BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00025927
         (1074 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006359014.1| PREDICTED: pentatricopeptide repeat-containi...   132   3e-28
ref|XP_004148385.1| PREDICTED: pentatricopeptide repeat-containi...   127   6e-27
ref|XP_004237845.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-26
ref|XP_006480451.1| PREDICTED: pentatricopeptide repeat-containi...   125   2e-26
ref|XP_006480449.1| PREDICTED: pentatricopeptide repeat-containi...   125   2e-26
ref|XP_006428630.1| hypothetical protein CICLE_v10011185mg [Citr...   125   2e-26
gb|EPS67134.1| hypothetical protein M569_07642 [Genlisea aurea]       124   5e-26
ref|XP_006838510.1| hypothetical protein AMTR_s00002p00179800 [A...   123   1e-25
ref|XP_006658575.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-25
ref|XP_003631463.1| PREDICTED: pentatricopeptide repeat-containi...   120   9e-25
ref|XP_002533788.1| pentatricopeptide repeat-containing protein,...   117   6e-24
gb|EOX92962.1| Pentatricopeptide repeat superfamily protein, put...   117   8e-24
dbj|BAC21367.1| pentatricopeptide repeat-containing protein -lik...   117   1e-23
ref|NP_001059695.2| Os07g0495300 [Oryza sativa Japonica Group] g...   117   1e-23
gb|EAZ03945.1| hypothetical protein OsI_26081 [Oryza sativa Indi...   117   1e-23
gb|EMJ00618.1| hypothetical protein PRUPE_ppa026443mg [Prunus pe...   113   1e-22
ref|XP_004301723.1| PREDICTED: pentatricopeptide repeat-containi...   112   3e-22
gb|EOX94696.1| Pentatricopeptide repeat (PPR) superfamily protei...   111   6e-22
ref|XP_006385578.1| hypothetical protein POPTR_0003s08270g [Popu...   110   1e-21
emb|CBI28722.3| unnamed protein product [Vitis vinifera]              110   1e-21

>ref|XP_006359014.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like isoform X1 [Solanum tuberosum]
          Length = 715

 Score =  132 bits (331), Expect = 3e-28
 Identities = 84/269 (31%), Positives = 146/269 (54%), Gaps = 2/269 (0%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPF-VGKMLLNIAYSADRKTLRKGLTVVY 268
           L  +L +A+ +HN   AW  +   + + G+  PF V K+L  ++YS+D + L+K   +V 
Sbjct: 84  LLGKLESALRNHNLEEAWETYKDFKRLYGFPDPFLVDKLLTKLSYSSDSRWLKKACNMVG 143

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
           S+L+++   +   + ++ LCLSL R  M V+A ++LRLML +   P       I  H V 
Sbjct: 144 SILKEKR-EMLRTELMTKLCLSLARAQMPVQASSILRLMLDKGNLPPIDMLGMIIFHMVK 202

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           ++ G  ++ +IL EIC    ++        E +K + +LFN+VL +C  FG   KG +++
Sbjct: 203 TDTGMIVSSNILIEICGSSQQLTTKKSTCTELNKHNTLLFNLVLDACARFGSSSKGHQII 262

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQC-QQFY 805
           ++M +  + T D  T+  ++ I+E N  R+EL   K           V   ++ C QQFY
Sbjct: 263 ELMAQVGV-TADAHTISIISLIHEMNGMRDELKKFKKHIDQ------VSVPLVSCYQQFY 315

Query: 806 SSLLRIYCDLDELDFASELVLELLKKQIS 892
            SLL ++   +++D AS+LV ++   Q+S
Sbjct: 316 ESLLCLHFKFNDIDAASDLVQDIYGFQVS 344


>ref|XP_004148385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like [Cucumis sativus]
           gi|449530891|ref|XP_004172425.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g17616-like [Cucumis sativus]
          Length = 714

 Score =  127 bits (320), Expect = 6e-27
 Identities = 81/280 (28%), Positives = 150/280 (53%), Gaps = 5/280 (1%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRP-FVGKMLLNIAYSADRKTLRKGLTVVY 268
           L  +L  A+ DH    AW  F+  R + G+    F+  ++  ++Y++D K L K   +V 
Sbjct: 88  LLGKLEIALKDHQIDEAWELFSDFRKLYGFPNDNFLLMLVSQLSYTSDCKRLHKAYNLVL 147

