BLASTX nr result
ID: Ephedra28_contig00026722
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00026722
(676 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 46 2e-12
gb|AAG60200.1|AC084763_20 putative gag-pol polyprotein [Oryza sa... 46 1e-11
emb|CAE03128.3| OJ000114_01.9 [Oryza sativa Japonica Group] 46 1e-11
gb|AAN05503.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 46 1e-11
ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group] g... 46 1e-11
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 48 2e-11
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 40 2e-11
emb|CAE04331.1| OSJNBb0016D16.22 [Oryza sativa Japonica Group] g... 46 4e-11
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 51 5e-11
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 49 6e-11
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 45 8e-11
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 49 1e-10
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 49 1e-10
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 49 1e-10
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 43 2e-10
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 43 2e-10
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 49 2e-10
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 49 2e-10
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana] 49 2e-10
gb|AAL79695.1|AC087599_14 putative gag-pol polyprotein [Oryza sa... 47 2e-10
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 45.8 bits (107), Expect(3) = 2e-12
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R N I ML+ SL K +W A YL+N P+ + K ++V +G
Sbjct: 502 NGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 561
Query: 399 PSSIDNLRVF 370
P++ +LRVF
Sbjct: 562 PANYSDLRVF 571
Score = 36.6 bits (83), Expect(3) = 2e-12
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3
Query: 302 IIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
I +GYL+G KG +W + + +ISRNV+F E
Sbjct: 592 IFLGYLSGVKGYKLWCPETKKVVISRNVVFHE 623
Score = 35.8 bits (81), Expect(3) = 2e-12
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG EL SK K++C+ +GI R T P+ Q
Sbjct: 470 DNGMELCSKIFKSYCKSEGIVRHYTVPHTPQ 500
>gb|AAG60200.1|AC084763_20 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 46.2 bits (108), Expect(3) = 1e-11
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +RRN + M ++L Q + +WG A + Y+LN P K L + + +G+
Sbjct: 813 NGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGR 872
Query: 399 PSSIDNLRVF 370
++ +LRVF
Sbjct: 873 KPAVSHLRVF 882
Score = 35.8 bits (81), Expect(3) = 1e-11
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = -3
Query: 305 GIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE-----WXXXXXXXXXXXTQDRNSKILA 141
G+ IGY G+K I D + R I+R+V+F+E W D + +
Sbjct: 904 GVFIGYAEGSKAYRILDPETQRVRITRDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVH 963
Query: 140 EE-----GKLSPNNTNAKVPIPNCTTEKEHPREPKDTLTNT 33
E G S + + VP P T HPR T T++
Sbjct: 964 FEGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSS 1004
Score = 33.1 bits (74), Expect(3) = 1e-11
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E + ++C ++GI R T+PY+ Q
Sbjct: 781 DNGGEFTAAEFASYCADEGIQRHYTAPYSPQ 811
>emb|CAE03128.3| OJ000114_01.9 [Oryza sativa Japonica Group]
Length = 1601
Score = 46.2 bits (108), Expect(3) = 1e-11
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +RRN + M ++L Q + +WG A + Y+LN P K L + + +G+
Sbjct: 803 NGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGR 862
Query: 399 PSSIDNLRVF 370
++ +LRVF
Sbjct: 863 KPAVSHLRVF 872
Score = 35.8 bits (81), Expect(3) = 1e-11
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = -3
Query: 305 GIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE-----WXXXXXXXXXXXTQDRNSKILA 141
G+ IGY G+K I D + R I+R+V+F+E W D + +
Sbjct: 894 GVFIGYAEGSKAYRILDPETQRVRITRDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVH 953
Query: 140 EE-----GKLSPNNTNAKVPIPNCTTEKEHPREPKDTLTNT 33
E G S + + VP P T HPR T T++
Sbjct: 954 FEGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSS 994
Score = 33.1 bits (74), Expect(3) = 1e-11
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E + ++C ++GI R T+PY+ Q
Sbjct: 771 DNGGEFTAAEFASYCADEGIQRHYTAPYSPQ 801
>gb|AAN05503.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1586
Score = 46.2 bits (108), Expect(3) = 1e-11
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +RRN + M ++L Q + +WG A + Y+LN P K L + + +G+
Sbjct: 803 NGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGR 862
Query: 399 PSSIDNLRVF 370
++ +LRVF
