BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00026585
         (653 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...    84   3e-14
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su...    84   4e-14
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi...    79   9e-13
gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg...    78   2e-12
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo...    77   3e-12
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub...    77   6e-12
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su...    75   2e-11
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...    75   2e-11
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub...    74   3e-11
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...    74   3e-11
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...    74   5e-11
ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi...    72   2e-10
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub...    71   2e-10
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub...    71   3e-10
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub...    71   3e-10
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub...    71   3e-10
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub...    71   3e-10
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...    71   3e-10
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...    71   3e-10
ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutr...    70   4e-10

>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1492

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 2/219 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQG-KDCCKKILLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  + +    PL  LQE+L   +  K      LL LS+ LR    G EY 
Sbjct: 937  SISEAAYGALDHPVNALEDSPLMNLQEVLKCRKSTKSVDHTGLLFLSKHLRKYRYGFEYA 996

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK HLE V+   L +   +++      K + +            PW+ HF LS+E +
Sbjct: 997  SLQVKDHLERVDFSDLVDAVMILYGGSDMQKTQGN------------PWITHFHLSQETM 1044

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC-CRNGCQYLCSNDKIFNSVC 119
            + K L +  ++  L E+Y N L K  N  +P++    S C   N C   C       + C
Sbjct: 1045 KIKRLRLGFIVRELIEQY-NALRKQSNNTIPSVCISNSNCSVGNECVKNC-------TCC 1096

Query: 118  VNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
            +  VA+   V S   S++ ++K   E VIP +L   +KG
Sbjct: 1097 ITMVAQ---VESNSTSQLNIIK---ERVIPSILETLLKG 1129


>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1386

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 2/219 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  +      PL  LQE+L   +G +      LL LS+ LR    G EY 
Sbjct: 831  SISEAAYGALDHPVNGLEDSPLMNLQEVLKCHKGTNSVDHTGLLFLSKHLRKYRYGFEYA 890

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK HLE V+   L +   +++      K K +            PWV HF L++E +
Sbjct: 891  SLEVKDHLERVDFSDLVDTVMILYGGSDIQKSKGN------------PWVTHFHLNQEAM 938

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC-CRNGCQYLCSNDKIFNSVC 119
            + K L +  ++  L ++Y N L K  N  +P++  + S+C   NGC        + N  C
Sbjct: 939  KIKRLGLGYVVRELIDQY-NALRKQLNNTIPSVCILSSKCSVGNGC--------VKNQAC 989

Query: 118  VNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
               V     V S   S++ ++K   E VIP +L   +KG
Sbjct: 990  C--VTMVVQVESNSTSQLTIIK---ERVIPSILATLLKG 1023


>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
          Length = 1598

 Score = 79.3 bits (194), Expect = 9e-13
 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 5/222 (2%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  + S    PL  LQE+L   +G +      LL LS+ LR    G EY 
Sbjct: 851  SISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYA 910

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK HLE V+   + +   +++      K K +            PW+ HF LS+E +
Sbjct: 911  SLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGN------------PWITHFHLSQETM 958

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSEC----CRNGCQYLCSNDKIFN 128
            + K L +  ++  + ++Y NTL K  N  +P++    SE       N    L  N    N
Sbjct: 959  KIKRLGLEFIVREIIDQY-NTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGTGN 1017

Query: 127  SVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
                N     S V+    + +  L +  E VIP +L   +KG
Sbjct: 1018 ECVKNQTCCVSMVVQVEINSMSQLDVIKERVIPSILATLLKG 1059


>gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
          Length = 1334

 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  + S    PL  LQ++L   +G      + LL LS++L+    GLEY 
Sbjct: 839  SISEAAYGALDHPVNSLEESPLMNLQDVLKCQKGGTSMDHVGLLFLSKNLKKYRYGLEYA 898

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK HLE V    L +   +++        K S            PW+ HF LS+E +
Sbjct: 899  SLEVKDHLEPVNFSDLVDTVMILYGGCGIESTKGS------------PWITHFHLSQEMM 946

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
             +K L ++ ++  L E+Y    +K   L  P +     +C      + C N +   + C+
Sbjct: 947  TKKRLGLTLVVEELTEQYN---AKRDKLNFPKVYISKGKC---SADHECGNRQ---TCCI 997

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
              V +     S   S+++ +K   + VIP LL + VKG
Sbjct: 998  TVVTQDD---SNSMSQLDTIK---KRVIPNLLALLVKG 1029


>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
          Length = 1623

 Score = 77.4 bits (189), Expect = 3e-12
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 10/227 (4%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  + S    PL  LQE+L   +G +      LL LS+ LR    G EY 
Sbjct: 872  SISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLLFLSKHLRKYRYGFEYA 931

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK HLE V+   + +   +++      K K +            PW+ HF L++E +
Sbjct: 932  SLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGN------------PWITHFHLNQETM 979

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECC---------RNGCQYLCSN 143
            + K L +  ++  + ++Y NTL K  N  +P++    SE           + G      N
Sbjct: 980  KIKRLGLEFIVREIIDQY-NTLRKQLNNAIPSVSISNSETLHLKMENKSGKLGKNLGTGN 1038

Query: 142  DKIFNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
            + + N  C   V     V     S+++V+K   E VIP +L   +KG
Sbjct: 1039 ECVKNQTCC--VTMVVQVEINSMSQLDVIK---ERVIPSILATLLKG 1080


>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
            distachyon]
          Length = 1470

 Score = 76.6 bits (187), Expect = 6e-12
 Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  +      PL  LQE+L   +G +      LL LS++L+    G EY 
Sbjct: 916  SISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNSLDHFGLLFLSKNLKKYRYGFEYA 975

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L V+++LE ++  +L     + +D     K K S            PW+ HF +SKE +
Sbjct: 976  SLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKGS------------PWITHFHISKEMM 1023

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            + K L +  L+  L E Y     +  N+ +P +     +C  +       +D I N  C 
Sbjct: 1024 KRKRLGLRLLVEDLTEHYNAKRDQLNNV-IPKVYISKCKCSDD-------DDCINNQTCC 1075

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
              V       S   S+++ LK   +  IP LL   VKG
Sbjct: 1076 ITVVAQDESNSTSTSQLDDLK---KRAIPVLLATPVKG 1110


>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Solanum tuberosum]
          Length = 1233

 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            ++ E AY  L++ + +  S PL  L++IL SG G    +K   + LS+ L     G EYG
Sbjct: 672  AISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYG 731

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            AL VK HLE + L ++     + F  +   K  H+            PWV HF + KE +
Sbjct: 732  ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 779

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            + + L++  +L+ L   Y    +K  N  LPN+     +C       +    K  + +C+
Sbjct: 780  KTRRLKLRSILDALNMRYRAATTKGGN-DLPNLHITCKDCS------VAEARKEKSEICI 832

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
                 T SV+        +L    +VVIP LL   +KG
Sbjct: 833  -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 865


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            ++ E AY  L++ + +  S PL  L++IL SG G    +K   + LS+ L     G EYG
Sbjct: 885  AISEAAYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYG 944

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            AL VK HLE + L ++     + F  +   K  H+            PWV HF + KE +
Sbjct: 945  ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 992

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            + + L++  +L+ L   Y    +K  N  LPN+     +C       +    K  + +C+
Sbjct: 993  KTRRLKLRSILDALNMRYRAATTKGGN-DLPNLHITCKDCS------VAEARKEKSEICI 1045

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
                 T SV+        +L    +VVIP LL   +KG
Sbjct: 1046 -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 1078


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
            lycopersicum]
          Length = 1446

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            ++ E AY  L++ + +  S PL  L++IL SG G    +K   + LS+ L     G EYG
Sbjct: 885  AISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYG 944

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            AL VK HLE + L ++     + F  +   K  H+            PWV HF + KE +
Sbjct: 945  ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 992

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            + + L++  +L+ L   Y    +K  N  LPN+     +C       +    K  + +C+
Sbjct: 993  KTRRLKLRSVLDALNMRYRAATTKAGN-DLPNLHITCKDCS------VAEVQKEKSEICI 1045

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
                 T SV+        +L    +VVIP LL   +KG
Sbjct: 1046 -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 1078


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            ++ E AY  L++ + +  S PL  L++IL SG G    +K   + LS+ L     G EYG
Sbjct: 577  AISEAAYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYG 636

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            AL VK HLE + L ++     + F  +   K  H+            PWV HF + KE +
Sbjct: 637  ALEVKGHLERLLLSEVVSTVMICFSPET-RKSTHN-----------CPWVCHFHIDKENV 684

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            + + L++  +L+ L   Y    +K  N  LPN+     +C       +    K  + +C+
Sbjct: 685  KTRRLKLRSVLDALNMRYRAATTKAGN-DLPNLHITCKDCS------VAEVQKEKSEICI 737

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
                 T SV+        +L    +VVIP LL   +KG
Sbjct: 738  -----TVSVVETSKDPSSLLDTLRDVVIPFLLETVIKG 770


