BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00025951
         (560 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE76199.1| unknown [Picea sitchensis]                             213   3e-53
gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma ...   206   3e-51
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...   204   1e-50
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...   203   2e-50
ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...   201   1e-49
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...   201   1e-49
ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like...   200   2e-49
ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutr...   199   3e-49
ref|XP_002877851.1| pseudouridine synthase family protein [Arabi...   199   3e-49
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]           199   5e-49
ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Caps...   199   5e-49
dbj|BAJ90823.1| predicted protein [Hordeum vulgare subsp. vulgar...   199   5e-49
gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus...   198   7e-49
ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...   197   1e-48
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              197   1e-48
ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [...   197   1e-48
ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Popu...   196   4e-48
ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [...   194   9e-48
ref|XP_004984840.1| PREDICTED: RNA pseudouridine synthase 5-like...   194   1e-47
ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thalian...   194   2e-47

>gb|ADE76199.1| unknown [Picea sitchensis]
          Length = 386

 Score =  213 bits (542), Expect = 3e-53
 Identities = 101/166 (60%), Positives = 127/166 (76%), Gaps = 1/166 (0%)
 Frame = +3

Query: 63  VEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVD 242
           +EFG+PWPE+N+GL Y D VK  S+S+  TL+DFYS+ Y+SSAPR+GWLQRI NGQI+VD
Sbjct: 1   MEFGIPWPEFNDGLSYTDTVK--STSTPPTLIDFYSSRYESSAPRKGWLQRIHNGQITVD 58

Query: 243 GMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQ 422
           G  V   DT+L  G  LVYHR+ W+EP AP K+ +L+ED+HLL +NKP+GLQVLPGGLFQ
Sbjct: 59  GKTVNEPDTVLRIGPKLVYHRLSWREPIAPCKLYVLFEDDHLLAVNKPSGLQVLPGGLFQ 118

Query: 423 QRTVLAQLQWKYTQSTNANMITDK-IKHHSIACPTPVHRLGRGTSG 557
           QRTVL QL+WK +QS+    +  K +     + P PVHRLGRGTSG
Sbjct: 119 QRTVLTQLKWKASQSSKYRSVAGKAVADFQESQPVPVHRLGRGTSG 164


>gb|EOY18594.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 378

 Score =  206 bits (524), Expect = 3e-51
 Identities = 99/174 (56%), Positives = 130/174 (74%)
 Frame = +3

Query: 36  MPSPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQR 215
           M + S    + FG+PWPE N+GL Y D++KPS S   +TL++FYS+ YK+SAP +GWLQR
Sbjct: 1   MSNDSQTQSLVFGLPWPELNDGLFYDDVIKPSDSE--LTLIEFYSSKYKNSAPSQGWLQR 58

Query: 216 IRNGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGL 395
           I+NGQISVDG VV++ +TIL   S LVYHR+PWKEP AP+ + +LYED+ ++ +NKP+GL
Sbjct: 59  IQNGQISVDGRVVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPSGL 118

Query: 396 QVLPGGLFQQRTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           QVLPGGLFQQRTVL QL W+  + T++  +  +  H     P PVHRLGRGTSG
Sbjct: 119 QVLPGGLFQQRTVLTQLSWRMRKQTSS--LASQESH-----PVPVHRLGRGTSG 165


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
           vesca]
          Length = 375

 Score =  204 bits (519), Expect = 1e-50
 Identities = 103/176 (58%), Positives = 128/176 (72%), Gaps = 4/176 (2%)
 Frame = +3

Query: 42  SPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIR 221
           S S ++   FG+PWP+ N+GL Y D+VK  SS S +TL++FYS+ YKSSAP +GWLQRIR
Sbjct: 4   STSSLSTQTFGLPWPDLNDGLSYNDVVK--SSDSELTLIEFYSSKYKSSAPLQGWLQRIR 61

Query: 222 NGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQV 401
           NGQI+VDG VV+++DTIL  GS LVYHR+PW EP APY + +LYED+ ++ +NKP GLQV
Sbjct: 62  NGQITVDGEVVRDSDTILRVGSELVYHRLPWGEPDAPYLLEVLYEDDDMIALNKPGGLQV 121

