMIHG 298
+W + + ++ ++L+ + + +V ++ ++ AC +L G +H
Sbjct: 30 NWTVLTRNHISQGSPKEALRLYTQVRSSSKGIHNVLGLVPLILKACASLRFPKCGKALHA 89
Query: 299 FVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKE 478
SG + ++ V +L+ MYAKC ++ +R+ F M + NV++WN +I GY +G +
Sbjct: 90 ESIKSGTLFDVLVGTSLVDMYAKCREIFDARKAFDLMPERNVVTWNAMIGGYLKNGDVES 149
Query: 479 ALGLFEEM 502
A LFE M
Sbjct: 150 AFVLFERM 157
>ref|XP_002303374.2| hypothetical protein POPTR_0003s07960g [Populus trichocarpa]
gi|550342672|gb|EEE78353.2| hypothetical protein
POPTR_0003s07960g [Populus trichocarpa]
Length = 589
Score = 153 bits (387), Expect = 2e-35
Identities = 71/167 (42%), Positives = 106/167 (63%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ P + V +T+MI G+ + G I A +LF++MP +NL +WNAM++GY +N EDG+
Sbjct: 143 FEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGV 202
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
KLF MVG GI+ + T + C L+ L +G +H VC S L + +L+SMY
Sbjct: 203 KLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMY 262
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
KCG L ++F + + +V++WN +I+GYA HG GK+ALGLF+EM
Sbjct: 263 CKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEM 309
Score = 81.3 bits (199), Expect = 1e-13
Identities = 47/167 (28%), Positives = 84/167 (50%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F IP D V Y +M+ + RN ++ A+ F++MP ++ SWN M++G+AQN+ +
Sbjct: 50 FVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKAR 109
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
LF+ M + + VT +IS LD + +V A+++ Y
Sbjct: 110 DLFLIMPTKNV----VTWNAMISGYVECGDLDSALKLFEKAPFKSVV----AWTAMITGY 161
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
K G + + R+F+ M + N+++WN +I GY + ++ + LF M
Sbjct: 162 MKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTM 208
Score = 67.0 bits (162), Expect = 2e-09
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D TS+I + + G + +LF ++P R++ +WNAM+SGYAQ+ + + LF +M+
Sbjct: 251 DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMI 310
Query: 203 GRGIKVDDVTSVIVISACGNLALLDMGA-MIHGFVCVSGLVPNMAVDNALLSMYAKCGDL 379
+G+K D +T V V+ AC + D+G H GLV ++ + + G L
Sbjct: 311 EKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKL 370
Query: 380 RKSRRIFQSM 409
++ + + M
Sbjct: 371 VEAVDLIEKM 380
>gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 153 bits (387), Expect = 2e-35
Identities = 70/169 (41%), Positives = 113/169 (66%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD P++D V YT++I G+A G+I A+++FDE+P +++ SWNAM+SGYA+ Y++ +
Sbjct: 149 FDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEAL 208
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+LF DM+ ++ D+ T V V+SAC +++G +H ++ G N+ + NAL+ +Y
Sbjct: 209 ELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLY 268
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
+KCG+L + +F+ + +VISWNT+I GY H KEAL LF+EM R
Sbjct: 269 SKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 317
Score = 108 bits (270), Expect = 7e-22
Identities = 47/153 (30%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+++ G + A LF+ +P++++ SWN ++ GY LY++ + LF +M+ G +DVT
Sbjct: 268 YSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 327
Query: 236 VIVISACGNLALLDMGAMIHGFV--CVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ ++ AC +L +D+G IH ++ + G+ ++ +L+ MYAKCGD+ + ++F S+
Sbjct: 328 LSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSI 387
Query: 410 KKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
++ SWN +I G+A HG + +F M++
Sbjct: 388 LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420
Score = 75.1 bits (183), Expect = 9e-12
Identities = 40/140 (28%), Positives = 70/140 (50%)
Frame = +2
Query: 83 ARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGN 262
A +F+ + NL WN M G+A + +KL+V M+ G+ + T ++ +C
Sbjct: 44 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 103
Query: 263 LALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTI 442
G IHG V G ++ V +L+SMY + G L + ++F +V+S+ +
Sbjct: 104 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTAL 163
Query: 443 ITGYAHHGHGKEALGLFEEM 502
I GYA G+ + A +F+E+
Sbjct: 164 IKGYASRGYIENAQKMFDEI 183
Score = 69.7 bits (169), Expect = 4e-10