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score = 73.6 bits (179), Expect = 5e-11
 Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSG-QGKDCCKKILLRLSRDLRNVHCGLEYG 476
            ++ E AY  L++ + +    PL  L+++L  G +     K   L LSR L     G E+G
Sbjct: 567  AISEAAYSALDQPVSALEPSPLIALKKVLDCGVKNNTGGKSASLFLSRRLGKWVNGFEFG 626

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            AL VK H+E++   ++     + F ++                + + PWV +F ++KE  
Sbjct: 627  ALEVKDHMESLLFSEVVSEVTISFSTE--------------RRTNISPWVCNFCINKEVF 672

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
             ++ L++  +++ L+    N   K   LKLPN+L    +C  +   +   + +I  SV V
Sbjct: 673  MKRNLKLESVVHTLRAN-CNATPKKMKLKLPNLLIENKDC--SEADFHEDSSRICISVAV 729

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
            +   E S++      E E+L     +VIP LLR  VKG
Sbjct: 730  S-QNELSNLHFGSLKEYEILDYLRNMVIPVLLRTVVKG 766


>ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata] gi|297332282|gb|EFH62700.1|
            NRPD1a [Arabidopsis lyrata subsp. lyrata]
          Length = 1456

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 3/220 (1%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            +L E AY  L++ +    + PL  L+ +L  G  K   ++ + L LS  L     G EYG
Sbjct: 885  ALSEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMTLYLSETLSKKKHGFEYG 944

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L +K+HLE +   ++     ++F      K+            P+ PWV HF +S++ L
Sbjct: 945  SLEIKNHLEKLSFSEIVSTSMIIFSPSTNTKV------------PLSPWVCHFHISEKVL 992

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIF--NSV 122
            + K L +  +++ L E+Y    S+ R LKL  +     +       +  S+DK    +S 
Sbjct: 993  KRKQLNVESVVSSLNEQYK---SRNRELKLDIV-----DLDIQSTNHCSSDDKAMKDDSF 1044

Query: 121  CVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
            C+     T +V+      V  L     V+IP LL   VKG
Sbjct: 1045 CI-----TVTVIEASKHSVLELDAIRLVLIPFLLDSPVKG 1079


>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1438

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            ++ E AY  L++ +    + PL  L+ IL  G  +   K+ + L LS  L     G EYG
Sbjct: 893  AISEAAYSALDQPVSLLEASPLLNLKNILECGSKRSSAKQTMSLFLSDKLDRHRHGFEYG 952

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            AL VK+HLE +    +     ++F SQ   K++ S            PWV HF +SKE +
Sbjct: 953  ALEVKNHLEGLNFSDIVSTVMIMFSSQSGSKMRFS------------PWVSHFHISKEIV 1000

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            R + L +  ++  L   YA   S   +LK   I+ +G EC    C   CS     ++ C+
Sbjct: 1001 RRRRLNVQSIIEAL---YAMCNSAGADLK---IMIIGREC---DC---CSTPN--DTFCI 1046

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
            +      ++  + N+  + L     +VIP LL+  VKG
Sbjct: 1047 SV-----TLTEKYNNSSKELDKTRVLVIPFLLKTVVKG 1079


>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Setaria italica]
          Length = 1181

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+ L+     LEY 
Sbjct: 633  SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 692

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK+HLE V    L E   +++D     K +              PW  HF +SKE +
Sbjct: 693  SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 739

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134
            ++K L +  ++  L +EY  T ++  N  +P++        +G +C +N           
Sbjct: 740  KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 787

Query: 133  FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
             ++ C+  VA+     S   S+++ +K   + VIP +L   +KG
Sbjct: 788  -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 824


>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
            [Setaria italica]
          Length = 1362

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+ L+     LEY 
Sbjct: 814  SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 873

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK+HLE V    L E   +++D     K +              PW  HF +SKE +
Sbjct: 874  SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 920

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134
            ++K L +  ++  L +EY  T ++  N  +P++        +G +C +N           
Sbjct: 921  KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 968

Query: 133  FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
             ++ C+  VA+     S   S+++ +K   + VIP +L   +KG
Sbjct: 969  -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 1005


>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
            [Setaria italica]
          Length = 1450

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+ L+     LEY 
Sbjct: 902  SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 961

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK+HLE V    L E   +++D     K +              PW  HF +SKE +
Sbjct: 962  SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 1008

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134
            ++K L +  ++  L +EY  T ++  N  +P++        +G +C +N           
Sbjct: 1009 KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 1056

Query: 133  FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
             ++ C+  VA+     S   S+++ +K   + VIP +L   +KG
Sbjct: 1057 -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 1093


>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Setaria italica] gi|514785102|ref|XP_004970757.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X4 [Setaria italica]
          Length = 1451