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
              +++   L  +D+++ L L L R  M + A  +LRLML+    P     + + +H V 
Sbjct: 148 QNWKEKPVVL-QLDTLTKLVLGLARSQMPIPASEILRLMLQTRRLPRMELLQLVILHMVK 206

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           SE GT++A +IL +IC    +   +     +  KP  +LFN+VL +C+ F +  KG ++V
Sbjct: 207 SEVGTYLASNILVQICDCFLQQATSRNDQAKSMKPDTMLFNLVLHACVRFKLSFKGQQLV 266

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYS 808
           ++M ++++   D  T++ +A+IYE N  R+EL ++K+     +P +     +    QFY 
Sbjct: 267 ELMSQTEV-VADAHTIVLIARIYEMNDQRDELKNLKTHIDQVSPSL-----VCHYCQFYD 320

Query: 809 SLLRIYCDLDELDFASELVLELLK----KQISKDYWKVEK 916
           +LL ++   D+ D A+ L+LE+ +      I K + +++K
Sbjct: 321 ALLSLHFKYDDFDSAANLMLEICRFGESNSIQKHWRELQK 360


>ref|XP_004237845.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like [Solanum lycopersicum]
          Length = 711

 Score =  126 bits (316), Expect = 2e-26
 Identities = 83/269 (30%), Positives = 144/269 (53%), Gaps = 2/269 (0%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPF-VGKMLLNIAYSADRKTLRKGLTVVY 268
           L  +L +A+ +HN   AW  +   + + G+  PF V K+L  ++YS+D + L+K   +V 
Sbjct: 84  LLGKLESALRNHNLEEAWETYKDFKRLYGFPDPFLVDKLLTKLSYSSDSRWLKKACNIVG 143

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
           S+L+++   +   + ++ LCLSL R  M ++A ++LRLML++   P       I  H V 
Sbjct: 144 SILKEKR-EMLRTELMTKLCLSLARTQMPIQASSILRLMLEKGNLPPIDMLGMIIFHMVK 202

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           S+ G  ++ +IL EI     ++       L +H  + +LFN+VL +C  FG   KG +++
Sbjct: 203 SDTGMIVSSNILIEIYGSSHQLTTKKSTELNKH--NTLLFNLVLDACARFGSSSKGHQII 260

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQC-QQFY 805
           ++M +  + T D  T+  ++ I+E N  R+EL   K           V   +  C QQFY
Sbjct: 261 ELMAQVGV-TADAHTISIISLIHEMNGMRDELKKFKKHIDQ------VSVPLFSCYQQFY 313

Query: 806 SSLLRIYCDLDELDFASELVLELLKKQIS 892
            SLL ++   +++D AS LV ++   Q+S
Sbjct: 314 ESLLCLHFKFNDIDAASNLVQDIYGFQVS 342


>ref|XP_006480451.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like isoform X3 [Citrus sinensis]
          Length = 646

 Score =  125 bits (315), Expect = 2e-26
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 1/262 (0%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGY-SRPFVGKMLLNIAYSADRKTLRKGLTVVY 268
           L  +L +A  +H    AW  F   + + G   R  V + ++++ YSA+   L+K   +V 
Sbjct: 81  LLRKLESASKNHQAGEAWETFNDFQRLHGIPERHVVNRFIIDLCYSAEPHWLQKACDLVL 140

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
            + + +A  L  +D ++ L LSL R  M V A  +LRLML     P +     +F+H V 
Sbjct: 141 KIQKGKA-DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPRSDLLSLVFVHMVK 199

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           +E GT +A + L ++C +   +        E  KP  ++FN+VL +C+ FG   KG  ++
Sbjct: 200 TEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIM 259

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYS 808
           ++M ++ +   D  +++ +A+I+E NC R+EL   K      +   P   H    QQFY 
Sbjct: 260 ELMSQTGV-VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS--TPFAHHY---QQFYE 313

Query: 809 SLLRIYCDLDELDFASELVLEL 874
           SLL ++   D++D A EL+L++
Sbjct: 314 SLLSLHFKFDDIDAAGELILDM 335


>ref|XP_006480449.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like isoform X1 [Citrus sinensis]
           gi|568853626|ref|XP_006480450.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g17616-like isoform X2 [Citrus sinensis]
          Length = 712

 Score =  125 bits (315), Expect = 2e-26
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 1/262 (0%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGY-SRPFVGKMLLNIAYSADRKTLRKGLTVVY 268
           L  +L +A  +H    AW  F   + + G   R  V + ++++ YSA+   L+K   +V 
Sbjct: 81  LLRKLESASKNHQAGEAWETFNDFQRLHGIPERHVVNRFIIDLCYSAEPHWLQKACDLVL 140