Identities = 40/146 (27%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIK 217
TS+I +A+ G I AA Q+F+ + H++L SWNAM+ G+A + + +F M GI+
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIE 424
Query: 218 VDDVTSVIVISACGNLALLDMGAMIHGFVCVS-GLVPNMAVDNALLSMYAKCGDLRKSRR 394
DD+T V ++SAC + +LD+G I + + P + ++ + G +++
Sbjct: 425 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 484
Query: 395 IFQSMK-KWNVISWNTIITGYAHHGH 469
+ +M+ + + + W +++ HG+
Sbjct: 485 MINTMEMEPDGVIWCSLLKACKMHGN 510
>emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 153 bits (387), Expect = 2e-35
Identities = 74/169 (43%), Positives = 110/169 (65%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+++P Q+ + +MI G+A+NG IA AR FD MP R+ SW A+++GYAQ+ E+ +
Sbjct: 239 FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEAL 298
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
LFV+M G +++ T +S C +A L++G +HG V +GL V NALL MY
Sbjct: 299 HLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMY 358
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
KCG++ + +F+ +++ V+SWNT+I GYA HG GKEAL LFE MK+
Sbjct: 359 CKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 407
Score = 97.1 bits (240), Expect = 2e-18
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 54/221 (24%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P +D V + +M+ G+A+NG++ A+++FDEMP +N SWN ML+ Y QN ED
Sbjct: 53 FDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDAR 112
Query: 182 KLFVD-----------MVG-----------RGI-----KVDDVTSVIVISA-CGNLALLD 277
+LF M+G RGI + D+V+ +IS N LL+
Sbjct: 113 RLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLE 172
Query: 278 MGAMIH---------GFVCVSGLVPNMAVD-----------------NALLSMYAKCGDL 379
+ VSG V N +D NA+++ Y +C +
Sbjct: 173 AQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRM 232
Query: 380 RKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
++R +F++M NV SWNT+ITGYA +G +A F+ M
Sbjct: 233 DQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 273
Score = 67.8 bits (164), Expect = 1e-09
Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 CYT--SMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVG 205
CY ++++ + + G+I A +F+ + + + SWN M++GYA++ ++ + LF M
Sbjct: 348 CYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 407
Query: 206 RGIKVDDVTSVIVISACGNLALLDMGA-MIHGFVCVSGLVPNMAVDNALLSMYAKCGDLR 382
GI DDVT V V+SAC + L+D G + G+ N ++ + + G L
Sbjct: 408 TGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLD 467
Query: 383 KSRRIFQSMK-KWNVISWNTIITGYAHHGH---GKEALGLFEEMK 505
++ + ++M + + +W ++ HG+ G++A + EM+
Sbjct: 468 DAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME 512
>ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 153 bits (387), Expect = 2e-35
Identities = 74/169 (43%), Positives = 110/169 (65%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+++P Q+ + +MI G+A+NG IA AR FD MP R+ SW A+++GYAQ+ E+ +
Sbjct: 320 FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEAL 379
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
LFV+M G +++ T +S C +A L++G +HG V +GL V NALL MY
Sbjct: 380 HLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMY 439
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
KCG++ + +F+ +++ V+SWNT+I GYA HG GKEAL LFE MK+
Sbjct: 440 CKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 488
Score = 97.1 bits (240), Expect = 2e-18
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 54/221 (24%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P +D V + +M+ G+A+NG++ A+++FDEMP +N SWN ML+ Y QN ED
Sbjct: 134 FDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDAR 193
Query: 182 KLFVD-----------MVG-----------RGI-----KVDDVTSVIVISA-CGNLALLD 277
+LF M+G RGI + D+V+ +IS N LL+
Sbjct: 194 RLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLE 253
Query: 278 MGAMIH---------GFVCVSGLVPNMAVD-----------------NALLSMYAKCGDL 379
+ VSG V N +D NA+++ Y +C +
Sbjct: 254 AQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRM 313
Query: 380 RKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
++R +F++M NV SWNT+ITGYA +G +A F+ M
Sbjct: 314 DQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM 354