Sbjct: 863 KPAVSHLRVF 872
Score = 35.8 bits (81), Expect(3) = 1e-11
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = -3
Query: 305 GIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE-----WXXXXXXXXXXXTQDRNSKILA 141
G+ IGY G+K I D + R I+R+V+F+E W D + +
Sbjct: 894 GVFIGYAEGSKAYRILDPETQRVRITRDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVH 953
Query: 140 EE-----GKLSPNNTNAKVPIPNCTTEKEHPREPKDTLTNT 33
E G S + + VP P T HPR T T++
Sbjct: 954 FEGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSS 994
Score = 33.1 bits (74), Expect(3) = 1e-11
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E + ++C ++GI R T+PY+ Q
Sbjct: 771 DNGGEFTAAEFASYCADEGIQRHYTAPYSPQ 801
>ref|NP_001175469.1| Os08g0248500 [Oryza sativa Japonica Group]
gi|255678284|dbj|BAH94197.1| Os08g0248500 [Oryza sativa
Japonica Group]
Length = 1487
Score = 46.2 bits (108), Expect(3) = 1e-11
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +RRN + M ++L Q + +WG A + Y+LN P K L + + +G+
Sbjct: 704 NGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGR 763
Query: 399 PSSIDNLRVF 370
++ +LRVF
Sbjct: 764 KPAVSHLRVF 773
Score = 35.8 bits (81), Expect(3) = 1e-11
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Frame = -3
Query: 305 GIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE-----WXXXXXXXXXXXTQDRNSKILA 141
G+ IGY G+K I D + R I+R+V+F+E W D + +
Sbjct: 795 GVFIGYAEGSKAYRILDPETQRVRITRDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVH 854
Query: 140 EE-----GKLSPNNTNAKVPIPNCTTEKEHPREPKDTLTNT 33
E G S + + VP P T HPR T T++
Sbjct: 855 FEGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSS 895
Score = 33.1 bits (74), Expect(3) = 1e-11
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E + ++C ++GI R T+PY+ Q
Sbjct: 672 DNGGEFTAAEFASYCADEGIQRHYTAPYSPQ 702
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 47.8 bits (112), Expect(3) = 2e-11
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R N + + ML L +S+W A +YL+N P+ + +K ++ NGK
Sbjct: 583 NGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGK 642
Query: 399 PSSIDNLRVF 370
P++ NLRVF
Sbjct: 643 PANYQNLRVF 652
Score = 37.4 bits (85), Expect(3) = 2e-11
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -3
Query: 374 YLNLNYF---SHTRGEQEKA*LETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
Y NL F ++ Q K +G+ +GY G KG IW D+ + I+SR+V+F E
Sbjct: 646 YQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHE 704
Score = 29.6 bits (65), Expect(3) = 2e-11
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E SK + +C++ GI R +T + Q
Sbjct: 551 DNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQ 581
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 40.4 bits (93), Expect(3) = 2e-11
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R NH I E + ML+ L K++W A + L+N P+ + ++ S + +GK
Sbjct: 583 NGVAERMNHTIMEKVRRMLSYSGLPKTFWAEATNTVVTLINKTPSSAVNFEISDKRWSGK 642
Query: 399 PSSIDNLRVFESKLFFTY 346
+ L+ F + FTY
Sbjct: 643 SPVYNYLKRF-GCVAFTY 659
Score = 38.1 bits (87), Expect(3) = 2e-11
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -3
Query: 347 TRGEQEKA*LETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
T ++ K K+G+ +GYL+G KG +W ++ + +SRNV F+E
Sbjct: 658 TYADEGKLVPRAKKGVFLGYLSGEKGYKVWLLEERKCSVSRNVTFQE 704
Score = 35.8 bits (81), Expect(3) = 2e-11
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E ++ +FC+EKGI R +T Y Q
Sbjct: 551 DNGLEFCNQQFNDFCKEKGIVRHQTCAYTPQ 581
>emb|CAE04331.1| OSJNBb0016D16.22 [Oryza sativa Japonica Group]
gi|38346705|emb|CAE04855.2| OSJNBa0086O06.3 [Oryza
sativa Japonica Group]
Length = 1498
Score = 46.2 bits (108), Expect(3) = 4e-11
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +RRN + M ++L Q + +WG A + Y+LN P K L + + +G+
Sbjct: 700 NGVAERRNQTVVGMARALLKQRGMPAIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGR 759
Query: 399 PSSIDNLRVF 370
++ +LRVF
Sbjct: 760 KPAVSHLRVF 769
Score = 34.3 bits (77), Expect(3) = 4e-11
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Frame = -3
Query: 305 GIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE-----WXXXXXXXXXXXTQD-----RN 156
G+ IGY G+K I D + R I+R+V+F+E W D +
Sbjct: 791 GVFIGYAEGSKAYRILDPETQRVRIARDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVH 850
Query: 155 SKILAEEGKLSPNNTNAKVPIPNCTTEKEHPREPKDTLTNT 33
K G S + + VP P T HPR T T++
Sbjct: 851 FKGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSS 891
Score = 33.1 bits (74), Expect(3) = 4e-11
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E + ++C ++GI R T+PY+ Q
Sbjct: 668 DNGGEFTAAEFASYCADEGIQRHYTAPYSPQ 698
