BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00026602
         (611 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305144.1| transcription factor-related family protein ...   117   3e-24
ref|XP_001751645.1| predicted protein [Physcomitrella patens] gi...   117   3e-24
ref|XP_004505045.1| PREDICTED: general transcription factor IIH ...   115   7e-24
ref|XP_006467817.1| PREDICTED: general transcription factor IIH ...   114   2e-23
ref|XP_003637396.1| General transcription factor IIH subunit [Me...   114   2e-23
gb|EOY28282.1| Transcription factor-related isoform 4 [Theobroma...   114   3e-23
gb|EOY28281.1| Transcription factor-related isoform 3 [Theobroma...   114   3e-23
gb|EOY28280.1| Transcription factor-related isoform 2 [Theobroma...   114   3e-23
gb|EOY28279.1| Transcription factor-related isoform 1 [Theobroma...   114   3e-23
ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Sela...   114   3e-23
gb|ESW31311.1| hypothetical protein PHAVU_002G227900g [Phaseolus...   113   4e-23
ref|XP_003601071.1| General transcription factor IIH subunit [Me...   113   4e-23
ref|XP_006451124.1| hypothetical protein CICLE_v10009035mg [Citr...   112   6e-23
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...   111   1e-22
ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Caps...   111   2e-22
ref|XP_004232855.1| PREDICTED: general transcription factor IIH ...   111   2e-22
ref|XP_006347058.1| PREDICTED: general transcription factor IIH ...   110   2e-22
gb|EMJ15015.1| hypothetical protein PRUPE_ppa005553mg [Prunus pe...   110   3e-22
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]   110   4e-22
ref|XP_006653885.1| PREDICTED: general transcription factor IIH ...   109   7e-22

>ref|XP_002305144.1| transcription factor-related family protein [Populus trichocarpa]
           gi|222848108|gb|EEE85655.1| transcription factor-related
           family protein [Populus trichocarpa]
          Length = 449

 Score =  117 bits (292), Expect = 3e-24
 Identities = 70/207 (33%), Positives = 115/207 (55%), Gaps = 8/207 (3%)
 Frame = +1

Query: 10  DTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLNLPTAED 189
           D L++  + ++V  K  E      KLNQ FQ  +RK +  G   P   M++ + LP+ E+
Sbjct: 80  DRLIQLRIFIEVSDKKRESSY---KLNQTFQANLRKHLTNGGVLPRETMAAVVKLPSLEE 136

Query: 190 LEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLNFLL 357
           L+ Y   +W+  L +L++   + K T     + KIF    L      +  +T  G  FLL
Sbjct: 137 LDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQRDRDAPRLTEGGFQFLL 196

Query: 358 MDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVVKTL 531
           MD   Q+W+++REYI  ++E   +  DLISFL+EL F++ G+ Y++  L   ++  +K L
Sbjct: 197 MDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDL 256

Query: 532 SSFGLVKFQ--INENYFIPTELSSILA 606
           +  GLVK Q    E++FIPT+L++ L+
Sbjct: 257 AELGLVKLQQGRKESWFIPTKLATNLS 283


>ref|XP_001751645.1| predicted protein [Physcomitrella patens]
           gi|162697626|gb|EDQ83962.1| predicted protein
           [Physcomitrella patens]
          Length = 462

 Score =  117 bits (292), Expect = 3e-24
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 12/213 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVL--QKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHL--NL 174
           H   +  L +++V+  +++    +    +N K Q Q+R+A+  G  PP + +S  +   +
Sbjct: 75  HQIAIDRLEQLRVILPERSDLSNSTHYLMNPKLQKQLRQALSTGGGPPRDVVSESVAARV 134

Query: 175 PTAEDLEKYTWNKWQDVLQVLVN----PDTSTKETLVFKIFSETKLLSSAGSSLDITASG 342
           P + DLE Y   +W+ VL  LV+         K   + K+F  + LL+    S  +T  G
Sbjct: 135 PNSADLENYAMKQWESVLLQLVDCAADGPAGPKNPFIIKVFQRSGLLTPENESPSLTDLG 194

Query: 343 LNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKE 516
             FLLMD   Q+W ++REY+  +++      +L+ FL+ELGF++VG+ YS+  L  + ++
Sbjct: 195 FQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGFLLELGFHLVGEAYSVNSLSPALQK 254