Score = 79.3 bits (194), Expect = 5e-13
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+S+P + + + +MI G N ARQLF++MP R+L SWN M+SG +
Sbjct: 72 FNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAAR 131
Query: 182 KLFVDMVGRGIKVDDVTS--VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLS 355
LF M R DV S ++ N + + + C N N +L+
Sbjct: 132 LLFDQMPER-----DVVSWNAMLSGYAQNGYVKEAKEIFDEMPC-----KNSISWNGMLA 181
Query: 356 MYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
Y + G + +RR+F+S W +ISWN ++ GY +A G+F+ M
Sbjct: 182 AYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM 230
Score = 75.9 bits (185), Expect = 5e-12
Identities = 52/158 (32%), Positives = 80/158 (50%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D V + I RNG +A +LF+ MP R+ SWNAM+SG N+ + +LF M
Sbjct: 48 DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107
Query: 203 GRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLR 382
R D V+ ++IS C L ++ + +V NA+LS YA+ G ++
Sbjct: 108 TR----DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVS----WNAMLSGYAQNGYVK 159
Query: 383 KSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFE 496
+++ IF M N ISWN ++ Y +G ++A LFE
Sbjct: 160 EAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE 197
Score = 67.8 bits (164), Expect = 1e-09
Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Frame = +2
Query: 32 CYT--SMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVG 205
CY ++++ + + G+I A +F+ + + + SWN M++GYA++ ++ + LF M
Sbjct: 429 CYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKK 488
Query: 206 RGIKVDDVTSVIVISACGNLALLDMGA-MIHGFVCVSGLVPNMAVDNALLSMYAKCGDLR 382
GI DDVT V V+SAC + L+D G + G+ N ++ + + G L
Sbjct: 489 TGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLD 548
Query: 383 KSRRIFQSMK-KWNVISWNTIITGYAHHGH---GKEALGLFEEMK 505
++ + ++M + + +W ++ HG+ G++A + EM+
Sbjct: 549 DAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME 593
>ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|566161603|ref|XP_006385604.1| hypothetical protein
POPTR_0003s08540g [Populus trichocarpa]
gi|550342733|gb|ERP63401.1| hypothetical protein
POPTR_0003s08540g [Populus trichocarpa]
Length = 617
Score = 153 bits (386), Expect = 3e-35
Identities = 72/169 (42%), Positives = 110/169 (65%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P++D V + MI GFAR ++ A + FDEMP RN+ SWN ML+ Y + + Y D +
Sbjct: 278 FDKMPSRDVVSWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCL 337
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+ F MVG D+ + V V++AC L +LD G +H ++ +G+ P+M + ALL+MY
Sbjct: 338 RFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMY 397
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
AKCG + +R +F M + +V+SWN++I GY HGHG +AL +F EM++
Sbjct: 398 AKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEK 446
Score = 63.9 bits (154), Expect = 2e-08
Identities = 43/160 (26%), Positives = 66/160 (41%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D V + SMI G+ +NG + AR++FDEM R++++WN+M+SGY E LF M
Sbjct: 223 DLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMP 282
Query: 203 GRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLR 382
R + + MI GF A+ D+
Sbjct: 283 SRDV-------------------VSWNCMIDGF--------------------ARIKDVS 303
Query: 383 KSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
+ + F M NV+SWN ++ Y + L F+ M
Sbjct: 304 MAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMM 343
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/84 (29%), Positives = 52/84 (61%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D + T+++ +A+ G + AR++FD+MP +++ SWN+M+ GY + + +++F +M
Sbjct: 386 DMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREME 445
Query: 203 GRGIKVDDVTSVIVISACGNLALL 274
G +D T + V+SAC + ++
Sbjct: 446 KGGPMPNDATFMSVLSACSHSGMV 469
>ref|XP_002302197.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222843923|gb|EEE81470.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 440
Score = 153 bits (386), Expect = 3e-35
Identities = 73/168 (43%), Positives = 108/168 (64%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++F ++SMI G+ + G++ AR +FD +P RNL +WN+++ GY+QN E+ +