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
            + + +A  L  +D ++ L LSL R  M V A  +LRLML     P +     +F+H V 
Sbjct: 141 KIQKGKA-DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPRSDLLSLVFVHMVK 199

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           +E GT +A + L ++C +   +        E  KP  ++FN+VL +C+ FG   KG  ++
Sbjct: 200 TEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIM 259

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYS 808
           ++M ++ +   D  +++ +A+I+E NC R+EL   K      +   P   H    QQFY 
Sbjct: 260 ELMSQTGV-VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS--TPFAHHY---QQFYE 313

Query: 809 SLLRIYCDLDELDFASELVLEL 874
           SLL ++   D++D A EL+L++
Sbjct: 314 SLLSLHFKFDDIDAAGELILDM 335


>ref|XP_006428630.1| hypothetical protein CICLE_v10011185mg [Citrus clementina]
           gi|557530687|gb|ESR41870.1| hypothetical protein
           CICLE_v10011185mg [Citrus clementina]
          Length = 712

 Score =  125 bits (315), Expect = 2e-26
 Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 1/262 (0%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGY-SRPFVGKMLLNIAYSADRKTLRKGLTVVY 268
           L  +L +A  +H    AW  F   + + G   R  V + ++++ YSA+   L+K   +V 
Sbjct: 81  LLRKLESASKNHQAGEAWETFNDFQRLHGIPERHVVNRFIIDLCYSAEPHWLQKACDLVL 140

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
            + + +A  L  +D ++ L LSL R  M V A  +LRLML     P +     +F+H V 
Sbjct: 141 KIQKGKA-DLLQLDLLAKLSLSLARAQMPVPASMILRLMLGRENLPRSDLLSLVFVHMVK 199

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           +E GT +A + L ++C +   +        E  KP  ++FN+VL +C+ FG   KG  ++
Sbjct: 200 TEIGTCLASNFLIQLCDVFLHLSAEKSNGAELIKPDTMIFNLVLHACVRFGSSLKGQHIM 259

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYS 808
           ++M ++ +   D  +++ +A+I+E NC R+EL   K      +   P   H    QQFY 
Sbjct: 260 ELMSQTGV-VADAHSIIILAQIHEMNCQRDELKKFKCYIDQLS--TPFAHHY---QQFYE 313

Query: 809 SLLRIYCDLDELDFASELVLEL 874
           SLL ++   D++D A EL+L++
Sbjct: 314 SLLSLHFKFDDIDAAGELILDM 335


>gb|EPS67134.1| hypothetical protein M569_07642 [Genlisea aurea]
          Length = 692

 Score =  124 bits (312), Expect = 5e-26
 Identities = 84/285 (29%), Positives = 148/285 (51%), Gaps = 2/285 (0%)
 Frame = +2

Query: 26  KMMKIITADARALPHIAGQIHS-LKSELLTAIDDHNHFTAWYCFTRLRNIDGY-SRPFVG 199
           K +   +A  + L H+ G   S L  ++ T++ +     AW  +  L+NI GY  +  + 
Sbjct: 46  KELSTASARKKKLCHLKGPSKSTLLGQISTSLKEKKIIEAWETYYALKNIYGYPDKCVLA 105

Query: 200 KMLLNIAYSADRKTLRKGLTVVYSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLR 379
            +L   +YSAD K L+    ++ S+  ++   L +++ V  + LSL R  + V A ++LR
Sbjct: 106 DILTESSYSADSKCLKWACKLILSIANEKPS-LLNLEVVYKIALSLARAQLPVSAASVLR 164

Query: 380 LMLKEHLFPHTLTFRSIFMHFVASENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSI 559
           + L +   P T   RS+FMH + +E+G  +  ++L++IC +  K+  N     E  KP  
Sbjct: 165 VALGKRRLPPTDVLRSMFMHLLKTESGLHLTSNMLDQICWIFQKLNGNKSAQKELTKPDT 224

Query: 560 VLFNMVLKSCLDFGMFRKGLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKS 739
           ++FN+VL +C  FG   KG  +++ M +  +   DV T   VA+IYE N  R+EL  + +
Sbjct: 225 IIFNLVLDACASFGTPLKGQLIIERMAQLGVI-GDVNTAAIVARIYEMNGMRDELRKLNA 283