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG L+  +      PL  LQE+    +  +    + LL LS+ L+     LEY 
Sbjct: 903  SISEAAYGALDHPVNGLEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYA 962

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK+HLE V    L E   +++D     K +              PW  HF +SKE +
Sbjct: 963  SLEVKNHLERVNFSDLVETIMIIYDG--CDKTRKGG-----------PWTTHFHISKEMM 1009

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNI------LFMGSECCRNGCQYLCSNDKI 134
            ++K L +  ++  L +EY  T ++  N  +P++        +G +C +N           
Sbjct: 1010 KKKRLGLGFVVEELTKEYDATRNQLNN-AIPSVHISKRKCSVGDQCVQN----------- 1057

Query: 133  FNSVCVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
             ++ C+  VA+     S   S+++ +K   + VIP +L   +KG
Sbjct: 1058 -SACCITLVAQAE---SNSMSQLDTIK---KRVIPSILDTLLKG 1094


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG LE  +      PL  LQE+    +  +    I LL LSR L+    GLEY 
Sbjct: 896  SISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYA 955

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK+HLE V    L E   +++D   + KI++              W  HF ++K  +
Sbjct: 956  SLEVKNHLERVNFSDLVETIMIIYDG--HDKIRNEG-----------MWTTHFHINKAMM 1002

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            ++K L +  +++ L +EY  T  +  N  +P+I     +C       L  ++ + +S C 
Sbjct: 1003 KKKRLGLRFVVDELAKEYDTTRDQLNN-AIPSIRISRRKC-------LVGDEGVKSSSCC 1054

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
              +A  +       S+++ +K     VIP +L   +KG
Sbjct: 1055 --IAVVAHAERNSISQLDTIK---TRVIPSILDTLLKG 1087


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
            gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
            D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
            TPA: putative DNA dependent RNA polymerase D largest
            subunit family protein [Zea mays]
            gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
            RNA polymerase D largest subunit family protein [Zea
            mays]
          Length = 1444

 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 1/218 (0%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKI-LLRLSRDLRNVHCGLEYG 476
            S+ E AYG LE  +      PL  LQE+    +  +    I LL LSR L+    GLEY 
Sbjct: 896  SISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYA 955

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L VK+HLE V    L E   +++D   + KI++              W  HF ++K  +
Sbjct: 956  SLEVKNHLERVNFSDLVETIMIIYDG--HDKIRNEG-----------MWTTHFHINKAMM 1002

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNSVCV 116
            ++K L +  +++ L +EY  T  +  N  +P+I     +C       L  ++ + +S C 
Sbjct: 1003 KKKRLGLRFVVDELAKEYDTTRDQLNN-AIPSIRISRRKC-------LVGDEGVKSSSCC 1054

Query: 115  NFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
              +A  +       S+++ +K     VIP +L   +KG
Sbjct: 1055 --IAVVAHAERNSISQLDTIK---TRVIPSILDTLLKG 1087


>ref|XP_006391790.1| hypothetical protein EUTSA_v10023214mg [Eutrema salsugineum]
            gi|557088296|gb|ESQ29076.1| hypothetical protein
            EUTSA_v10023214mg [Eutrema salsugineum]
          Length = 1465

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%)
 Frame = -2

Query: 652  SLGEMAYGILEKQLPSGHSHPLQILQEILGSGQGKDCCKKIL-LRLSRDLRNVHCGLEYG 476
            +L E AY  L++ +    + PL  L+ +L  G  K   ++ + L LS  L     G EYG
Sbjct: 892  ALTEAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSETLSKKKHGFEYG 951

Query: 475  ALLVKHHLETVELLQLTERYGVVFDSQIYHKIKHSKEALSFTSSPVLPWVIHFSLSKEKL 296
            +L +K+HLE +   ++     ++F  +             FT  P+ PWV+HF +SK+ +
Sbjct: 952  SLDIKNHLEKLSFSEIVSTSMIIFSPR------------KFTRIPLSPWVLHFHISKKAM 999

Query: 295  REKGLEISKLLNILKEEYANTLSKFRNLKLPNILFMGSECCRNGCQYLCSNDKIFNS--V 122
            ++K L    +++ L ++Y +  ++ + L L ++    +    N C +   +DK  +    
Sbjct: 1000 KQKQLNAESVVSSLNKQYTSRKNELK-LDLTDLQIQST----NHCSW---DDKAMDDDRF 1051

Query: 121  CVNFVAETSSVLSQGNSEVEVLKLFSEVVIPKLLRIHVKG 2
            C+      +S  S  + E++ ++L   V+IP LL   VKG
Sbjct: 1052 CITVTVVEASHFS--SLELDAIRL---VLIPFLLDSPVKG 1086