Sbjct: 110 FEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEAL 169
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
F M G + D+VT V V+SAC L+LLD+G +H +C G+ N V NAL+ MY
Sbjct: 170 DAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMY 229
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
AKCGDL +R IF+ M N WN++I+G+A HG KEAL F M+
Sbjct: 230 AKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRME 277
Score = 78.6 bits (192), Expect = 8e-13
Identities = 46/168 (27%), Positives = 92/168 (54%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++ V + +MI G+ +NG + +A LFD+M RN SW M+ G+A++
Sbjct: 15 FEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAAR 74
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+ F ++ V VT ++I + ++ ++ + N V ++++S Y
Sbjct: 75 RTFNEVPFELKNV--VTWTVMIDGYASKGEMEAARLLFEDMPQR----NFFVWSSMISGY 128
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
K G+++++R IF + N+++WN++I GY+ +G +EAL F +M+
Sbjct: 129 CKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQ 176
Score = 73.6 bits (179), Expect = 3e-11
Identities = 46/149 (30%), Positives = 77/149 (51%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G I +R+LF+ MP RN+ +WNAM+SGY +N + LF M R V +
Sbjct: 2 YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRN-AVSWIEM 60
Query: 236 VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKK 415
+ + G DM A F V + N+ ++ YA G++ +R +F+ M +
Sbjct: 61 IDGFARSG-----DMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQ 115
Query: 416 WNVISWNTIITGYAHHGHGKEALGLFEEM 502
N W+++I+GY G+ KEA +F+ +
Sbjct: 116 RNFFVWSSMISGYCKIGNVKEARAIFDRV 144
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/49 (48%), Positives = 36/49 (73%)
Frame = +2
Query: 356 MYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
MYAKCGD+ SR++F+ M + NV++WN +I+GY +G K A LF++M
Sbjct: 1 MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKM 49
Score = 57.0 bits (136), Expect = 3e-06
Identities = 33/131 (25%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G + AR +F+ M ++N WN+M+SG+A + ++ ++ F M K D++T
Sbjct: 229 YAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITF 288
Query: 236 VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM-K 412
+ V+SAC + +++G I + GL ++ L+ + + G ++ + + +SM
Sbjct: 289 LSVLSACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPM 348
Query: 413 KWNVISWNTII 445
K N W +
Sbjct: 349 KPNDTVWGAFL 359
>ref|XP_003524346.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 769
Score = 152 bits (385), Expect = 3e-35
Identities = 72/169 (42%), Positives = 110/169 (65%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+++P ++ + +MI G+ +NG IA AR+LFD MP R+ SW A++SGYAQN YE+ +
Sbjct: 323 FEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEAL 382
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+FV+M G + T +S C ++A L++G +HG V +G V NALL MY
Sbjct: 383 NMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMY 442
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
KCG ++ +F+ +++ +V+SWNT+I GYA HG G++AL LFE MK+
Sbjct: 443 FKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKK 491
Score = 104 bits (259), Expect = 1e-20
Identities = 53/169 (31%), Positives = 100/169 (59%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P +D + + +MI G+A+ G ++ A++LF+E P R++++W AM+SGY QN + ++
Sbjct: 230 FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEAR 289
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
K F +M +K + + ++ ++ G + C N++ N +++ Y
Sbjct: 290 KYFDEM---PVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC-----RNISSWNTMITGY 341
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
+ G + ++R++F M + + +SW II+GYA +GH +EAL +F EMKR
Sbjct: 342 GQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKR 390
Score = 99.0 bits (245), Expect = 6e-19
Identities = 58/167 (34%), Positives = 87/167 (52%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+S+P + V Y +MI G+ RN + AR LFD+MP R+L+SWN ML+GY +N +
Sbjct: 75 FNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAH 134
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
KLF M K D V+ ++S +D + + N N LL+ Y
Sbjct: 135 KLFDLMP----KKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGLLAAY 186