Query: 740 VFTSFTPGMPVKFHILQCQQFYSSLLRIYCDLDELDFASELVLEL 874
           +  +        +      QFY SLL ++   +++D AS L++ L
Sbjct: 284 LVDTVCRTSDNLY-----LQFYDSLLSLHLKFNDVDSASNLLIGL 323


>ref|XP_006838510.1| hypothetical protein AMTR_s00002p00179800 [Amborella trichopoda]
           gi|548841016|gb|ERN01079.1| hypothetical protein
           AMTR_s00002p00179800 [Amborella trichopoda]
          Length = 775

 Score =  123 bits (309), Expect = 1e-25
 Identities = 80/269 (29%), Positives = 147/269 (54%), Gaps = 7/269 (2%)
 Frame = +2

Query: 98  SELLTAIDDHNHFTAWYCFTRLRNIDGY-SRPFVGKMLLNIAYSADRKTLRKGLTVVYSV 274
           ++L  A+ DH    AW  F   + + G+  +  + +M+L + YS D + L++   +V  V
Sbjct: 107 NKLELALKDHRWDEAWEAFHDFKKLHGFPQQTLLRRMILELCYSPDARWLQRAYDLVLMV 166

Query: 275 LRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVASE 454
             ++       D ++++ LSL R  M V A T+LRLML+ + FP    + ++F+H V SE
Sbjct: 167 QEEKRWAFLRHDPLAMVSLSLSRAQMPVPASTVLRLMLENNSFPPKSIWSAVFLHLVKSE 226

Query: 455 NGTFIACDILEEICSLRAKVRPNN------KYVLERHKPSIVLFNMVLKSCLDFGMFRKG 616
            G  +A +IL EIC   ++ + +         ++E +  + V FN+VL +CL +G   K 
Sbjct: 227 KGAHVASEILIEICECLSQHKISRTSGALINSLMEVYSYATV-FNLVLNACLRYGSTGKA 285

Query: 617 LEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQ 796
             ++D+M +  + + D  +++ +A I+E+N  R+EL  +K       P +   +     Q
Sbjct: 286 QLLLDLMAKIGI-SGDANSIVLMALIHERNGKRDELRKLKKHIDEVPPLLDSHY-----Q 339

Query: 797 QFYSSLLRIYCDLDELDFASELVLELLKK 883
           +FY SLL+++   +++D ASELVL+L ++
Sbjct: 340 KFYDSLLKLHFMFNDIDAASELVLDLYRR 368


>ref|XP_006658575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like [Oryza brachyantha]
          Length = 729

 Score =  122 bits (305), Expect = 3e-25
 Identities = 82/288 (28%), Positives = 154/288 (53%), Gaps = 3/288 (1%)
 Frame = +2

Query: 47  ADARALPHIAGQIHSLKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPFV-GKMLLNIAY 223
           A + ALP  A    +L   +  A+D  N   A       + + G   P V  +M+L ++Y
Sbjct: 88  AASDALPWEAPSRETLLRTIDAALDGGNVDDAVQALANYKTLHGLPEPRVLDRMILTLSY 147

Query: 224 SADRKTLRKGLTVVYSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLF 403
           ++ R+ L++   +V SV R+    L +  S++ L L+L R  M V A  ++R++L+    
Sbjct: 148 ASSRRWLQRAFDLVLSVYRRNG-NLLNRGSLTRLALALARDQMPVPASAVVRIVLESGRL 206

Query: 404 PHTLTFRSIFMHFVASENGTFIACDILEEICSLRAKVRPNNKYV--LERHKPSIVLFNMV 577
           P       +F+H V S+ G+++A D+L E C        + + +  L+  K ++ +FNMV
Sbjct: 207 PDVDMLTMVFLHMVKSQVGSYLAADVLCETCECFLDQIGDRRQLKKLDPIKSNVTMFNMV 266

Query: 578 LKSCLDFGMFRKGLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFT 757
           LKSC+DF    K  +++++M    +   DV T++  ++++E    R+EL++MK    SF+
Sbjct: 267 LKSCVDFRCMIKAQKILELMSLVGI-VADVTTVVIASRVFEMIGQRDELMNMKRSIDSFS 325

Query: 758 PGMPVKFHILQCQQFYSSLLRIYCDLDELDFASELVLELLKKQISKDY 901
             +P   H    Q FY SLL ++   +++D A++L+++L ++Q  + +
Sbjct: 326 -SLPFIEHY---QHFYESLLNLHFKYNDMDAAAQLLVDLYRQQKPRSF 369


>ref|XP_003631463.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like [Vitis vinifera]
          Length = 486