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 51.2 bits (121), Expect(3) = 5e-11
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 628 NGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 687
Query: 399 PSSIDNLRVFES 364
S + +LRVF S
Sbjct: 688 KSGVSHLRVFGS 699
Score = 32.3 bits (72), Expect(3) = 5e-11
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
++++ I IGY +KG +++ D + IISRN++F+E
Sbjct: 716 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 752
Score = 29.6 bits (65), Expect(3) = 5e-11
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D G E SK +C + GI R+ T P + Q
Sbjct: 596 DRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 49.3 bits (116), Expect(3) = 6e-11
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R N + E SM L + +W A YL+N P++ + +KC+ +V +GK
Sbjct: 554 NGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGK 613
Query: 399 PSSIDNLRVF 370
P NLRVF
Sbjct: 614 PVDYSNLRVF 623
Score = 36.6 bits (83), Expect(3) = 6e-11
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Frame = -3
Query: 377 EYLNLNYFSHTR----GEQEKA*LETK--EGIIIGYLAGTKGCLIWDTDK*REIISRNVI 216
+Y NL F + + E+ LE K E + IG+ G KG +WD +++ISR+V+
Sbjct: 616 DYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVV 675
Query: 215 FEE 207
F+E
Sbjct: 676 FDE 678
Score = 26.9 bits (58), Expect(3) = 6e-11
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERT 600
DNG E K C+++GITR T
Sbjct: 522 DNGGEYRDKKFLQLCKDEGITRHFT 546
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 45.4 bits (106), Expect(3) = 8e-11
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N++ +R N I ML+ L K +W A YL+N P + K ++V +G
Sbjct: 565 NDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGS 624
Query: 399 PSSIDNLRVF 370
P++ +LRVF
Sbjct: 625 PTNYSDLRVF 634
Score = 34.7 bits (78), Expect(3) = 8e-11
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 302 IIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
I +GY +G KG +W + + +ISRNV+F E
Sbjct: 655 IFLGYASGVKGYKLWCPETKKVVISRNVVFHE 686
Score = 32.3 bits (72), Expect(3) = 8e-11
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E SK K++C+ +GI T+P+ Q
Sbjct: 533 DNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQ 563
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 49.3 bits (116), Expect(3) = 1e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 628 NGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 687
Query: 399 PSSIDNLRVFES 364
+ +LRVF S
Sbjct: 688 KPGVSHLRVFGS 699
Score = 32.7 bits (73), Expect(3) = 1e-10
Identities = 28/100 (28%), Positives = 47/100 (47%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEEWXXXXXXXXXXXTQDRNSKILAE 138
++++ I IGY +KG +++ D + IISRN++F+E +D N E
Sbjct: 716 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE---EGEWDWNSNEEDYNFFPHFE 772
Query: 137 EGKLSPNNTNAKVPIPNCTTEKEHPREPKDTLTNTKIIEE 18
E K P T + P E P P + T+++I E+
Sbjct: 773 EDK--PEPTREEPP-------SEEPTTPPTSPTSSQIEEK 803
Score = 29.6 bits (65), Expect(3) = 1e-10
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D G E SK +C + GI R+ T P + Q
Sbjct: 596 DRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1272
Score = 49.3 bits (116), Expect(3) = 1e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 628 NGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 687
Query: 399 PSSIDNLRVFES 364
+ +LRVF S
Sbjct: 688 KPGVSHLRVFGS 699
Score = 32.3 bits (72), Expect(3) = 1e-10
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
++++ I IGY +KG +++ D + IISRN++F+E
Sbjct: 716 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 752
Score = 30.0 bits (66), Expect(3) = 1e-10
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D+G E SK +C + GI R+ T P + Q
Sbjct: 596 DSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 49.3 bits (116), Expect(3) = 1e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 125 NGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 184
Query: 399 PSSIDNLRVFES 364
+ +LRVF S
Sbjct: 185 KPGVSHLRVFGS 196
Score = 32.3 bits (72), Expect(3) = 1e-10
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
++++ I IGY +KG +++ D + IISRN++F+E
Sbjct: 213 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 249
Score = 30.0 bits (66), Expect(3) = 1e-10
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D+G E SK +C + GI R+ T P + Q
Sbjct: 93 DSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 123
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 43.1 bits (100), Expect(3) = 2e-10
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R N I +L+ L K +W A YL+N P+ + K ++V +G
Sbjct: 800 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 859