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
G L+++RR+F+S W +ISWN ++ GY +A LF+ M
Sbjct: 187 VHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 233
Score = 78.6 bits (192), Expect = 8e-13
Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D V + I RNGH +A ++F+ MP R+ S+NAM+SGY +N + LF M
Sbjct: 51 DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 110
Query: 203 GRGIKVDDVTSVIVISACGNLALLDMGAMIHGFV---------CVSGLVPNMAVD--NAL 349
R L M+ G+V + L+P V NA+
Sbjct: 111 ERD-------------------LFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAM 151
Query: 350 LSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFE 496
LS YA+ G + ++R +F M N ISWN ++ Y H+G KEA LFE
Sbjct: 152 LSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFE 200
Score = 58.9 bits (141), Expect = 7e-07
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = +2
Query: 68 GHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVI 247
G A +F+ + +++ SWN M++GYA++ + LF M G+K D++T V V+
Sbjct: 446 GSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVL 505
Query: 248 SACGNLALLDMGA-MIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMK-KWN 421
SAC + L+D G + + P ++ + + G L ++ + ++M
Sbjct: 506 SACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPG 565
Query: 422 VISWNTIITGYAHHGH 469
SW ++ HG+
Sbjct: 566 AASWGALLGASRIHGN 581
>gb|EOY16597.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
Length = 578
Score = 152 bits (385), Expect = 3e-35
Identities = 72/169 (42%), Positives = 106/169 (62%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++F ++SMI G+ + G + AR +FD +P RNL +WN+++SGYAQN E +
Sbjct: 225 FEMMPEKNFYVWSSMISGYCKRGDVKEARNIFDRIPVRNLVNWNSLISGYAQNGFCEKAL 284
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
++F M G + D+VT ++SAC L LD+G IH + G+V N V NALL MY
Sbjct: 285 EMFRKMQSEGFEPDEVTITSILSACAQLGELDVGKEIHYLIKEKGIVVNQFVLNALLDMY 344
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
AKCGDL +R IF+ M + WN++I+G+A HG EAL F M++
Sbjct: 345 AKCGDLAHARLIFEGMSRRTSACWNSMISGFALHGQSSEALEYFRRMEQ 393
Score = 80.5 bits (197), Expect = 2e-13
Identities = 52/186 (27%), Positives = 103/186 (55%), Gaps = 30/186 (16%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVD-MVGRGI 214
+S++ +++ G++ +R++FDEMP RN+ +WNAM+ GY +N + + LF + +VGR
Sbjct: 110 SSLLNMYSKCGNLIDSRKVFDEMPERNVVTWNAMIGGYLKNGDTKSALDLFENILVGR-- 167
Query: 215 KVDDVTSVIVISACG------------NLALLDMGAMIHGFVCVSG-------------- 316
+ VT + +I+ + L++ ++ V V G
Sbjct: 168 --NSVTWIEMINGFAKNGDTLKARRFFDKVPLELRNVVTWTVMVDGYTANGELEAARELF 225
Query: 317 -LVP--NMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALG 487
++P N V ++++S Y K GD++++R IF + N+++WN++I+GYA +G ++AL
Sbjct: 226 EMMPEKNFYVWSSMISGYCKRGDVKEARNIFDRIPVRNLVNWNSLISGYAQNGFCEKALE 285
Query: 488 LFEEMK 505
+F +M+
Sbjct: 286 MFRKMQ 291
Score = 71.2 bits (173), Expect = 1e-10
Identities = 37/129 (28%), Positives = 69/129 (53%)
Frame = +2
Query: 116 NLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIH 295
N SW+ ++ + + L+ + +G+ + V ++ AC + + G +H
Sbjct: 36 NQPSWSYIIRNRLSRGTPKQVLSLYTQIRQKGLYIL-VLVPLIFKACASASTQPFGKSLH 94
Query: 296 GFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGK 475
+G+ ++ ++LL+MY+KCG+L SR++F M + NV++WN +I GY +G K
Sbjct: 95 AESIKAGVAFDLHTASSLLNMYSKCGNLIDSRKVFDEMPERNVVTWNAMIGGYLKNGDTK 154
Query: 476 EALGLFEEM 502
AL LFE +
Sbjct: 155 SALDLFENI 163
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G +A AR +F+ M R WN+M+SG+A + + ++ F M D++T
Sbjct: 344 YAKCGDLAHARLIFEGMSRRTSACWNSMISGFALHGQSSEALEYFRRMEQSNEMPDEITF 403
Query: 236 VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM-K 412
+ ++SAC + +D G I + GLVP++ L+ + + G L+++ + + M
Sbjct: 404 LSLLSACAHGGFVDAGLDIFSKMEKYGLVPSVKHYGCLVDLLGRAGRLKEAFDLIKRMPM 463
Query: 413 KWNVISWNTII 445
K N + W ++
Sbjct: 464 KPNDVVWGALL 474
>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 152 bits (385), Expect = 3e-35
Identities = 73/168 (43%), Positives = 105/168 (62%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++F ++SMI G+ + G++ AR +FD +P RNL +WN+++SGYAQN E+ +
Sbjct: 247 FEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEAL 306
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+ F M G + D+VT V+SAC L LLD G IH + G+ N V N L+ MY