 Score =  120 bits (301), Expect = 9e-25
 Identities = 81/286 (28%), Positives = 152/286 (53%), Gaps = 2/286 (0%)
 Frame = +2

Query: 77  GQIHS-LKSELLTAIDDHNHFTAWYCFTRLRNIDGY-SRPFVGKMLLNIAYSADRKTLRK 250
           G  H+ L  +L  A+ DH    AW  F  ++ + G+ S   V +++  ++YS++   L+K
Sbjct: 23  GSCHAVLLRKLEIALKDHQVDEAWETFKDIKRLYGFPSHSLVSRLITELSYSSNPHWLQK 82

Query: 251 GLTVVYSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSI 430
              +VY +L++++  L S DS++ L LSL R  M + A  +LRLML++   P       I
Sbjct: 83  ACDLVYLILKEKSDLLHS-DSLTKLSLSLSRAQMPIPASMILRLMLEKGSVPQKNVLWLI 141

Query: 431 FMHFVASENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFR 610
            +H V +E GT++A + L +IC     +  +     +  KP  ++FN+VL +C+ FG   
Sbjct: 142 ILHMVKTEIGTYLASNYLVQICDHFLLLSASKSNHAKLIKPDTMIFNLVLDACVRFGSSF 201

Query: 611 KGLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQ 790
           KG +++++M +  +   D  +++ +A+I+E N  R++L   K      +  +   +    
Sbjct: 202 KGQQIIELMPQVGV-GADAHSIIIIAQIHEMNGQRDDLKKFKCHIDQVSIQLACHY---- 256

Query: 791 CQQFYSSLLRIYCDLDELDFASELVLELLKKQISKDYWKVEKEKHR 928
            +QFY SLL ++   +++D A+ LVL++ +   S    K   + H+
Sbjct: 257 -RQFYDSLLSLHFKFNDIDGAAGLVLDMCRCWDSLSIQKDRNDPHK 301


>ref|XP_002533788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526289|gb|EEF28601.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 689

 Score =  117 bits (294), Expect = 6e-24
 Identities = 75/262 (28%), Positives = 136/262 (51%), Gaps = 1/262 (0%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPFVG-KMLLNIAYSADRKTLRKGLTVVY 268
           L  +L  ++ DH    AW  F   + + G+ + +V  ++L  ++YS+D + L+K   +V 
Sbjct: 64  LLRKLEVSLKDHRLNEAWVTFNDFKTLYGFPKGYVVCRLLAELSYSSDPRWLQKACNLVS 123

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
            + ++++  L   ++++ L LS  R  M + A  +LR++L+    P     R I  H V 
Sbjct: 124 QIFKEKS-DLLPTETLTKLSLSFARAQMPIPASMVLRVILERENTPAVSLLRLIVFHMVK 182

Query: 449 SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
           +E GT +A + L +IC    ++  N     +  K   ++FN+VL+ C+ F    KG E+V
Sbjct: 183 TEVGTCLASNFLIQICECLLRISANRNDHAKVIKLDTLIFNLVLEGCVRFKSSLKGQELV 242

Query: 629 DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYS 808
           + M R+ +   D  +++ +A+IYE N  R+E+   K      +        +   QQ Y 
Sbjct: 243 EWMSRTGIIA-DAHSVVIIAEIYEMNGLRDEIKKFKDHIDQVSAPF-----VCHYQQLYE 296

Query: 809 SLLRIYCDLDELDFASELVLEL 874
            LL ++ + D+LD ASELVL++
Sbjct: 297 VLLNLHFEFDDLDAASELVLDM 318


>gb|EOX92962.1| Pentatricopeptide repeat superfamily protein, putative isoform 1
           [Theobroma cacao] gi|508701067|gb|EOX92963.1|
           Pentatricopeptide repeat superfamily protein, putative
           isoform 1 [Theobroma cacao]
          Length = 708

 Score =  117 bits (293), Expect = 8e-24
 Identities = 75/266 (28%), Positives = 139/266 (52%), Gaps = 1/266 (0%)
 Frame = +2

Query: 140 AWYCFTRLRNIDGY-SRPFVGKMLLNIAYSADRKTLRKGLTVVYSVLRKRACRLFSIDSV 316
           AW  F   + + G+ +   V + +  ++YS+    L+K   +V  V ++++  L   D +
Sbjct: 91  AWETFNDFKRLYGFPNHLLVSRFITQLSYSSSPHWLQKACDLVMIVSKEKSYHL-QPDIL 149

