BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00027060
         (568 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   134   2e-29
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   133   4e-29
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]   131   1e-28
emb|CAN65499.1| hypothetical protein VITISV_010671 [Vitis vinifera]   131   1e-28
emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera]   127   3e-27
emb|CAN77815.1| hypothetical protein VITISV_023977 [Vitis vinifera]   125   7e-27
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   125   1e-26
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi...   123   3e-26
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768...   123   3e-26
gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]               123   3e-26
emb|CAN63433.1| hypothetical protein VITISV_033829 [Vitis vinifera]   123   4e-26
gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis c...   122   6e-26
gb|ABW74566.1| integrase [Boechera divaricarpa]                       122   8e-26
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]      121   1e-25
gb|AGH20671.1| reverse transcriptase, partial [Thlaspi arvense]       121   1e-25
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi...   120   2e-25
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   120   3e-25
gb|AGH20669.1| reverse transcriptase, partial [Lepidium sativum]      119   4e-25
gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis c...   119   7e-25
emb|CAN62530.1| hypothetical protein VITISV_029281 [Vitis vinifera]   119   7e-25

>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  134 bits (337), Expect = 2e-29
 Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 16/145 (11%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P +KN++G  W+F+TK+    S  +HK+RLV+KGY + +G+ +                L
Sbjct: 954  PEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETVRTLL 1013

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
               AH+ +  +Q D+KSAF+NGEL EE Y SQPE F V +KE+HVY LK ALY LK APR
Sbjct: 1014 ALAAHMHWCVYQFDVKSAFLNGELVEEVYXSQPEGFIVPDKEEHVYRLKXALYGLKQAPR 1073

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLY 394
            AW+S+ID Y  + G+ + KS+ +LY
Sbjct: 1074 AWYSKIDSYFVENGFEKSKSEPNLY 1098


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  133 bits (334), Expect = 4e-29
 Identities = 66/145 (45%), Positives = 93/145 (64%), Gaps = 16/145 (11%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P +KN++G  W+F+TK+    S  +HK+RLV+KGY + +G+ +                L
Sbjct: 783  PEDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETVRTLL 842

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
               AH+ +  +Q D+KSAF+NGEL EE Y+SQ E F V  KE+HVY LKKALY LK APR
Sbjct: 843  ALAAHMHWCXYQFDVKSAFLNGELVEEVYVSQXEGFIVPXKEEHVYRLKKALYGLKQAPR 902

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLY 394
            AW+S+ID Y  + G+ + KS+ +LY
Sbjct: 903  AWYSKIDSYFVENGFERSKSEPNLY 927


>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
          Length = 1109

 Score =  131 bits (330), Expect = 1e-28
 Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 18/175 (10%)
 Frame = +2

Query: 14   NKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------LGF 145
            +KN++G  W+F+TK+    S  +HK++LV+KGY + +G+ +                L  
Sbjct: 717  DKNVIGVKWVFRTKYLADGSIQKHKAQLVAKGYAQQHGVDYDDTFSPIALFETVRTLLAL 776

Query: 146  TAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APRAW 325
             AH+ +  +Q D+KSAF+NGEL EE Y+SQPE F V  KE+HVY LKK L+ LK APRAW
Sbjct: 777  AAHMHWCVYQFDVKSAFLNGELVEEVYVSQPEGFIVPGKEEHVYRLKKTLFGLKQAPRAW 836

Query: 326  FSRIDKYLPKRGYTQCKSDHSLYCLKCNNKLGQIN*PSFIL--VK*VYFKKYQMA 484
            +S+ID Y  + G+ + KSD +LY LK  + +  +   SF++   K    KK++M+
Sbjct: 837  YSKIDSYFVENGFERSKSDPNLY-LKRQDDMIYMGSSSFLINEFKACMKKKFEMS 890


>emb|CAN65499.1| hypothetical protein VITISV_010671 [Vitis vinifera]
          Length = 750

 Score =  131 bits (329), Expect = 1e-28
 Identities = 69/151 (45%), Positives = 93/151 (61%), Gaps = 16/151 (10%)
 Frame = +2

Query: 5   KPSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF---------------- 136
           KP++K  +G  W+++TK N   S N+HKSRLV KGY + +G+ F                
Sbjct: 547 KPTHKKAIGVKWVYRTKLNCDGSINKHKSRLVVKGYAQMFGVDFSETFAPVGRLDTIRIL 606

Query: 137 LGFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*AP 316
           L   A + +K +Q D+KSAF+NG L EE ++ QPE F V  KED VY LKKALY LK AP
Sbjct: 607 LALAAQMGWKIYQPDVKSAFLNGYLEEEIFVEQPEGFVVKGKEDKVYHLKKALYGLKQAP 666