Sbjct: 307 EAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMY 366
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
AKCGDL +R IF+ M N WN++I+G+A HG KEAL F M+
Sbjct: 367 AKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRME 414
Score = 76.6 bits (187), Expect = 3e-12
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P ++ V + +MI G+ NG +A LF++M R +W M+ G+A++ E
Sbjct: 152 FDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETAR 211
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVP-NMAVDNALLSM 358
+ F D+ V VT +++ A ++ + G+ N ++++S
Sbjct: 212 RFFDDVPSELRNV--VTWTVMVDGYARNAEMEAAREV-----FEGMPQRNFFAWSSMISG 264
Query: 359 YAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
Y K G+++++R IF + N+++WN++I+GYA +G +EAL F +M+
Sbjct: 265 YCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQ 313
Score = 74.7 bits (182), Expect = 1e-11
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Frame = +2
Query: 23 DFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMV 202
D + TS++ +A+ G++ +R++FD MP RN +WNAM+ GY N + + LF M
Sbjct: 128 DVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS 187
Query: 203 GRGIKVDDVTSVIVISACGNLALL-DMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDL 379
R T+V I A D F V + N+ ++ YA+ ++
Sbjct: 188 IR-------TAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEM 240
Query: 380 RKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
+R +F+ M + N +W+++I+GY G+ KEA +F+ +
Sbjct: 241 EAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRI 281
Score = 74.3 bits (181), Expect = 2e-11
Identities = 36/129 (27%), Positives = 73/129 (56%)
Frame = +2
Query: 116 NLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIH 295
+L +W ++ Y + + ++ + +G+ + V +V+ AC +L+++ G +H
Sbjct: 59 SLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAP-LVLKACASLSIVKHGKALH 117
Query: 296 GFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGK 475
+G+ ++ + +L+ MYAKCG++ SR++F M + N ++WN +I GY +G K
Sbjct: 118 AESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSK 177
Query: 476 EALGLFEEM 502
A+ LFE+M
Sbjct: 178 SAVLLFEKM 186
Score = 59.7 bits (143), Expect = 4e-07
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G +A AR +F+ M HRN WN+M+SG+A + ++ ++ F M D++T
Sbjct: 366 YAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITF 425
Query: 236 VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMK- 412
+ V+SAC + ++ G I + GL + L+ + + G ++++ + + M
Sbjct: 426 LSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPV 485
Query: 413 KWNVISWNTII 445
K N + W ++
Sbjct: 486 KPNDVVWGALL 496
>gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 152 bits (385), Expect = 3e-35
Identities = 69/169 (40%), Positives = 114/169 (67%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD ++D V YT++I G+A NG+I +A+++FDE+P +++ SWNA++SGYA+ Y++ +
Sbjct: 161 FDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEAL 220
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+LF +M+ +K D+ T V V+SAC A +++G +H ++ G N+ + NAL+ +Y
Sbjct: 221 ELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLY 280
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
KCG++ + +F+ + +VISWNT+I GY H KEAL LF+EM R
Sbjct: 281 IKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329
Score = 107 bits (268), Expect = 1e-21
Identities = 47/153 (30%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+ + G + A LF+ + ++++ SWN ++ GY LY++ + LF +M+ G ++VT
Sbjct: 280 YIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTM 339
Query: 236 VIVISACGNLALLDMGAMIHGFV--CVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ ++ AC +L +D+G IH ++ + G+ ++ +L+ MYAKCGD+ ++++F SM
Sbjct: 340 LSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSM 399
Query: 410 KKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
++ SWN +I G+A HG A +F M++
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRK 432
Score = 75.5 bits (184), Expect = 7e-12
Identities = 41/140 (29%), Positives = 69/140 (49%)
Frame = +2
Query: 83 ARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGN 262
A +FD + NL WN M G+A + + L+V M+ G+ + T ++ AC
