BLASTX nr result
ID: Ephedra28_contig00026595
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00026595
(766 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 80 6e-13
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 79 1e-12
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 79 2e-12
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus... 79 2e-12
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 79 2e-12
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 78 4e-12
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 77 6e-12
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 77 8e-12
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 76 1e-11
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 75 2e-11
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 75 2e-11
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 75 2e-11
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 75 2e-11
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 74 5e-11
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 72 2e-10
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 70 6e-10
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 70 8e-10
ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutr... 70 1e-09
ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha... 70 1e-09
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 69 1e-09
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 80.5 bits (197), Expect = 6e-13
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-S 198
R+ ++YG K I ++ L+ +A WF +CC+ + ASAWYHVTYHP+Y+ EG +
Sbjct: 884 RDNRRYGDTKDRILISVKSLQKEAKEWFESCCQA-KEKQRLASAWYHVTYHPSYFQEGIT 942
Query: 199 LLSFPWIKYKLLLNIKRFN 255
LSFPWI +LLNIK N
Sbjct: 943 CLSFPWIVADILLNIKSAN 961
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 79.3 bits (194), Expect = 1e-12
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++YG MK I +++L+ +A WF + C+ H Y ASAWYHVTYHP Y+ E S
Sbjct: 1041 RDNRRYGDMKDRILISVKDLQLEAKEWFESDCQPHE-YQLMASAWYHVTYHPKYYIESST 1099
Query: 199 LLSFPWIKYKLLLNIKRFNE 258
LSFPWI +LL+IK N+
Sbjct: 1100 FLSFPWIVGDILLHIKSANK 1119
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 79.0 bits (193), Expect = 2e-12
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-S 198
R+ ++YG MK I + L+N+A WF + CK + ASAWYHVTY P+Y E +
Sbjct: 1050 RDNRRYGDMKDRILLSAKNLQNEAKEWFGSSCK-ENEHPQLASAWYHVTYSPSYCKERMA 1108
Query: 199 LLSFPWIKYKLLLNIKRFNETKA 267
LLSFPWI +LLNIK N KA
Sbjct: 1109 LLSFPWIVGDILLNIKSVNSRKA 1131
>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 79.0 bits (193), Expect = 2e-12
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++YG MK I ++ L+ +A WF C+ H Y ASAWYHVTYHP+Y+ + S
Sbjct: 1036 RDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPHE-YRPMASAWYHVTYHPSYYCQESS 1094
Query: 199 -LLSFPWIKYKLLLNIKRFNE 258
LSFPWI ++LL IK N+
Sbjct: 1095 CFLSFPWIVGEVLLQIKSVNK 1115
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 79.0 bits (193), Expect = 2e-12
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++YG MK I +++L+ +A WF + C+ H Y ASAWYHVTYHP Y E S
Sbjct: 1040 RDNRRYGDMKDRILISVKDLQREAKEWFESDCQPHE-YQLMASAWYHVTYHPKYSHESST 1098
Query: 199 LLSFPWIKYKLLLNIKRFN 255
LSFPWI +LL+IK N
Sbjct: 1099 FLSFPWIVGDILLHIKSVN 1117
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 77.8 bits (190), Expect = 4e-12
Identities = 43/91 (47%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-- 195
R+ ++YG MK I ++ L+ +A F N CKV + ASAWYHVTYHPNY E
Sbjct: 1042 RDNRRYGDMKDRILLSMKNLQREARERFENSCKVGE-HQRLASAWYHVTYHPNYCQESMK 1100
Query: 196 SLLSFPWIKYKLLLNIKRFNETKACQQREAP 288
S LSFPWI +LL IK N + QRE P
Sbjct: 1101 SCLSFPWIVGDILLKIKSVNSREI--QREQP 1129
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 77.0 bits (188), Expect = 6e-12
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 IREKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG- 195
+R+ ++YG MK+ I +++L+ +A WF + C + ASAWY+VTYHPNY+ E
Sbjct: 1033 LRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERM 1092
Query: 196 SLLSFPWIKYKLLLNIKRFNE 258
+ LSFPWI +LL IK N+
Sbjct: 1093 NSLSFPWIVGDILLRIKSRNK 1113
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 76.6 bits (187), Expect = 8e-12
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 IREKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG- 195
+R+ ++YG MK+ I +++L+ +A WF + C + ASAWY+VTYHPNY+ E
Sbjct: 1033 LRDNRRYGEMKERIVLSVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQERM 1092
Query: 196 SLLSFPWIKYKLLLNIKRFNE 258
+ LSFPWI +LL +K N+
Sbjct: 1093 NSLSFPWIVGDILLRVKSRNK 1113
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 76.3 bits (186), Expect = 1e-11
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-S 198