Query: 317 RAWFSRIDKYLPKRGYTQCKSDHSLYCLKCN 409
           RAW+SRI+ YL   G+ + +S+ +LY  K N
Sbjct: 667 RAWYSRINAYLLSLGFKKSQSESTLYIRKIN 697


>emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera]
          Length = 1102

 Score =  127 bits (318), Expect = 3e-27
 Identities = 69/155 (44%), Positives = 93/155 (60%), Gaps = 17/155 (10%)
 Frame = +2

Query: 5    KPSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF---------------- 136
            KP +K  +G  W+++TK N   S N+HK+RLV KGY + +G+ F                
Sbjct: 638  KPRHKRAIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFSETFAPVARLDTIRML 697

Query: 137  LGFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*AP 316
            L   A   +  HQMD+KSAF+NG L EE ++ QPE F V   E+ VY+LKKALY LK AP
Sbjct: 698  LALAAQKGWNIHQMDVKSAFLNGYLEEEIFVEQPEGFIVKGMEEKVYLLKKALYGLKQAP 757

Query: 317  RAWFSRIDKYLPKRGYTQCKSDHSLYCLK-CNNKL 418
            RAW+SRID +L   G+T+  S+ +LY  K C+  L
Sbjct: 758  RAWYSRIDSHLLGLGFTKSLSEFTLYFRKVCDETL 792


>emb|CAN77815.1| hypothetical protein VITISV_023977 [Vitis vinifera]
          Length = 1120

 Score =  125 bits (314), Expect = 7e-27
 Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 16/146 (10%)
 Frame = +2

Query: 5    KPSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF---------------- 136
            +P ++ ++G  W+++TK N   S N++K+RLV KGY + +G+ F                
Sbjct: 666  RPQHRKVIGVKWVYRTKLNADGSVNKYKARLVVKGYSQVFGVDFSEXFAPVARLDTIRML 725

Query: 137  LGFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*AP 316
            L  TA   +K +Q+D+K AF+NG L EE Y+ QPE F+V  +E+ VY+LKKALY LK AP
Sbjct: 726  LALTAQKGWKTYQLDVKXAFLNGYLQEEIYVEQPEGFQVKGQEEKVYLLKKALYGLKQAP 785

Query: 317  RAWFSRIDKYLPKRGYTQCKSDHSLY 394
            RAW+SRID++L   G+ +  S+ +LY
Sbjct: 786  RAWYSRIDEHLQSLGFVKSPSEATLY 811


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  125 bits (313), Expect = 1e-26
 Identities = 61/148 (41%), Positives = 89/148 (60%), Gaps = 16/148 (10%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P  KN++G  W+F+TK+N   S  +HK+RLV+KGY +  G+ F                L
Sbjct: 854  PEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETVRVVL 913

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
               A +    +Q D+KSAF+NG+L EE Y+SQP+ F +T  E+ VY L+KALY LK APR
Sbjct: 914  ALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQAPR 973

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            AW+S+ID +    G+ +  ++ +LY  K
Sbjct: 974  AWYSKIDSFFQGSGFRRSDNEPTLYLKK 1001


>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
            gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1334

 Score =  123 bits (309), Expect = 3e-26
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 16/148 (10%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P    ++G  W+FKTKFN     ++ K+RLV+KGY + YG+ F                L
Sbjct: 861  PEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLIL 920

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
            G  A   +   Q+D+KSAF++G+L E+ ++ QP+ F+V E+   VY LKKALY LK APR
Sbjct: 921  GLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPR 980

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            AW+SRI+++  K G+ +C  +H+L+  K
Sbjct: 981  AWYSRIEEFFGKEGFEKCYCEHTLFVKK 1008


>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
          Length = 1334

 Score =  123 bits (309), Expect = 3e-26
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 16/148 (10%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P    ++G  W+FKTKFN     ++ K+RLV+KGY + YG+ F                L
Sbjct: 861  PEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLIL 920

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
            G  A   +   Q+D+KSAF++G+L E+ ++ QP+ F+V E+   VY LKKALY LK APR
Sbjct: 921  GLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPR 980

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            AW+SRI+++  K G+ +C  +H+L+  K
Sbjct: 981  AWYSRIEEFFGKEGFEKCYCEHTLFVKK 1008


>gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]
          Length = 1207

 Score =  123 bits (309), Expect = 3e-26
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 16/148 (10%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P    ++G  W+FKTKFN     ++ K+RLV+KGY + YG+ F                L
Sbjct: 766  PEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLIL 825

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
            G  A   +   Q+D+KSAF++G+L E+ ++ QP+ F+V E+   VY LKKALY LK APR
Sbjct: 826  GLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPR 885

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            AW+SRI+++  K G+ +C  +H+L+  K
Sbjct: 886  AWYSRIEEFFGKEGFEKCYCEHTLFVKK 913