Query: 517 VVKTLSSFGLVKFQ--INENYFIPTELSSILAS 609
           V+  L++ GLVK Q  + E+++IPT+L+S L++
Sbjct: 255 VLDELAALGLVKLQQGMKESWYIPTKLASNLSA 287


>ref|XP_004505045.1| PREDICTED: general transcription factor IIH subunit 4-like [Cicer
           arietinum]
          Length = 451

 Score =  115 bits (289), Expect = 7e-24
 Identities = 68/211 (32%), Positives = 117/211 (55%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  L++++V  +  + +  +  K+N  +Q  ++K +  G   P   M S++   LP
Sbjct: 75  HKVAIDRLVQLRVFVEALDRKNEKTYKVNSTYQRSLQKLLVHGGTLPRESMPSNITVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGL 345
           T EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +T SG 
Sbjct: 135 TLEDLETYALEQWECFLLQLISPSHVEKTLNISSSLMKVFQRRLLSQRDKEAPKLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L   ++ +
Sbjct: 195 QFLLMDTNAQLWYIIREYISNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTDFQRNI 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           +K L+  GLVK Q    E++FIPT+L++ L+
Sbjct: 255 IKDLADLGLVKLQQGRKESWFIPTKLATNLS 285


>ref|XP_006467817.1| PREDICTED: general transcription factor IIH subunit 4-like [Citrus
           sinensis]
          Length = 450

 Score =  114 bits (286), Expect = 2e-23
 Identities = 71/210 (33%), Positives = 115/210 (54%), Gaps = 10/210 (4%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPT 180
           H   +  L+++++  +  + E    +LN  FQ+ +RK +  G   P   M S +   LPT
Sbjct: 75  HRVAIDRLVQLRLFSEEKKKETTY-RLNSTFQSNLRKHLIYGGALPREPMPSGITARLPT 133

Query: 181 AEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLN 348
            EDLE Y   +W+  L  L++   + + T     + K+F    L      +  +T SG  
Sbjct: 134 LEDLEAYAIGQWECFLLQLISSTQAERPTNFSSSMMKVFQRGLLSRRDKEAPRLTESGFQ 193

Query: 349 FLLMDMECQMWFVLREYIYKTQEA--KRVDLISFLIELGFYIVGKPYSILDLPVSRKEVV 522
           FLLMD   Q+W+++REYI  +QE    + DLISFL+EL F++ G+ Y++  L   +K ++
Sbjct: 194 FLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQKSMI 253

Query: 523 KTLSSFGLVKFQ--INENYFIPTELSSILA 606
           K  +  GLVK Q    EN+FIPT+L++ L+
Sbjct: 254 KDFADLGLVKLQQGRKENWFIPTKLATNLS 283


>ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355503331|gb|AES84534.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 451

 Score =  114 bits (286), Expect = 2e-23
 Identities = 68/211 (32%), Positives = 116/211 (54%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  L+++ V  +  + +  +  K+N  +Q  ++K +  G   P   M S++   LP
Sbjct: 75  HKVAIDRLVQLGVFVEALDSKNGKTYKVNPTYQRSLQKLLVHGGTLPRESMPSNITVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGL 345
           T EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +T SG 
Sbjct: 135 TLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L   ++ +
Sbjct: 195 QFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNI 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           +K L+  GLVK Q    E++FIPT+L++ L+
Sbjct: 255 IKDLADLGLVKLQQGRKESWFIPTKLATNLS 285


>gb|EOY28282.1| Transcription factor-related isoform 4 [Theobroma cacao]
          Length = 445

 Score =  114 bits (284), Expect = 3e-23
 Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPT 180
           H   +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S++   LPT
Sbjct: 75  HKVAIDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPT 134

Query: 181 AEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLN 348
           +E+L+ Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  
Sbjct: 135 SEELDAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQ 194

Query: 349 FLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVV 522
           FLLMD   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++
Sbjct: 195 FLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMI 254

Query: 523 KTLSSFGLVKFQ--INENYFIPTELSSILA 606
           K LS  GLVK Q    +++FIPT+L++ L+
Sbjct: 255 KDLSDLGLVKLQQGRKDSWFIPTKLATNLS 284