Sbjct: 56 AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAK 115
Query: 263 LALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTI 442
G IHG V G ++ V +L++MY K G +R++F +V+S+ +
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175
Query: 443 ITGYAHHGHGKEALGLFEEM 502
I GYA +G+ A +F+E+
Sbjct: 176 IKGYASNGYIXSAQKMFDEI 195
Score = 71.2 bits (173), Expect = 1e-10
Identities = 43/146 (29%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIK 217
TS+I +A+ G I AA+Q+FD M +R+L SWNAM+ G+A + +F M GI+
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436
Query: 218 VDDVTSVIVISACGNLALLDMGAMIHGFVCVS-GLVPNMAVDNALLSMYAKCGDLRKSRR 394
DD+T V ++SAC + +LD+G I + + P + ++ + G +++
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEE 496
Query: 395 IFQSMK-KWNVISWNTIITGYAHHGH 469
+ SM+ + + W +++ HG+
Sbjct: 497 MINSMEMDPDGVIWCSLLKACKMHGN 522
>emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 152 bits (385), Expect = 3e-35
Identities = 73/168 (43%), Positives = 105/168 (62%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
F+ +P ++F ++SMI G+ + G++ AR +FD +P RNL +WN+++SGYAQN E+ +
Sbjct: 118 FEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEAL 177
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+ F M G + D+VT V+SAC L LLD G IH + G+ N V N L+ MY
Sbjct: 178 EAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMY 237
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
AKCGDL +R IF+ M N WN++I+G+A HG KEAL F M+
Sbjct: 238 AKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRME 285
Score = 76.6 bits (187), Expect = 3e-12
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD +P ++ V + +MI G+ NG +A LF++M R +W M+ G+A++ E
Sbjct: 23 FDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETAR 82
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVP-NMAVDNALLSM 358
+ F D+ V VT +++ A ++ + G+ N ++++S
Sbjct: 83 RFFDDVPSELRNV--VTWTVMVDGYARNAEMEAAREV-----FEGMPQRNFFAWSSMISG 135
Query: 359 YAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMK 505
Y K G+++++R IF + N+++WN++I+GYA +G +EAL F +M+
Sbjct: 136 YCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQ 184
Score = 73.9 bits (180), Expect = 2e-11
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIK 217
TS++ +A+ G++ +R++FD MP RN +WNAM+ GY N + + LF M R
Sbjct: 4 TSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR--- 60
Query: 218 VDDVTSVIVISACGNLALL-DMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRR 394
T+V I A D F V + N+ ++ YA+ ++ +R
Sbjct: 61 ----TAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAARE 116
Query: 395 IFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
+F+ M + N +W+++I+GY G+ KEA +F+ +
Sbjct: 117 VFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRI 152
Score = 59.7 bits (143), Expect = 4e-07
Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+A+ G +A AR +F+ M HRN WN+M+SG+A + ++ ++ F M D++T
Sbjct: 237 YAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITF 296
Query: 236 VIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMK- 412
+ V+SAC + ++ G I + GL + L+ + + G ++++ + + M
Sbjct: 297 LSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPV 356
Query: 413 KWNVISWNTII 445
K N + W ++
Sbjct: 357 KPNDVVWGALL 367
Score = 56.6 bits (135), Expect = 3e-06
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +2
Query: 335 VDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEM 502
+ +L+ MYAKCG++ SR++F M + N ++WN +I GY +G K A+ LFE+M
Sbjct: 2 IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKM 57
>ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g08070 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15
[Arabidopsis thaliana] gi|332190118|gb|AEE28239.1|
chloroplast RNA editing factor [Arabidopsis thaliana]
Length = 741
Score = 152 bits (384), Expect = 4e-35
Identities = 71/169 (42%), Positives = 113/169 (66%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD P++D V YT++I G+A G+I A++LFDE+P +++ SWNAM+SGYA+ Y++ +
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+LF DM+ ++ D+ T V V+SAC +++G +H ++ G N+ + NAL+ +Y
Sbjct: 252 ELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLY 311
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
+KCG+L + +F+ + +VISWNT+I GY H KEAL LF+EM R