>emb|CAN63433.1| hypothetical protein VITISV_033829 [Vitis vinifera]
          Length = 1072

 Score =  123 bits (308), Expect = 4e-26
 Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 16/149 (10%)
 Frame = +2

Query: 5    KPSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF---------------- 136
            +PS+K  +G  W+++TK N   S N+HK+RLV KGY + +G+ F                
Sbjct: 682  RPSHKKPIGVKWVYRTKLNSDGSINKHKARLVVKGYAQMFGVDFSETFAPVARLDTIRML 741

Query: 137  LGFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*AP 316
            L   A  ++K +++D+KSAF+NG L EE ++ QPE F +  KE+ VY+LKKALY L+ AP
Sbjct: 742  LALAAQRKWKIYKLDVKSAFLNGYLEEEIFVEQPEGFAIKGKEEKVYLLKKALYGLRQAP 801

Query: 317  RAWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            RAW+SRID +L   G+ +  S+ +LY  K
Sbjct: 802  RAWYSRIDTHLLTLGFHKSLSEFTLYIEK 830


>gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 315

 Score =  122 bits (306), Expect = 6e-26
 Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 16/153 (10%)
 Frame = +2

Query: 8   PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
           P+    +G  W++K K N      RHK+RLV+KGY +  G+ +                +
Sbjct: 34  PNGHKAIGVKWVYKAKKNSKGEVERHKARLVAKGYSQRAGIDYDEVFAPVARLETVRLII 93

Query: 140 GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
              A   +K HQMD+KSAF+NGEL EE Y+ QP+ + V  +ED V  L+KALY LK APR
Sbjct: 94  SLAAQNVWKIHQMDVKSAFLNGELDEEVYIEQPQGYVVKGEEDKVLRLRKALYGLKQAPR 153

Query: 320 AWFSRIDKYLPKRGYTQCKSDHSLYCLKCNNKL 418
           AW +RIDKY  ++ + +C  +H+LY    NN +
Sbjct: 154 AWSTRIDKYFKEKNFIKCPYEHALYIKTQNNDI 186


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  122 bits (305), Expect = 8e-26
 Identities = 62/148 (41%), Positives = 89/148 (60%), Gaps = 16/148 (10%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P  K+ +G  W+FKTK+   D+  ++K+RLV KGY + YG+ +                L
Sbjct: 685  PEEKHSIGVKWVFKTKYQADDNIQKYKARLVVKGYAQEYGVDYEKTFSPVARFDTLRTLL 744

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
               A++ +  +Q D+KSAF+NGEL EE Y+ QPE F V  +E  VY L KALY LK APR
Sbjct: 745  ALGAYMHWPIYQFDVKSAFLNGELREEVYVDQPEGFIVEGREGFVYRLYKALYGLKQAPR 804

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            AW+++ID Y  + G+ + KS+ +LY  K
Sbjct: 805  AWYNKIDSYFAETGFERSKSEPTLYIKK 832


>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
          Length = 315

 Score =  121 bits (303), Expect = 1e-25
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
 Frame = +2

Query: 8   PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
           P+    +G  W++K K N      R+K+RLV+KGY +  G+ +                +
Sbjct: 34  PNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLII 93

Query: 140 GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
              A   ++ HQMD+KSAF+NG+L EE Y+ QP+ + V  +ED V  LKKALY LK APR
Sbjct: 94  SLAAQKSWRIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPR 153

Query: 320 AWFSRIDKYLPKRGYTQCKSDHSLYCLKCNNKL 418
           AW +RIDKY  ++G+ +C  +H+LY    NN +
Sbjct: 154 AWNTRIDKYFNEKGFIKCPYEHALYIKTQNNDI 186


>gb|AGH20671.1| reverse transcriptase, partial [Thlaspi arvense]
          Length = 315

 Score =  121 bits (303), Expect = 1e-25
 Identities = 61/153 (39%), Positives = 89/153 (58%), Gaps = 16/153 (10%)
 Frame = +2

Query: 8   PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
           P+    +G  W++K K N      R+K+RLV+KGY +  G+ +                +
Sbjct: 34  PNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQSAGIDYDEVFAPVARLETVRLII 93

Query: 140 GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
              A  +++ HQMD+KSAF+NG+L EE Y+ QP+ + V  KED V  LKKALY LK APR
Sbjct: 94  SLAAQNRWRIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGKEDKVLRLKKALYGLKQAPR 153

Query: 320 AWFSRIDKYLPKRGYTQCKSDHSLYCLKCNNKL 418
           AW +RIDKY  ++ + +C  +H+LY    NN +
Sbjct: 154 AWNTRIDKYFKEKSFIKCPYEHALYIKTQNNNI 186


