BLASTX nr result
ID: Ephedra28_contig00026585
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra28_contig00026585 (653 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 84 3e-14 ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 84 4e-14 gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi... 79 9e-13 gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 78 2e-12 gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo... 77 3e-12 ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 77 6e-12 ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 75 2e-11 ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 75 2e-11 ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub... 74 3e-11 gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope... 74 3e-11 gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma... 74 5e-11 ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi... 72 2e-10 ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 71 2e-10 ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub... 71 3e-10 ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub... 71 3e-10 ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub... 71 3e-10 ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub... 71 3e-10 gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 71 3e-10 ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 71 3e-10 ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr... 70 4e-10 >ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza brachyantha] Length = 1492 Score = 84.3 bits (207), Expect = 3e-14 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 2/219 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQG-KDCCKKILLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + + PL LQE+L + K LL LS+ LR G EY Sbjct: 937 SISEAAYGALDHPVNALEDSPLMNLQEVLKCRKSTKSVDHTGLLFLSKHLRKYRYGFEYA 996 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK HLE V+ L + +++ K + + PW+ HF LS+E + Sbjct: 997 SLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQGN------------PWITHFHLSQETM 1044 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC-CRNGCQYLCSNDKIFNSVC 119 + K L + ++ L E+Y N L K N +P++ S C N C C + C Sbjct: 1045 KIKRLRLGFIVRELIEQY-NALRKQSNNTIPSVCISNSNCSVGNECVKNC-------TCC 1096 Query: 118 VNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 + VA+ V S S++ ++K E VIP +L +KG Sbjct: 1097 ITMVAQ---VESNSTSQLNIIK---ERVIPSILETLLKG 1129 >ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza brachyantha] Length = 1386 Score = 84.0 bits (206), Expect = 4e-14 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 2/219 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + PL LQE+L +G + LL LS+ LR G EY Sbjct: 831 SISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTNSVDHTGLLFLSKHLRKYRYGFEYA 890 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK HLE V+ L + +++ K K + PWV HF L++E + Sbjct: 891 SLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKGN------------PWVTHFHLNQEAM 938 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC-CRNGCQYLCSNDKIFNSVC 119 + K L + ++ L ++Y N L K N +P++ + S+C NGC + N C Sbjct: 939 KIKRLGLGYVVRELIDQY-NALRKQLNNTIPSVCILSSKCSVGNGC--------VKNQAC 989 Query: 118 VNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 V V S S++ ++K E VIP +L +KG Sbjct: 990 C--VTMVVQVESNSTSQLTIIK---ERVIPSILATLLKG 1023 >gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group] Length = 1598 Score = 79.3 bits (194), Expect = 9e-13 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 5/222 (2%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + S PL LQE+L +G + LL LS+ LR G EY Sbjct: 851 SISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYA 910 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK HLE V+ + + +++ K K + PW+ HF LS+E + Sbjct: 911 SLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGN------------PWITHFHLSQETM 958 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC----CRNGCQYLCSNDKIFN 128 + K L + ++ + ++Y NTL K N +P++ SE N L N N Sbjct: 959 KIKRLGLEFIVREIIDQY-NTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGTGN 1017 Query: 127 SVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 N S V+ + + L + E VIP +L +KG Sbjct: 1018 ECVKNQTCCVSMVVQVEINSMSQLDVIKERVIPSILATLLKG 1059 >gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii] Length = 1334 Score = 78.2 bits (191), Expect = 2e-12 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + S PL LQ++L +G + LL LS++L+ GLEY Sbjct: 839 SISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGLEYA 898 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK HLE V L + +++ K S PW+ HF LS+E + Sbjct: 899 SLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGS------------PWITHFHLSQEMM 946 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 +K L ++ ++ L E+Y +K L P + +C + C N + + C+ Sbjct: 947 TKKRLGLTLVVEELTEQYN---AKRDKLNFPKVYISKGKC---SADHECGNRQ---TCCI 997 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 V + S S+++ +K + VIP LL + VKG Sbjct: 998 TVVTQDD---SNSMSQLDTIK---KRVIPNLLALLVKG 1029 >gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group] Length = 1623 Score = 77.4 bits (189), Expect = 3e-12 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 10/227 (4%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + S PL LQE+L +G + LL LS+ LR G EY Sbjct: 872 SISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYA 931 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK HLE V+ + + +++ K K + PW+ HF L++E + Sbjct: 932 SLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGN------------PWITHFHLNQETM 979 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC---------RNGCQYLCSN 143 + K L + ++ + ++Y NTL K N +P++ SE + G N Sbjct: 980 KIKRLGLEFIVREIIDQY-NTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGTGN 1038 Query: 142 DKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 + + N C V V S+++V+K E VIP +L +KG Sbjct: 1039 ECVKNQTCC--VTMVVQVEINSMSQLDVIK---ERVIPSILATLLKG 1080 >ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium distachyon] Length = 1470 Score = 76.6 bits (187), Expect = 6e-12 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + PL LQE+L +G + LL LS++L+ G EY Sbjct: 916 SISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLFLSKNLKKYRYGFEYA 975 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L V+++LE ++ +L + +D K K S PW+ HF +SKE + Sbjct: 976 SLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKGS------------PWITHFHISKEMM 1023 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 + K L + L+ L E Y + N+ +P + +C + +D I N C Sbjct: 1024 KRKRLGLRLLVEDLTEHYNAKRDQLNNV-IPKVYISKCKCSDD-------DDCINNQTCC 1075 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 V S S+++ LK + IP LL VKG Sbjct: 1076 ITVVAQDESNSTSTSQLDDLK---KRAIPVLLATPVKG 1110 >ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2 [Solanum tuberosum] Length = 1233 Score = 75.1 bits (183), Expect = 2e-11 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 ++ E AY L++ + + S PL L++IL SG G +K + LS+ L G EYG Sbjct: 672 AISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYG 731 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 AL VK HLE + L ++ + F + K H+ PWV HF + KE + Sbjct: 732 ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 779 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 + + L++ +L+ L Y +K N LPN+ +C + K + +C+ Sbjct: 780 KTRRLKLRSILDALNMRYRAATTKGGN-DLPNLHITCKDCS------VAEARKEKSEICI 832 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 T SV+ +L +VVIP LL +KG Sbjct: 833 -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 865 >ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1 [Solanum tuberosum] Length = 1446 Score = 75.1 bits (183), Expect = 2e-11 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 ++ E AY L++ + + S PL L++IL SG G +K + LS+ L G EYG Sbjct: 885 AISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYG 944 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 AL VK HLE + L ++ + F + K H+ PWV HF + KE + Sbjct: 945 ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 992 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 + + L++ +L+ L Y +K N LPN+ +C + K + +C+ Sbjct: 993 KTRRLKLRSILDALNMRYRAATTKGGN-DLPNLHITCKDCS------VAEARKEKSEICI 1045 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 T SV+ +L +VVIP LL +KG Sbjct: 1046 -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 1078 >ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum lycopersicum] Length = 1446 Score = 74.3 bits (181), Expect = 3e-11 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 ++ E AY L++ + + S PL L++IL SG G +K + LS+ L G EYG Sbjct: 885 AISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYG 944 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 AL VK HLE + L ++ + F + K H+ PWV HF + KE + Sbjct: 945 ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 992 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 + + L++ +L+ L Y +K N LPN+ +C + K + +C+ Sbjct: 993 KTRRLKLRSVLDALNMRYRAATTKAGN-DLPNLHITCKDCS------VAEVQKEKSEICI 1045 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 T SV+ +L +VVIP LL +KG Sbjct: 1046 -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 1078 >gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum] Length = 1138 Score = 74.3 bits (181), Expect = 3e-11 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 ++ E AY L++ + + S PL L++IL SG G +K + LS+ L G EYG Sbjct: 577 AISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYG 636 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 AL VK HLE + L ++ + F + K H+ PWV HF + KE + Sbjct: 637 ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 684 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 + + L++ +L+ L Y +K N LPN+ +C + K + +C+ Sbjct: 685 KTRRLKLRSVLDALNMRYRAATTKAGN-DLPNLHITCKDCS------VAEVQKEKSEICI 737 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 T SV+ +L +VVIP LL +KG Sbjct: 738 -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 770 >gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus] Length = 1112 Score = 73.6 bits (179), Expect = 5e-11 Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSG-QGKDCCKKILLRLSRDLRNVHCGLEYG 476 ++ E AY L++ + + PL L+++L G + K L LSR L G E+G Sbjct: 567 AISEAAYSALDQPVSALEPSPLIALKKVLDCGVKNNTGGKSASLFLSRRLGKWVNGFEFG 626 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 AL VK H+E++ ++ + F ++ + + PWV +F ++KE Sbjct: 627 ALEVKDHMESLLFSEVVSEVTISFSTE--------------RRTNISPWVCNFCINKEVF 672 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 ++ L++ +++ L+ N K LKLPN+L +C + + + +I SV V Sbjct: 673 MKRNLKLESVVHTLRAN-CNATPKKMKLKLPNLLIENKDC--SEADFHEDSSRICISVAV 729 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 + E S++ E E+L +VIP LLR VKG Sbjct: 730 S-QNELSNLHFGSLKEYEILDYLRNMVIPVLLRTVVKG 766 >ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi|297332282|gb|EFH62700.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] Length = 1456 Score = 71.6 bits (174), Expect = 2e-10 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 3/220 (1%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 +L E AY L++ + + PL L+ +L G K ++ + L LS L G EYG Sbjct: 885 ALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMTLYLSETLSKKKHGFEYG 944 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L +K+HLE + ++ ++F K+ P+ PWV HF +S++ L Sbjct: 945 SLEIKNHLEKLSFSEIVSTSMIIFSPSTNTKV------------PLSPWVCHFHISEKVL 992 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIF--NSV 122 + K L + +++ L E+Y S+ R LKL + + + S+DK +S Sbjct: 993 KRKQLNVESVVSSLNEQYK---SRNRELKLDIV-----DLDIQSTNHCSSDDKAMKDDSF 1044 Query: 121 CVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 C+ T +V+ V L V+IP LL VKG Sbjct: 1045 CI-----TVTVIEASKHSVLELDAIRLVLIPFLLDSPVKG 1079 >ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria vesca subsp. vesca] Length = 1438 Score = 71.2 bits (173), Expect = 2e-10 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 ++ E AY L++ + + PL L+ IL G + K+ + L LS L G EYG Sbjct: 893 AISEAAYSALDQPVSLLEASPLLNLKNILECGSKRSSAKQTMSLFLSDKLDRHRHGFEYG 952 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 AL VK+HLE + + ++F SQ K++ S PWV HF +SKE + Sbjct: 953 ALEVKNHLEGLNFSDIVSTVMIMFSSQSGSKMRFS------------PWVSHFHISKEIV 1000 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 R + L + ++ L YA S +LK I+ +G EC C CS ++ C+ Sbjct: 1001 RRRRLNVQSIIEAL---YAMCNSAGADLK---IMIIGREC---DC---CSTPN--DTFCI 1046 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 + ++ + N+ + L +VIP LL+ VKG Sbjct: 1047 SV-----TLTEKYNNSSKELDKTRVLVIPFLLKTVVKG 1079 >ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5 [Setaria italica] Length = 1181 Score = 70.9 bits (172), Expect = 3e-10 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + PL LQE+ + + + LL LS+ L+ LEY Sbjct: 633 SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 692 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK+HLE V L E +++D K + PW HF +SKE + Sbjct: 693 SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 739 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134 ++K L + ++ L +EY T ++ N +P++ +G +C +N Sbjct: 740 KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 787 Query: 133 FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 ++ C+ VA+ S S+++ +K + VIP +L +KG Sbjct: 788 -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 824 >ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3 [Setaria italica] Length = 1362 Score = 70.9 bits (172), Expect = 3e-10 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + PL LQE+ + + + LL LS+ L+ LEY Sbjct: 814 SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 873 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK+HLE V L E +++D K + PW HF +SKE + Sbjct: 874 SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 920 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134 ++K L + ++ L +EY T ++ N +P++ +G +C +N Sbjct: 921 KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 968 Query: 133 FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 ++ C+ VA+ S S+++ +K + VIP +L +KG Sbjct: 969 -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 1005 >ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2 [Setaria italica] Length = 1450 Score = 70.9 bits (172), Expect = 3e-10 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + PL LQE+ + + + LL LS+ L+ LEY Sbjct: 902 SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 961 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK+HLE V L E +++D K + PW HF +SKE + Sbjct: 962 SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 1008 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134 ++K L + ++ L +EY T ++ N +P++ +G +C +N Sbjct: 1009 KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 1056 Query: 133 FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 ++ C+ VA+ S S+++ +K + VIP +L +KG Sbjct: 1057 -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 1093 >ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1 [Setaria italica] gi|514785102|ref|XP_004970757.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X4 [Setaria italica] Length = 1451 Score = 70.9 bits (172), Expect = 3e-10 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG L+ + PL LQE+ + + + LL LS+ L+ LEY Sbjct: 903 SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 962 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK+HLE V L E +++D K + PW HF +SKE + Sbjct: 963 SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 1009 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134 ++K L + ++ L +EY T ++ N +P++ +G +C +N Sbjct: 1010 KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 1057 Query: 133 FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 ++ C+ VA+ S S+++ +K + VIP +L +KG Sbjct: 1058 -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 1094 >gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea mays] Length = 1444 Score = 70.9 bits (172), Expect = 3e-10 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG LE + PL LQE+ + + I LL LSR L+ GLEY Sbjct: 896 SISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYA 955 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK+HLE V L E +++D + KI++ W HF ++K + Sbjct: 956 SLEVKNHLERVNFSDLVETIMIIYDG--HDKIRNEG-----------MWTTHFHINKAMM 1002 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 ++K L + +++ L +EY T + N +P+I +C L ++ + +S C Sbjct: 1003 KKKRLGLRFVVDELAKEYDTTRDQLNN-AIPSIRISRRKC-------LVGDEGVKSSSCC 1054 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 +A + S+++ +K VIP +L +KG Sbjct: 1055 --IAVVAHAERNSISQLDTIK---TRVIPSILDTLLKG 1087 >ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays] gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent RNA polymerase D largest subunit family protein [Zea mays] gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent RNA polymerase D largest subunit family protein [Zea mays] Length = 1444 Score = 70.9 bits (172), Expect = 3e-10 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 1/218 (0%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476 S+ E AYG LE + PL LQE+ + + I LL LSR L+ GLEY Sbjct: 896 SISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYA 955 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L VK+HLE V L E +++D + KI++ W HF ++K + Sbjct: 956 SLEVKNHLERVNFSDLVETIMIIYDG--HDKIRNEG-----------MWTTHFHINKAMM 1002 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116 ++K L + +++ L +EY T + N +P+I +C L ++ + +S C Sbjct: 1003 KKKRLGLRFVVDELAKEYDTTRDQLNN-AIPSIRISRRKC-------LVGDEGVKSSSCC 1054 Query: 115 NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 +A + S+++ +K VIP +L +KG Sbjct: 1055 --IAVVAHAERNSISQLDTIK---TRVIPSILDTLLKG 1087 >ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum] gi|557088296|gb|ESQ29076.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum] Length = 1465 Score = 70.5 bits (171), Expect = 4e-10 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%) Frame = -2 Query: 652 SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476 +L E AY L++ + + PL L+ +L G K ++ + L LS L G EYG Sbjct: 892 ALTEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSETLSKKKHGFEYG 951 Query: 475 ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296 +L +K+HLE + ++ ++F + FT P+ PWV+HF +SK+ + Sbjct: 952 SLDIKNHLEKLSFSEIVSTSMIIFSPR------------KFTRIPLSPWVLHFHISKKAM 999 Query: 295 REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNS--V 122 ++K L +++ L ++Y + ++ + L L ++ + N C + +DK + Sbjct: 1000 KQKQLNAESVVSSLNKQYTSRKNELK-LDLTDLQIQST----NHCSW---DDKAMDDDRF 1051 Query: 121 CVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2 C+ +S S + E++ ++L V+IP LL VKG Sbjct: 1052 CITVTVVEASHFS--SLELDAIRL---VLIPFLLDSPVKG 1086