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Score = 110 bits (274), Expect = 3e-22
Identities = 48/153 (31%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+++ G + A LF+ +P++++ SWN ++ GY LY++ + LF +M+ G +DVT
Sbjct: 311 YSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 370
Query: 236 VIVISACGNLALLDMGAMIHGFV--CVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ ++ AC +L +D+G IH ++ + G+ ++ +L+ MYAKCGD+ + ++F S+
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 410 KKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
++ SWN +I G+A HG + LF M++
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRK 463
Score = 75.9 bits (185), Expect = 5e-12
Identities = 42/140 (30%), Positives = 69/140 (49%)
Frame = +2
Query: 83 ARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGN 262
A +F + NL WN M G+A + +KL+V M+ G+ + T V+ +C
Sbjct: 87 AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146
Query: 263 LALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTI 442
G IHG V G ++ V +L+SMY + G L + ++F +V+S+ +
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206
Query: 443 ITGYAHHGHGKEALGLFEEM 502
I GYA G+ + A LF+E+
Sbjct: 207 IKGYASRGYIENAQKLFDEI 226
Score = 68.6 bits (166), Expect = 8e-10
Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIK 217
TS+I +A+ G I AA Q+F+ + H++L SWNAM+ G+A + + LF M GI+
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 218 VDDVTSVIVISACGNLALLDMGAMIHGFVCVS-GLVPNMAVDNALLSMYAKCGDLRKSRR 394
DD+T V ++SAC + +LD+G I + + P + ++ + G +++
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 527
Query: 395 IFQSMK-KWNVISWNTIITGYAHHGH 469
+ M+ + + + W +++ HG+
Sbjct: 528 MINMMEMEPDGVIWCSLLKACKMHGN 553
>ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297338275|gb|EFH68692.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 741
Score = 152 bits (384), Expect = 4e-35
Identities = 70/169 (41%), Positives = 114/169 (67%)
Frame = +2
Query: 2 FDSIPNQDFVCYTSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGM 181
FD P++D V YT++I G+A G+I +A++LFDE+P +++ SWNAM+SGYA+ Y++ +
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 182 KLFVDMVGRGIKVDDVTSVIVISACGNLALLDMGAMIHGFVCVSGLVPNMAVDNALLSMY 361
+LF +M+ I+ D+ T V V+SAC +++G +H ++ G N+ + N+L+ +Y
Sbjct: 252 ELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLY 311
Query: 362 AKCGDLRKSRRIFQSMKKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
+KCG+L + +F+ + +VISWNT+I GY H KEAL LF+EM R
Sbjct: 312 SKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 360
Score = 103 bits (258), Expect = 2e-20
Identities = 46/153 (30%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +2
Query: 56 FARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTS 235
+++ G + A LF+ + ++++ SWN ++ GY LY++ + LF +M+ G + +DVT
Sbjct: 311 YSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTM 370
Query: 236 VIVISACGNLALLDMGAMIHGFV--CVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSM 409
+ ++ AC +L +D+G IH ++ + ++ +L+ MYAKCGD+ + ++F S+
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 410 KKWNVISWNTIITGYAHHGHGKEALGLFEEMKR 508
++ SWN +I G+A HG A +F M++
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRK 463
Score = 75.9 bits (185), Expect = 5e-12
Identities = 41/140 (29%), Positives = 71/140 (50%)
Frame = +2
Query: 83 ARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIKVDDVTSVIVISACGN 262
A +F+ + NL WN M G+A + +KL+V M+ G+ + T ++ +C
Sbjct: 87 AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146
Query: 263 LALLDMGAMIHGFVCVSGLVPNMAVDNALLSMYAKCGDLRKSRRIFQSMKKWNVISWNTI 442
G IHG V G ++ V +L+S+Y + G L +R++F +V+S+ +
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206
Query: 443 ITGYAHHGHGKEALGLFEEM 502
I GYA G+ + A LF+E+
Sbjct: 207 IKGYASRGYIESAQKLFDEI 226
Score = 65.9 bits (159), Expect = 5e-09
Identities = 34/85 (40%), Positives = 53/85 (62%)
Frame = +2
Query: 38 TSMIMGFARNGHIAAARQLFDEMPHRNLYSWNAMLSGYAQNELYEDGMKLFVDMVGRGIK 217
TS+I +A+ G I AA Q+F+ + H++L SWNAM+ G+A + + +F M GI+
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467
Query: 218 VDDVTSVIVISACGNLALLDMGAMI 292
DD+T V ++SAC +LD+G I
Sbjct: 468 PDDITFVGLLSACSRSGMLDLGRHI 492