>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1347

 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 16/149 (10%)
 Frame = +2

Query: 5    KPSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGL----------------AF 136
            KP  KN++   W++K K +   +  +HK+RLV++G+ + YG+                A 
Sbjct: 871  KPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIRAL 930

Query: 137  LGFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*AP 316
            L + A ++++ +QMD+KSAF+NGEL EE Y++QP  F +  KE+ V  L KALY LK AP
Sbjct: 931  LAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQAP 990

Query: 317  RAWFSRIDKYLPKRGYTQCKSDHSLYCLK 403
            RAW+ RID Y  + G+ +  +D +LY  K
Sbjct: 991  RAWYERIDSYFIQNGFARSMNDAALYSKK 1019


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  120 bits (300), Expect = 3e-25
 Identities = 60/145 (41%), Positives = 87/145 (60%), Gaps = 16/145 (11%)
 Frame = +2

Query: 8    PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
            P+    +G  W++K K N      R+K+RLV+KGYI+  G+ +                +
Sbjct: 873  PNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLII 932

Query: 140  GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
               A  ++K HQMD+KSAF+NG+L EE Y+ QP+ + V  +ED V  LKKALY LK APR
Sbjct: 933  SLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPR 992

Query: 320  AWFSRIDKYLPKRGYTQCKSDHSLY 394
            AW +RIDKY  ++ + +C  +H+LY
Sbjct: 993  AWNTRIDKYFKEKDFIKCPYEHALY 1017


>gb|AGH20669.1| reverse transcriptase, partial [Lepidium sativum]
          Length = 315

 Score =  119 bits (299), Expect = 4e-25
 Identities = 59/153 (38%), Positives = 90/153 (58%), Gaps = 16/153 (10%)
 Frame = +2

Query: 8   PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
           P+    +G  W++K K N      R+K+RLV+KGY +  G+ +                +
Sbjct: 34  PNGHKAIGVKWMYKAKKNANGEIERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLII 93

Query: 140 GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
              A  +++ HQMD+KSAF+NG+L+EE Y+ QP+ F +  +ED V  LKKALY LK APR
Sbjct: 94  SLAAQNKWRIHQMDVKSAFLNGDLNEEVYIEQPQGFIIKGEEDKVLRLKKALYGLKQAPR 153

Query: 320 AWFSRIDKYLPKRGYTQCKSDHSLYCLKCNNKL 418
           AW +RI+KY  ++ + +C  +H+LY    NN +
Sbjct: 154 AWNTRIEKYFKEKDFIKCPYEHALYIKTQNNDI 186


>gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 286

 Score =  119 bits (297), Expect = 7e-25
 Identities = 58/145 (40%), Positives = 87/145 (60%), Gaps = 16/145 (11%)
 Frame = +2

Query: 8   PSNKNIVGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------L 139
           P+ +  +G  W++K K N      R+K+RLV+KGY +  G+ +                +
Sbjct: 34  PNGQKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLII 93

Query: 140 GFTAHVQFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APR 319
              A  ++K HQMD+KSAF+NG+L EE Y+ QP+ + +  +ED V  LKKALY LK APR
Sbjct: 94  SLAAQNEWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIIKGEEDKVLKLKKALYGLKQAPR 153

Query: 320 AWFSRIDKYLPKRGYTQCKSDHSLY 394
           AW +RIDKY  ++ + +C  +H+LY
Sbjct: 154 AWNTRIDKYFKEKDFIKCPYEHALY 178


>emb|CAN62530.1| hypothetical protein VITISV_029281 [Vitis vinifera]
          Length = 646

 Score =  119 bits (297), Expect = 7e-25
 Identities = 61/144 (42%), Positives = 88/144 (61%), Gaps = 16/144 (11%)
 Frame = +2

Query: 26  VGCHWLFKTKFNVYDSSNRHKSRLVSKGYIR*YGLAF----------------LGFTAHV 157
           +G  W+++TK N   S N+HK+RLV KGY + +G+ F                L      
Sbjct: 404 IGVKWVYRTKLNSNGSVNKHKARLVVKGYAQMFGMNFSETFALVARLDTIRMLLALPTQK 463

Query: 158 QFKFHQMDIKSAFINGELSEEAYLSQPEEFKVTEKEDHVYVLKKALYDLK*APRAWFSRI 337
            +K +++D+KSAF+NG L EE ++ QPEEF V  KED VY L+KALY LK APRAW++RI
Sbjct: 464 GWKIYRLDVKSAFLNGYLEEEIFVEQPEEFAVKGKEDKVYQLRKALYGLKQAPRAWYNRI 523

Query: 338 DKYLPKRGYTQCKSDHSLYCLKCN 409
           + +L   G+ + +S+ +LY  K N
Sbjct: 524 NAHLLGLGFKKSQSESTLYIRKIN 547