Query: 402 LPGGLFQQRTVLAQLQWKYTQSTNANMITDKIKHHSIACP----TPVHRLGRGTSG 557
           LPGGLFQQRTVL QL W+ +Q           K   +AC      PVHRLGRGTSG
Sbjct: 122 LPGGLFQQRTVLTQLLWRESQ-----------KFDHLACQKSHLVPVHRLGRGTSG 166


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
           gi|358349060|ref|XP_003638558.1| RNA pseudourine
           synthase [Medicago truncatula]
           gi|355481000|gb|AES62203.1| RNA pseudourine synthase
           [Medicago truncatula] gi|355504493|gb|AES85696.1| RNA
           pseudourine synthase [Medicago truncatula]
          Length = 371

 Score =  203 bits (517), Expect = 2e-50
 Identities = 97/169 (57%), Positives = 127/169 (75%)
 Frame = +3

Query: 51  VVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQ 230
           + +P + G+PWPE+N+GL Y D+V+PS +   +TL++FYS  YKSSAP +GWLQRI++ Q
Sbjct: 1   MASPKKIGIPWPEFNDGLSYDDVVRPSDAG--LTLIEFYSTKYKSSAPLQGWLQRIKSDQ 58

Query: 231 ISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPG 410
           I++D  VV + +TIL  GS LVYHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPG
Sbjct: 59  ITLDARVVTDPNTILRVGSKLVYHRIPWKEPDAPHTIEVLYEDDDIIALNKPSGLQVLPG 118

Query: 411 GLFQQRTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           GLFQQRTVL QLQW   ++ N + I    K H    P PVHRLGRGTSG
Sbjct: 119 GLFQQRTVLTQLQW---ETNNKSTIEAHQKPH----PVPVHRLGRGTSG 160


>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
           sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED:
           RNA pseudouridine synthase 5-like isoform X3 [Citrus
           sinensis]
          Length = 389

 Score =  201 bits (510), Expect = 1e-49
 Identities = 97/163 (59%), Positives = 122/163 (74%)
 Frame = +3

Query: 69  FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           FG PWP+ NEGL Y D+V PS S   +TL++FYS  +K+SAP +GWLQRI+NGQI+VDG 
Sbjct: 13  FGEPWPQLNEGLLYNDVVSPSDSK--LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGR 70

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VV + + ILS GS LVYHR+PWKEP  PY + + YED+ L+ +NKP+GLQVLPGGLFQQR
Sbjct: 71  VVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 130

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           TVL QLQW+   S  ++ ++ +  H     P PVHRLGRGTSG
Sbjct: 131 TVLKQLQWR--ASKQSSSLSSQASH-----PVPVHRLGRGTSG 166


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
           sinensis]
          Length = 390

 Score =  201 bits (510), Expect = 1e-49
 Identities = 97/163 (59%), Positives = 122/163 (74%)
 Frame = +3

Query: 69  FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           FG PWP+ NEGL Y D+V PS S   +TL++FYS  +K+SAP +GWLQRI+NGQI+VDG 
Sbjct: 13  FGEPWPQLNEGLLYNDVVSPSDSK--LTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDGR 70

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VV + + ILS GS LVYHR+PWKEP  PY + + YED+ L+ +NKP+GLQVLPGGLFQQR
Sbjct: 71  VVNDPNIILSAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQR 130

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           TVL QLQW+   S  ++ ++ +  H     P PVHRLGRGTSG
Sbjct: 131 TVLKQLQWR--ASKQSSSLSSQASH-----PVPVHRLGRGTSG 166


>ref|XP_003556222.1| PREDICTED: RNA pseudouridine synthase 5-like [Glycine max]
          Length = 371

 Score =  200 bits (509), Expect = 2e-49
 Identities = 93/164 (56%), Positives = 122/164 (74%)
 Frame = +3