>gb|EOY28281.1| Transcription factor-related isoform 3 [Theobroma cacao]
          Length = 406

 Score =  114 bits (284), Expect = 3e-23
 Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPT 180
           H   +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S++   LPT
Sbjct: 36  HKVAIDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPT 95

Query: 181 AEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLN 348
           +E+L+ Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  
Sbjct: 96  SEELDAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQ 155

Query: 349 FLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVV 522
           FLLMD   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++
Sbjct: 156 FLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMI 215

Query: 523 KTLSSFGLVKFQ--INENYFIPTELSSILA 606
           K LS  GLVK Q    +++FIPT+L++ L+
Sbjct: 216 KDLSDLGLVKLQQGRKDSWFIPTKLATNLS 245


>gb|EOY28280.1| Transcription factor-related isoform 2 [Theobroma cacao]
          Length = 412

 Score =  114 bits (284), Expect = 3e-23
 Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPT 180
           H   +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S++   LPT
Sbjct: 36  HKVAIDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPT 95

Query: 181 AEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLN 348
           +E+L+ Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  
Sbjct: 96  SEELDAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQ 155

Query: 349 FLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVV 522
           FLLMD   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++
Sbjct: 156 FLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMI 215

Query: 523 KTLSSFGLVKFQ--INENYFIPTELSSILA 606
           K LS  GLVK Q    +++FIPT+L++ L+
Sbjct: 216 KDLSDLGLVKLQQGRKDSWFIPTKLATNLS 245


>gb|EOY28279.1| Transcription factor-related isoform 1 [Theobroma cacao]
          Length = 451

 Score =  114 bits (284), Expect = 3e-23
 Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPT 180
           H   +  L+++++L+     +    KLN  FQ  +RK +  G   P   M S++   LPT
Sbjct: 75  HKVAIDRLIQLRILEVIDRKKETSYKLNPTFQTNLRKHLIYGGILPREPMPSNVTVRLPT 134

Query: 181 AEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLN 348
           +E+L+ Y   +W+  L  L++   + K T     + +IF    L      +  +T SG  
Sbjct: 135 SEELDAYAHEQWECFLLQLISSGQAEKPTNFSSSMMRIFQRGLLCQREKEAPRLTESGFQ 194

Query: 349 FLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVV 522
           FLLMD   Q+W+++REYI  ++E    + DLI+FL+EL F+  G+ Y++  L   ++ ++
Sbjct: 195 FLLMDTNAQLWYIIREYISNSEEQGVDQADLIAFLLELSFHTTGEAYNMNTLTDDQRAMI 254

Query: 523 KTLSSFGLVKFQ--INENYFIPTELSSILA 606
           K LS  GLVK Q    +++FIPT+L++ L+
Sbjct: 255 KDLSDLGLVKLQQGRKDSWFIPTKLATNLS 284


>ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
           gi|302808297|ref|XP_002985843.1| hypothetical protein
           SELMODRAFT_123271 [Selaginella moellendorffii]
           gi|300146350|gb|EFJ13020.1| hypothetical protein
           SELMODRAFT_123271 [Selaginella moellendorffii]
           gi|300147366|gb|EFJ14030.1| hypothetical protein
           SELMODRAFT_121159 [Selaginella moellendorffii]
          Length = 459

 Score =  114 bits (284), Expect = 3e-23
 Identities = 72/206 (34%), Positives = 120/206 (58%), Gaps = 12/206 (5%)
 Frame = +1

Query: 28  LLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHL--NLPTAEDLEKY 201
           L E K+L +  E      ++N KFQ Q+R A+  G   P + +   +   +P+A++L+ Y
Sbjct: 90  LPEEKILSRKKE---THYRVNPKFQEQLRLALSTGLGTPRDPLPPDIAVRMPSAKELDDY 146

Query: 202 TWNKWQDVLQVLVN---PDTSTKET--LVFKIFSETKLLSSAGSSLDITASGLNFLLMDM 366
              KW+     LVN   PD  +  T   + ++F +  LL+S G    IT +G  FLL+D 
Sbjct: 147 ATEKWEAWFSSLVNFASPDGPSASTNGFIVQLFQKADLLTS-GQDPKITPAGFQFLLLDR 205