R+ +KYG +K I ++ L+ +A WF + C + ASAWYHVTYHP Y+ E +
Sbjct: 1029 RDNRKYGDVKDRILVSLKNLKKEAKEWFESSCNP-TEHQCMASAWYHVTYHPTYFHERMN 1087
Query: 199 LLSFPWIKYKLLLNIKRFNETKA 267
LSFPWI +LLNIK N A
Sbjct: 1088 CLSFPWIVGDILLNIKSLNSRNA 1110
>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
max]
Length = 941
Score = 75.5 bits (184), Expect = 2e-11
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++YG MK I ++ L+ +A WF C+ H Y ASAWYHVTYHP+Y+ S
Sbjct: 858 RDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHE-YKPMASAWYHVTYHPSYYCRESP 916
Query: 199 -LLSFPWIKYKLLLNIK 246
LSFPWI ++LL I+
Sbjct: 917 CFLSFPWIVGEILLQIR 933
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 75.5 bits (184), Expect = 2e-11
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++YG MK I ++ L+ +A WF C+ H Y ASAWYHVTYHP+Y+ S
Sbjct: 1038 RDNRRYGDMKDRILLSVKNLQREAKEWFETSCEPHE-YKPMASAWYHVTYHPSYYCRESP 1096
Query: 199 -LLSFPWIKYKLLLNIK 246
LSFPWI ++LL I+
Sbjct: 1097 CFLSFPWIVGEILLQIR 1113
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 75.5 bits (184), Expect = 2e-11
Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGSL 201
R+ +KYG MK I ++ LR + WF N C N ASAWYHVTYHP+Y+ E
Sbjct: 1034 RDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDP-LNRRMMASAWYHVTYHPSYFKEDMF 1092
Query: 202 -LSFPWIKYKLLLNIKRFNETK 264
SFPW +LLNIK N +
Sbjct: 1093 YFSFPWAVSDVLLNIKAMNSKR 1114
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 75.1 bits (183), Expect = 2e-11
Identities = 35/84 (41%), Positives = 54/84 (64%)
Frame = +1
Query: 1 KSSKDFIREKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPN 180
K S R+ +KYG +K I ++ L+ +A WF + C+ +++ + ASAWYHVTY P+
Sbjct: 1020 KKSGYLQRDNRKYGEVKDRILIAVKNLQREAQGWFKSSCEPNQS-SKLASAWYHVTYRPD 1078
Query: 181 YWSEGSLLSFPWIKYKLLLNIKRF 252
++S+ + SFPWI +LLNIK F
Sbjct: 1079 HFSKVNFFSFPWILADVLLNIKAF 1102
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 73.9 bits (180), Expect = 5e-11
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-S 198
R+ ++Y +K I ++ L+ +A WF C+ ASAWYHVTYHPNY+ + +
Sbjct: 1032 RDNRRYFEVKDRILLAVKSLQREAKGWFEGSCEAMEQQK-MASAWYHVTYHPNYYQKSIN 1090
Query: 199 LLSFPWIKYKLLLNIKRFNETK 264
LSFPWIK +LLNIK N +
Sbjct: 1091 CLSFPWIKGDILLNIKSINSQR 1112
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 72.4 bits (176), Expect = 2e-10
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-S 198
R+ ++YG MK I ++ L+ +A F + C V + ASAWYHVTYHP+Y+ + +
Sbjct: 1035 RDNRRYGDMKDRISLSLKNLQKEAKGLFESSCPVSE-HQRMASAWYHVTYHPSYFQQDMN 1093
Query: 199 LLSFPWIKYKLLLNIKRFNETK 264
LSFPWI +LLNIK N +
Sbjct: 1094 CLSFPWIVGDILLNIKALNNPR 1115
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 70.5 bits (171), Expect = 6e-10
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++YG MK I ++ L+ +A WF C+ R Y ASAWYHVTYH +++ + S
Sbjct: 1037 RDNRRYGDMKDRILLSVKNLQREAKEWFETSCQP-REYKPMASAWYHVTYHRSHYCQESP 1095
Query: 199 -LLSFPWIKYKLLLNIKRFN 255
LSFPWI +LL I+ N
Sbjct: 1096 CFLSFPWIVGDILLQIRSVN 1115
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 70.1 bits (170), Expect = 8e-10
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSE-GS 198
R+ ++Y +K I + L + WF +CC+ ++ ASAWYHVTYHP+Y E +
Sbjct: 1036 RDNRRYFELKDRILVSAKSLHKEVKGWFTSCCQ-EDDHQKLASAWYHVTYHPSYCHESAN 1094
Query: 199 LLSFPWIKYKLLLNIKRFNETK 264
L FPW+ +LLN+K N K
Sbjct: 1095 CLGFPWVVGDILLNMKSHNTRK 1116
>ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutrema salsugineum]
gi|557097970|gb|ESQ38406.1| hypothetical protein
EUTSA_v10028370mg [Eutrema salsugineum]
Length = 1124
Score = 69.7 bits (169), Expect = 1e-09
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSE-GS 198
R+ ++YG MK I +++L+ +A WF CK + ASAWY+VTY+P++ E
Sbjct: 1038 RDNRRYGDMKDRITLSVKDLQREAMGWFDKSCKEEQQRKKLASAWYYVTYNPSHRDEKPK 1097
Query: 199 LLSFPWIKYKLLLNIKRFNETKACQ 273
LSFPWI +LL IK N + Q
Sbjct: 1098 FLSFPWIVGDVLLGIKAENAERERQ 1122
>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical
proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
2 [Arabidopsis thaliana]
Length = 1133
Score = 69.7 bits (169), Expect = 1e-09
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEG-S 198
R+ ++YG MK I +++L +A WF C+ + ASAWY+VTY+PN+ E +
Sbjct: 1039 RDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLT 1098
Query: 199 LLSFPWIKYKLLLNIKRFN 255
LSFPWI +LL+IK N
Sbjct: 1099 FLSFPWIVGDVLLDIKAEN 1117
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 69.3 bits (168), Expect = 1e-09
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +1
Query: 22 REKKKYGGMKQEIQEKIRELRNDAHNWFINCCKVHRNYAAFASAWYHVTYHPNYWSEGS- 198
R+ ++Y +K I + L+ + WF CCK + ASAWYHVTYHP+Y EGS
Sbjct: 1037 RDNRRYFELKDRILVSAKSLQKEVKGWFTGCCK-EDEHKKLASAWYHVTYHPSY-CEGSA 1094
Query: 199 -LLSFPWIKYKLLLNIKRFNETK 264
L FPW+ +LL+IK N K
Sbjct: 1095 NCLGFPWVVGDILLDIKLHNTRK 1117