Query: 66  EFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDG 245
           +FG+PWPE N+GL Y D+V+ S + +  TL++FYS  YKSSAP +GWLQRI++GQI+VDG
Sbjct: 6   KFGIPWPECNDGLSYDDVVRASDAGA--TLIEFYSTKYKSSAPLQGWLQRIKSGQITVDG 63

Query: 246 MVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQ 425
            VV +++T+L  GS L+YHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPGGL+QQ
Sbjct: 64  GVVTDSNTVLRVGSKLIYHRLPWKEPDAPHMIDVLYEDDDMIALNKPSGLQVLPGGLYQQ 123

Query: 426 RTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           RT+L QLQW+        M       H    P PVHRLGRGTSG
Sbjct: 124 RTILTQLQWEANNQGTCEM-------HKRLHPVPVHRLGRGTSG 160


>ref|XP_006403820.1| hypothetical protein EUTSA_v10010446mg [Eutrema salsugineum]
           gi|557104939|gb|ESQ45273.1| hypothetical protein
           EUTSA_v10010446mg [Eutrema salsugineum]
          Length = 382

 Score =  199 bits (507), Expect = 3e-49
 Identities = 98/163 (60%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
 Frame = +3

Query: 72  GVPWPEYNEGLDYKDIVKP-SSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           G+PWPE N+GL YKD+V   SSSS   T+ DFYS  YKSSAP  GW+QRI+NGQI +DG 
Sbjct: 12  GLPWPELNDGLAYKDVVSSFSSSSELTTVSDFYSTKYKSSAPLLGWIQRIQNGQIQIDGE 71

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VVK+ +T+L  GS LVYHR+PWKEP  PY + +LYED  L+ +NKP+GLQVLPGGLFQQR
Sbjct: 72  VVKDHNTLLRRGSKLVYHRLPWKEPDTPYSLEVLYEDNDLIALNKPSGLQVLPGGLFQQR 131

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           T+L QLQW +++  ++   T   + H    P PVHRLGRGTSG
Sbjct: 132 TLLTQLQWCFSKKDSS---TGARESH----PVPVHRLGRGTSG 167


>ref|XP_002877851.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297323689|gb|EFH54110.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 387

 Score =  199 bits (507), Expect = 3e-49
 Identities = 101/175 (57%), Positives = 122/175 (69%)
 Frame = +3

Query: 33  SMPSPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQ 212
           S PSP    P   G+PWPE N GL YKD++  SS S   T+ DFY   YKSSAP  GW+Q
Sbjct: 2   STPSPP---PQRIGLPWPELNVGLAYKDVIS-SSDSELTTVSDFYFTKYKSSAPLLGWIQ 57

Query: 213 RIRNGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAG 392
           RI+NGQI +DG VVK+ +T+L  GS LVYHR+PWKEP  PY + +LYED+ L+ +NKP+G
Sbjct: 58  RIQNGQIQIDGEVVKDPNTLLRSGSKLVYHRLPWKEPDTPYSLQVLYEDDDLIALNKPSG 117

Query: 393 LQVLPGGLFQQRTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           LQVLPGGLFQQRTVL QLQW + +  N +    +   H    P PVHRLGRGTSG
Sbjct: 118 LQVLPGGLFQQRTVLTQLQWCFRK--NDSYTGSRESPH----PVPVHRLGRGTSG 166


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score =  199 bits (505), Expect = 5e-49
 Identities = 100/169 (59%), Positives = 123/169 (72%), Gaps = 4/169 (2%)
 Frame = +3

Query: 63  VEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVD 242
           + FG  WPE N+GL Y D+V+ S S S  TL+ FYS  YK+SAP +GWLQRIRNGQI+V+
Sbjct: 12  LRFGFSWPELNDGLFYSDVVRTSDSES--TLIQFYSRKYKNSAPLQGWLQRIRNGQITVN 69

Query: 243 GMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQ 422
           G VV++ DTILS GS LVYHR+PWKEP APY + ILYED  ++ ++KP+ LQVLPGGLFQ
Sbjct: 70  GRVVRDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPSELQVLPGGLFQ 129

Query: 423 QRTVLAQLQWKYTQSTNANMITDKIKHHSIAC----PTPVHRLGRGTSG 557
           QRTVL QLQW+ T+ ++           S+ C    P PVHRLGRGTSG
Sbjct: 130 QRTVLTQLQWRATKQSS-----------SLVCCEPNPVPVHRLGRGTSG 167


>ref|XP_006291291.1| hypothetical protein CARUB_v10017427mg [Capsella rubella]
           gi|482559998|gb|EOA24189.1| hypothetical protein
           CARUB_v10017427mg [Capsella rubella]
          Length = 382

 Score =  199 bits (505), Expect = 5e-49
 Identities = 97/162 (59%), Positives = 119/162 (73%)
 Frame = +3

Query: 72  GVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGMV 251
           G+PWPE+N+GL+YKD+V  SS S   T+ DFY   YKSSAP  GW+QRI+NGQI +DG V
Sbjct: 12  GLPWPEHNDGLEYKDVVS-SSESELTTVSDFYFTKYKSSAPLLGWIQRIQNGQIQIDGEV 70

Query: 252 VKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQRT 431
           VK+  T+L  GS LVYHR+PWKEP  PY + ILYED+ L+ +NKP+GLQVLPGGLFQQRT
Sbjct: 71  VKDPKTVLRSGSKLVYHRLPWKEPDTPYSLEILYEDDDLIALNKPSGLQVLPGGLFQQRT 130

Query: 432 VLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           +L QLQW + +    +  T   + H    P PVHRLGRGTSG
Sbjct: 131 LLTQLQWWFGKK---DFSTGSPESH----PVPVHRLGRGTSG 165


>dbj|BAJ90823.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326504092|dbj|BAK02832.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 389

 Score =  199 bits (505), Expect = 5e-49
 Identities = 100/173 (57%), Positives = 122/173 (70%), Gaps = 1/173 (0%)
 Frame = +3

Query: 42  SPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIR 221
           +P   A   FG PWP+ N GL Y D  + + + +  TL+DFYS NYKSSAP  GW+ RIR
Sbjct: 9   TPPPPANYFFGRPWPDLNAGLSYTDTFRGADAETTTTLIDFYSENYKSSAPLPGWIHRIR 68

Query: 222 NGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQV 401
           NGQI+VDG VV + D ILS GS LVYHR+ WKEP APY + +LYED+ +L +NKP+GLQV
Sbjct: 69  NGQITVDGQVVTDPDIILSEGSKLVYHRLSWKEPFAPYLLQVLYEDDDMLALNKPSGLQV 128

Query: 402 LPGGLFQQRTVLAQLQWKYTQSTNANMITDK-IKHHSIACPTPVHRLGRGTSG 557
           LP GLFQQRTVLAQLQWK  +   ++    K ++ H    P PVHRLGRGTSG
Sbjct: 129 LPKGLFQQRTVLAQLQWKEWKMPPSSCSKKKNVQLH----PVPVHRLGRGTSG 177


>gb|ESW15679.1| hypothetical protein PHAVU_007G093000g [Phaseolus vulgaris]
          Length = 365

 Score =  198 bits (504), Expect = 7e-49
 Identities = 97/164 (59%), Positives = 122/164 (74%)
 Frame = +3

Query: 66  EFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDG 245
           +FG+PWPE N+GL Y D+V+  SS S +TL++FY   YKSSAP +GWLQRI++GQI+ DG
Sbjct: 6   KFGIPWPECNDGLSYDDVVR--SSDSGLTLIEFYFTKYKSSAPLQGWLQRIKSGQITFDG 63

Query: 246 MVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQ 425
            VV ++ T+L  GS LVYHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPGGLFQQ
Sbjct: 64  RVVTDSSTVLRVGSKLVYHRLPWKEPDAPHMIEVLYEDDEMIALNKPSGLQVLPGGLFQQ 123

Query: 426 RTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           RTVL QLQW+      AN+       H    P PVHRLGRGTSG
Sbjct: 124 RTVLTQLQWE------ANL-------HKKPHPVPVHRLGRGTSG 154