Query: 367 ECQMWFVLREYIYKTQEAKRVD---LISFLIELGFYIVGKPYSILDLPVSRKEVVKTLSS 537
             Q+W V+REY+ +  EA+++D   LI FL+E+GFY VG+PYS+  LP S++   + L+ 
Sbjct: 206 NSQLWRVIREYV-QYAEARQIDTGELIRFLLEIGFYSVGEPYSMDSLPNSQRNFAEELAM 264

Query: 538 FGLVKFQ--INENYFIPTELSSILAS 609
            G+++ Q  + + +FIPT L++ L++
Sbjct: 265 LGVLQLQKGMKDRWFIPTRLATGLSA 290


>gb|ESW31311.1| hypothetical protein PHAVU_002G227900g [Phaseolus vulgaris]
          Length = 451

 Score =  113 bits (283), Expect = 4e-23
 Identities = 67/211 (31%), Positives = 117/211 (55%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   V  L++++V  +  + +  +  K+N  +Q  ++K + +G   P   M S++   LP
Sbjct: 75  HRVAVDRLVQLRVFLEAVDRKNEKTYKVNPTYQRSLQKLLVQGGTLPRESMPSNITVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGL 345
           T E+LE Y   +W+  L  L++P  + K     + + K+F    L      +  +T SG 
Sbjct: 135 TLENLEAYALEQWEWFLLQLISPAQADKPLNISSSLMKVFQRRLLSQRDKEAPKLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ YSI  L   ++ +
Sbjct: 195 QFLLMDTNAQLWYIIREYISNSEERGVDAADLISFMLELSFHVIGEAYSISTLTDFQRSI 254

Query: 520 VKTLSSFGLVKFQINE--NYFIPTELSSILA 606
           +  L+  GLVK Q     ++FIPT+L++ L+
Sbjct: 255 INDLADLGLVKLQQGRKGSWFIPTKLATNLS 285


>ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355490119|gb|AES71322.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 452

 Score =  113 bits (283), Expect = 4e-23
 Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 12/212 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN--KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--L 174
           H   +  L++++V  + ++        ++N  +Q  ++  +  G   P   M S++   L
Sbjct: 75  HKVAIDRLVQLRVFVEAFDNRKNEKTYQVNSTYQKSLQNLLVHGGTLPRESMPSNITVRL 134

Query: 175 PTAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASG 342
           PT EDLE Y   +W+  L  L++P    K     + + K+F    L      +  +T SG
Sbjct: 135 PTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDREAPKLTESG 194

Query: 343 LNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKE 516
             FLLMD   Q+W+++REYI  ++E      DLISF++EL F+++G+ Y+I  L   ++ 
Sbjct: 195 FQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRN 254

Query: 517 VVKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           ++K L+  GLVK Q    E++FIPT+L++ L+
Sbjct: 255 IIKDLADLGLVKLQQGRKESWFIPTKLATNLS 286


>ref|XP_006451124.1| hypothetical protein CICLE_v10009035mg [Citrus clementina]
           gi|567918238|ref|XP_006451125.1| hypothetical protein
           CICLE_v10009035mg [Citrus clementina]
           gi|557554350|gb|ESR64364.1| hypothetical protein
           CICLE_v10009035mg [Citrus clementina]
           gi|557554351|gb|ESR64365.1| hypothetical protein
           CICLE_v10009035mg [Citrus clementina]
          Length = 301

 Score =  112 bits (281), Expect = 6e-23
 Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 10/210 (4%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LPT 180
           H   +  L+++++  +  + E    +LN  FQ+ ++K +  G   P   M S +   LPT
Sbjct: 75  HKVAIDRLVQLRLFSEEKKKETTY-RLNSTFQSNLQKHLINGGALPREPMPSGITARLPT 133

Query: 181 AEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGLN 348
            EDLE Y   +W+  L  L++   + + T     + K+F    L+     +  +T SG  
Sbjct: 134 LEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQRDKEAPRLTESGFQ 193

Query: 349 FLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEVV 522
           FLLMD   Q+W+++REYI  +QE    + DLISFL+EL F++ G+ Y++  L   ++ ++
Sbjct: 194 FLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAYNLNTLSEIQRSMI 253

Query: 523 KTLSSFGLVKFQ--INENYFIPTELSSILA 606
           K  +  GLVK Q    E++FIPT+L++ L+
Sbjct: 254 KDFADLGLVKLQQGRKESWFIPTKLATNLS 283


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
           gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
           [Ricinus communis]
          Length = 451

 Score =  111 bits (278), Expect = 1e-22
 Identities = 68/211 (32%), Positives = 117/211 (55%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEA-VRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHL--NLP 177
           H   +  L ++++  +  + +  +  KLN  FQ  ++K +  G   P   ++S++   LP
Sbjct: 75  HRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGVLPGEPLASNIAVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGL 345
           T E+L+ Y   +W+  L  L+N   + + T     + KIF    L      +  +T SG 
Sbjct: 135 TLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLTQRDKEAPRLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQEA--KRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI  ++E      DLISFL+EL F+I G+ Y+++ L   ++ +
Sbjct: 195 QFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITGEAYNMIMLTEFQRNM 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           +K L+  GLVK Q    E++FIPT+L++ L+
Sbjct: 255 IKDLADLGLVKLQQGRKESWFIPTKLATNLS 285


>ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Capsella rubella]
           gi|482553708|gb|EOA17901.1| hypothetical protein
           CARUB_v10006310mg [Capsella rubella]
          Length = 452

 Score =  111 bits (277), Expect = 2e-22
 Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQK-TYEGEAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSH--LNLP 177
           H   +  L+++++  + T         LN  FQN ++K I  G   P   M+S   + LP
Sbjct: 75  HRVAIDRLIQLRIFSEITDRKRGTSYSLNPTFQNNLQKHIISGGVLPREPMNSDNSIKLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTK----ETLVFKIFSETKLLSSAGSSLDITASGL 345
           + ++LE Y   +W+  L  L+N     K       + KIF    L         +T SG 
Sbjct: 135 SLQELETYALKQWERFLLQLINSGQGDKLNGISESMMKIFQRGLLSQRDKDGPRLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQEAK--RVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI   +E K    DLISFL+EL F++ G+ Y+   L   +K  
Sbjct: 195 QFLLMDTNAQLWYIIREYISNAEERKVDPADLISFLLELSFHVTGEAYNSNTLTELQKNT 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           +K L   GLVK Q  +  N+FIPT+L++ L+
Sbjct: 255 LKDLEDLGLVKLQQGMKGNWFIPTKLATNLS 285


>ref|XP_004232855.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           lycopersicum]
          Length = 453

 Score =  111 bits (277), Expect = 2e-22
 Identities = 73/213 (34%), Positives = 119/213 (55%), Gaps = 13/213 (6%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEA-VRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  L++++V+ +T++ +     +LN KFQ  ++K I  G   P   M S++   LP
Sbjct: 75  HKVAIDRLIQLRVMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLD--ITAS 339
           + E+LE Y   +W+  L  L++   + K T +     KIF +  LLS         +T S
Sbjct: 135 SLEELEAYAVEQWECFLLNLISSSEAGKTTNISSSMMKIF-QRGLLSQRDDREPPRLTES 193

Query: 340 GLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRK 513
           G  FLLMD   Q+W+++REYI   +E      DLI+FL+EL F++ GK Y+   +   ++
Sbjct: 194 GFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQR 253

Query: 514 EVVKTLSSFGLVKFQ--INENYFIPTELSSILA 606
            ++K LS  GLVK Q    E++FIPT+L++ L+
Sbjct: 254 SIIKDLSDLGLVKLQQGRKESWFIPTKLATNLS 286


>ref|XP_006347058.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           tuberosum]
          Length = 453

 Score =  110 bits (276), Expect = 2e-22
 Identities = 73/213 (34%), Positives = 118/213 (55%), Gaps = 13/213 (6%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  L++++V+ +T++ +     +LN KFQ  ++K I  G   P   M S++   LP
Sbjct: 75  HKVAIDRLIQLRVMTETFDRKKEATYQLNPKFQFNLQKHIVHGGILPREPMPSNITVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTKETLV----FKIFSETKLLSSAGSSLD--ITAS 339
           + E+LE Y   +W+  L  L++     K T +     KIF +  LLS         +T S
Sbjct: 135 SLEELEAYAVEQWECFLLNLISSSEGGKTTNISSSMMKIF-QRGLLSQRDDREPPRLTES 193