Query: 399 PSSIDNLRVF 370
P++ +LRVF
Sbjct: 860 PANYSDLRVF 869
Score = 34.3 bits (77), Expect(3) = 2e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E SK K++C+ +GI R T P+ Q
Sbjct: 768 DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQ 798
Score = 33.9 bits (76), Expect(3) = 2e-10
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 302 IIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
I +GY +G KG +W + + +ISRNV+F E
Sbjct: 890 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHE 921
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 43.1 bits (100), Expect(3) = 2e-10
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R N I +L+ L K +W A YL+N P+ + K ++V +G
Sbjct: 593 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 652
Query: 399 PSSIDNLRVF 370
P++ +LRVF
Sbjct: 653 PANYSDLRVF 662
Score = 34.3 bits (77), Expect(3) = 2e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E SK K++C+ +GI R T P+ Q
Sbjct: 561 DNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQ 591
Score = 33.9 bits (76), Expect(3) = 2e-10
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 302 IIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
I +GY +G KG +W + + +ISRNV+F E
Sbjct: 683 IFLGYPSGVKGYKLWCPETKKVVISRNVVFHE 714
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 49.3 bits (116), Expect(3) = 2e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 628 NGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 687
Query: 399 PSSIDNLRVFES 364
+ +LRVF S
Sbjct: 688 KPGVSHLRVFGS 699
Score = 32.3 bits (72), Expect(3) = 2e-10
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
++++ I IGY +KG +++ D + IISRN++F+E
Sbjct: 716 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 752
Score = 29.6 bits (65), Expect(3) = 2e-10
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D G E SK +C + GI R+ T P + Q
Sbjct: 596 DRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 49.3 bits (116), Expect(3) = 2e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 628 NGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 687
Query: 399 PSSIDNLRVFES 364
+ +LRVF S
Sbjct: 688 KPGVSHLRVFGS 699
Score = 32.3 bits (72), Expect(3) = 2e-10
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
++++ I IGY +KG +++ D + IISRN++F+E
Sbjct: 716 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 752
Score = 29.6 bits (65), Expect(3) = 2e-10
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D G E SK +C + GI R+ T P + Q
Sbjct: 596 DRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 49.3 bits (116), Expect(3) = 2e-10
Identities = 26/72 (36%), Positives = 36/72 (50%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +R+N I EM SML + L K W A YLLN P K + K + +G+
Sbjct: 567 NGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGR 626
Query: 399 PSSIDNLRVFES 364
+ +LRVF S
Sbjct: 627 KPGVSHLRVFGS 638
Score = 32.3 bits (72), Expect(3) = 2e-10
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = -3
Query: 317 ETKEGIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE 207
++++ I IGY +KG +++ D + IISRN++F+E
Sbjct: 655 KSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDE 691
Score = 29.6 bits (65), Expect(3) = 2e-10
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
D G E SK +C + GI R+ T P + Q
Sbjct: 535 DRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 565
>gb|AAL79695.1|AC087599_14 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|31433560|gb|AAP55058.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1168
Score = 46.6 bits (109), Expect(3) = 2e-10
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -2
Query: 579 NEITKRRNHNIFEMIHSMLNQESL*KSWWGYACLIITYLLNFWPNKILKYKCSLQVMNGK 400
N + +RRN + M ++L Q + +WG A + Y+LN P K L + + +G+
Sbjct: 467 NGVVERRNQTVVGMARALLKQRGMPAIFWGQAVVTAAYILNRSPTKALDGRTPYEAWHGR 526
Query: 399 PSSIDNLRVF 370
++ +LRVF
Sbjct: 527 KPAVSHLRVF 536
Score = 33.1 bits (74), Expect(3) = 2e-10
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 674 DNGAELVSKNMKNFCREKGITRERTSPYNSQ 582
DNG E + ++C ++GI R T+PY+ Q
Sbjct: 435 DNGGEFTAAEFASYCADEGIQRHYTTPYSPQ 465
Score = 31.6 bits (70), Expect(3) = 2e-10
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Frame = -3
Query: 305 GIIIGYLAGTKGCLIWDTDK*REIISRNVIFEE-----WXXXXXXXXXXXTQDRNSKILA 141
G+ IGY G+K I D + R +R+V+F+E W D + +
Sbjct: 558 GVFIGYAEGSKAYRILDPETQRVRTARDVVFDEGRGWVWDKAVDDGSTPTYDDFTVEYVH 617
Query: 140 EEGK---LSPNNTNAKVPIPNC--TTEKEHPREPKDTLTNTKIIEEQ 15
EG S ++ + P P T HPR T T++ + Q
Sbjct: 618 FEGAGGVGSSSSPSVSTPAPESPPTPTPTHPRATTSTTTSSSSTQPQ 664