>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score =  197 bits (502), Expect = 1e-48
 Identities = 98/164 (59%), Positives = 123/164 (75%)
 Frame = +3

Query: 66  EFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDG 245
           + GVPWPE N+GL Y D+V+PS +   +TL++FYS  YKSSAP +GWLQRI++ QI+VD 
Sbjct: 6   KIGVPWPELNDGLSYNDVVRPSDAG--LTLIEFYSTKYKSSAPLQGWLQRIKSDQITVDA 63

Query: 246 MVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQ 425
            VV + +T+L  GS LVYHR+PWKEP AP+ I +LYED+ ++ +NKP+GLQVLPGGLFQQ
Sbjct: 64  KVVTDPNTLLRAGSKLVYHRLPWKEPDAPHTIQVLYEDDDIIALNKPSGLQVLPGGLFQQ 123

Query: 426 RTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           RTVL QLQW+    TN N  T   + H    P PVHRLGRGTSG
Sbjct: 124 RTVLTQLQWE----TN-NKCT--FEAHQKPHPVPVHRLGRGTSG 160


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  197 bits (501), Expect = 1e-48
 Identities = 97/163 (59%), Positives = 123/163 (75%)
 Frame = +3

Query: 69  FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           FGVPWP++N+GL Y D+V  S+S S +TL+D+YS+ +K+SAP +GWLQRI  GQI+VDG 
Sbjct: 5   FGVPWPDFNDGLTYNDVV--SASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGT 62

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VV    TIL  GS LVYHR+PW+EP APY + ILYED+ ++ +NKP+GLQVLPGGLFQQR
Sbjct: 63  VVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQR 122

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           TVL QLQW+   +   N +    + HS+    PVHRLGRGTSG
Sbjct: 123 TVLTQLQWR---ANKQNSLPACQESHSV----PVHRLGRGTSG 158


>ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
          Length = 348

 Score =  197 bits (501), Expect = 1e-48
 Identities = 97/163 (59%), Positives = 123/163 (75%)
 Frame = +3

Query: 69  FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           FGVPWP++N+GL Y D+V  S+S S +TL+D+YS+ +K+SAP +GWLQRI  GQI+VDG 
Sbjct: 5   FGVPWPDFNDGLTYNDVV--SASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGT 62

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VV    TIL  GS LVYHR+PW+EP APY + ILYED+ ++ +NKP+GLQVLPGGLFQQR
Sbjct: 63  VVTEPKTILRAGSKLVYHRLPWQEPDAPYLLEILYEDDDVIALNKPSGLQVLPGGLFQQR 122

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           TVL QLQW+   +   N +    + HS+    PVHRLGRGTSG
Sbjct: 123 TVLTQLQWR---ANKQNSLPACQESHSV----PVHRLGRGTSG 158


>ref|XP_002312025.1| hypothetical protein POPTR_0008s04160g [Populus trichocarpa]
           gi|222851845|gb|EEE89392.1| hypothetical protein
           POPTR_0008s04160g [Populus trichocarpa]
          Length = 377

 Score =  196 bits (497), Expect = 4e-48
 Identities = 95/163 (58%), Positives = 119/163 (73%)
 Frame = +3

Query: 69  FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           FG PWP+ NEGL Y D+V  SS S  +TL+ FYS+ YK+SAP +GWLQRI NGQI++DG 
Sbjct: 14  FGSPWPDLNEGLFYNDVVSTSSDSG-LTLIHFYSSKYKNSAPLQGWLQRIHNGQITIDGE 72

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VVK    IL  G  LVYHR+PW+EP APY + +LYED+ ++ +NKP GLQVLPGGLFQQR
Sbjct: 73  VVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPGLQVLPGGLFQQR 132

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           TVL QLQW+ ++ +++  I         + P PVHRLGRGTSG
Sbjct: 133 TVLMQLQWRASKGSSSLAIQG-------SHPVPVHRLGRGTSG 168


>ref|XP_004233537.1| PREDICTED: RNA pseudourine synthase 5-like [Solanum lycopersicum]
          Length = 402