Query: 340 GLNFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRK 513
           G  FLLMD   Q+W+++REYI   +E      DLI+FL+EL F++ GK Y+   +   ++
Sbjct: 194 GFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQR 253

Query: 514 EVVKTLSSFGLVKFQ--INENYFIPTELSSILA 606
            ++K LS  GLVK Q    E++FIPT+L++ L+
Sbjct: 254 SIIKDLSDLGLVKLQQGRKESWFIPTKLATNLS 286


>gb|EMJ15015.1| hypothetical protein PRUPE_ppa005553mg [Prunus persica]
          Length = 455

 Score =  110 bits (275), Expect = 3e-22
 Identities = 69/211 (32%), Positives = 113/211 (53%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  L+++++  +T + +      LN  FQ  ++K +  G   P   M S++   LP
Sbjct: 75  HRVAIDRLIQLRIFTETVDRKRETTYTLNPIFQTNLKKLLLYGVVLPREPMPSNVTVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDT----STKETLVFKIFSETKLLSSAGSSLDITASGL 345
           ++EDLE +   +W+  L  L+N       S   + + KIF    L      +  +T SG 
Sbjct: 135 SSEDLEAFALGQWECFLLQLINSSQIERPSNISSSMMKIFQRGLLSQRDKEAPRLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI  ++E      DLISFL+EL F++ G+ Y+I  L   +K  
Sbjct: 195 QFLLMDTNAQLWYIIREYISNSEERGVDSADLISFLLELSFHVTGEAYNINTLTEVQKNT 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           +K L+  GLVK Q    +++FIPT L++ L+
Sbjct: 255 IKDLADLGLVKLQQGRKDSWFIPTRLATNLS 285


>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score =  110 bits (274), Expect = 4e-22
 Identities = 69/211 (32%), Positives = 115/211 (54%), Gaps = 11/211 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEGEAVRN-KLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  L++++V  +T + +   + +LN  FQ  ++K +  G   P   M S++   LP
Sbjct: 75  HRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVLPREPMPSNITVRLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTKET----LVFKIFSETKLLSSAGSSLDITASGL 345
           + +DLE Y   +W+  L  L++   + K T     + K+F    L      +  +T SG 
Sbjct: 135 SLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLTQREKEAPRLTESGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLMD   Q+W+++REYI  ++E      DLISFL+EL F++ G+ Y+I  L   ++  
Sbjct: 195 QFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNT 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILA 606
           +K L   GLVK Q    E++FIPT+L++ L+
Sbjct: 255 IKDLVDLGLVKLQQGRKESWFIPTKLATNLS 285


>ref|XP_006653885.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryza
           brachyantha]
          Length = 451

 Score =  109 bits (272), Expect = 7e-22
 Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 11/212 (5%)
 Frame = +1

Query: 7   HDTLVRSLLEVKVLQKTYEG-EAVRNKLNQKFQNQMRKAIEKGFKPPNNFMSSHLN--LP 177
           H   +  LL+++V  +  +  + V  K+NQKFQ  M+K +  G   P   + S +   LP
Sbjct: 75  HKVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSLPREPIPSSVTARLP 134

Query: 178 TAEDLEKYTWNKWQDVLQVLVNPDTSTKETL----VFKIFSETKLLSSAGSSLDITASGL 345
           T  +LE Y   +W+  L  L+N     + T     + + F    L S  G +  +T +G 
Sbjct: 135 TLAELEAYALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLSSRDGEAPRLTENGF 194

Query: 346 NFLLMDMECQMWFVLREYIYKTQE--AKRVDLISFLIELGFYIVGKPYSILDLPVSRKEV 519
            FLLM+   Q+W+++REYI  ++E      +LISFL+EL F+ +G+ YS+  L   ++  
Sbjct: 195 QFLLMETNAQLWYIMREYISSSEERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNA 254

Query: 520 VKTLSSFGLVKFQ--INENYFIPTELSSILAS 609
           ++ L+  GLVK Q    +++FIPT+L++ L++
Sbjct: 255 IRDLAELGLVKLQQGRKDSWFIPTKLATNLSA 286