 Score =  194 bits (494), Expect = 9e-48
 Identities = 94/163 (57%), Positives = 120/163 (73%)
 Frame = +3

Query: 69  FGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISVDGM 248
           FGVPWP+ NEGL Y DIV+P+ +   +TL++FY   YK+SAP +GWLQRI+N QI++DG 
Sbjct: 37  FGVPWPQRNEGLSYHDIVRPTDAG--LTLIEFYFRKYKNSAPLQGWLQRIQNKQITIDGK 94

Query: 249 VVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLFQQR 428
           VV   DT L  G+ LVYHR+PW+EP APY + +L+ED++L+V+NKP+GLQVLPGGL+QQR
Sbjct: 95  VVILPDTELRAGAELVYHRLPWREPDAPYLLEVLFEDDYLIVVNKPSGLQVLPGGLYQQR 154

Query: 429 TVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           TVL QLQW   + T  +    K        P PVHRLGRGTSG
Sbjct: 155 TVLTQLQWHACKLTTTSSGCQKTH------PVPVHRLGRGTSG 191


>ref|XP_004984840.1| PREDICTED: RNA pseudouridine synthase 5-like [Setaria italica]
          Length = 395

 Score =  194 bits (493), Expect = 1e-47
 Identities = 95/172 (55%), Positives = 120/172 (69%)
 Frame = +3

Query: 42  SPSVVAPVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIR 221
           +P   A   FG PWPE NEGL Y D  + + + +  TL++FYS+NYKSSAP  GW++RIR
Sbjct: 14  APPPGALYSFGTPWPELNEGLSYSDEFRCADADAATTLIEFYSSNYKSSAPLLGWIKRIR 73

Query: 222 NGQISVDGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQV 401
           NGQI+VDG V+ + D  L  GS LVYHR+PW EP APY + +LYED+ ++ +NKP+GLQV
Sbjct: 74  NGQITVDGQVITDPDMTLRDGSKLVYHRLPWPEPFAPYLLEVLYEDDDMVALNKPSGLQV 133

Query: 402 LPGGLFQQRTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           LP GLFQQRTVLAQ+Q K  + T+        + H    P PVHRLGRGTSG
Sbjct: 134 LPKGLFQQRTVLAQVQMKDWKMTSCCSKRKDAQSH----PVPVHRLGRGTSG 181


>ref|NP_974416.1| RNA pseudourine synthase 5 [Arabidopsis thaliana]
           gi|229891781|sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA
           pseudouridine synthase 5; AltName: Full=RNA
           pseudouridylate synthase 5; AltName: Full=RNA-uridine
           isomerase 5 gi|332645400|gb|AEE78921.1| RNA pseudourine
           synthase 5 [Arabidopsis thaliana]
          Length = 369

 Score =  194 bits (492), Expect = 2e-47
 Identities = 96/166 (57%), Positives = 117/166 (70%)
 Frame = +3

Query: 60  PVEFGVPWPEYNEGLDYKDIVKPSSSSSCVTLLDFYSANYKSSAPREGWLQRIRNGQISV 239
           P   G+PWPE N+GL YKD +  SS S   T+ +FY   YKSSAP  GW+QRI+NGQI +
Sbjct: 5   PQRIGLPWPELNDGLAYKDAIS-SSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQI 63

Query: 240 DGMVVKNADTILSPGSTLVYHRVPWKEPAAPYKIIILYEDEHLLVINKPAGLQVLPGGLF 419
           DG VVK+ +T+L  GS LVY R+PWKEP  PY + +LYED+ L+ +NKP+GLQVLPGGLF
Sbjct: 64  DGEVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLF 123

Query: 420 QQRTVLAQLQWKYTQSTNANMITDKIKHHSIACPTPVHRLGRGTSG 557
           QQRTVL QLQW +    N + I  +   H    P PVHRLGRGTSG
Sbjct: 124 QQRTVLTQLQWCF--GKNDSYIGSRESPH----PVPVHRLGRGTSG 163