Query: 317 SLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVASENGTFIACDILEEIC 496
           + L LSL R  M + + T+LRLML++ + P       +F H V +E GT +A ++L +IC
Sbjct: 150 AKLILSLARAQMPIPSSTILRLMLEKEILPPINVLWLVFQHMVKTEVGTCVASNLLVQIC 209

Query: 497 SLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVVDMMHRSKLFTPDVCTL 676
               +      +     KP  ++FN+VL +C+ F    KG +++++M ++ +   D  ++
Sbjct: 210 DYYIRFCSEKSHYANFLKPDTMIFNLVLDACVRFASSLKGQQIIELMSKTGV-VADAHSI 268

Query: 677 LFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYSSLLRIYCDLDELDFAS 856
             +A+I+E N  R+EL      F      +PV   +   QQFY  LL ++   D++D A+
Sbjct: 269 DIIAQIHEMNGHRDEL----KKFKDHIAPLPVPL-VSHYQQFYECLLSLHFKFDDIDAAA 323

Query: 857 ELVLELLKKQISKDYWKVEKEKHRNR 934
           ELVLE+ + + S    ++ K+  + R
Sbjct: 324 ELVLEMNRSRESHPIGELRKDYQKPR 349


>dbj|BAC21367.1| pentatricopeptide repeat-containing protein -like protein [Oryza
           sativa Japonica Group] gi|50509198|dbj|BAD30402.1|
           pentatricopeptide repeat-containing protein -like
           protein [Oryza sativa Japonica Group]
           gi|125600311|gb|EAZ39887.1| hypothetical protein
           OsJ_24325 [Oryza sativa Japonica Group]
          Length = 692

 Score =  117 bits (292), Expect = 1e-23
 Identities = 80/284 (28%), Positives = 149/284 (52%), Gaps = 3/284 (1%)
 Frame = +2

Query: 44  TADARALPHIAGQIHSLKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPFV-GKMLLNIA 220
           T  A+ LP  A    +L   +  A+DD N       F   + + G   P V  +M+++++
Sbjct: 51  TIAAKILPWEAPSRETLLRTINAALDDGNVDDVLQAFANYKTLHGLPEPRVLDRMIVSLS 110

Query: 221 YSADRKTLRKGLTVVYSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHL 400
           Y++ R+ L++   +V SV +     L +  S+  L L+L R  M + A T++R++L+   
Sbjct: 111 YASSRRWLQRAFDMVLSVYQCNG-NLLNCGSLMKLALALARDQMPIPASTVVRIILESGK 169

Query: 401 FPHTLTFRSIFMHFVASENGTFIACDILEEICSLRAKVRPNNKYV--LERHKPSIVLFNM 574
            P       +++H V S+ G+++A D+L E C    +   + + +  L+  K ++ LFNM
Sbjct: 170 LPDVDMLTMVYLHMVKSQVGSYLAADVLCETCECFLEQIGDRRQLKKLDPIKSNVTLFNM 229

Query: 575 VLKSCLDFGMFRKGLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSF 754
           VLKSC+DF    K   ++++M    +   DV T+   + ++E    + EL++MK    SF
Sbjct: 230 VLKSCVDFKCMIKAQRIMELMSLVGV-VADVNTVAIASLVFEMVGQQVELVNMKRSIDSF 288

Query: 755 TPGMPVKFHILQCQQFYSSLLRIYCDLDELDFASELVLELLKKQ 886
              +P   H L    FY SLL ++   +++D A++L+++L ++Q
Sbjct: 289 A-SLPFIQHYL---YFYGSLLNLHFKYNDMDAAAQLLVDLYRQQ 328


>ref|NP_001059695.2| Os07g0495300 [Oryza sativa Japonica Group]
           gi|255677782|dbj|BAF21609.2| Os07g0495300 [Oryza sativa
           Japonica Group]
          Length = 588

 Score =  117 bits (292), Expect = 1e-23
 Identities = 80/284 (28%), Positives = 149/284 (52%), Gaps = 3/284 (1%)
 Frame = +2

Query: 44  TADARALPHIAGQIHSLKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPFV-GKMLLNIA 220
           T  A+ LP  A    +L   +  A+DD N       F   + + G   P V  +M+++++
Sbjct: 51  TIAAKILPWEAPSRETLLRTINAALDDGNVDDVLQAFANYKTLHGLPEPRVLDRMIVSLS 110

Query: 221 YSADRKTLRKGLTVVYSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHL 400
           Y++ R+ L++   +V SV +     L +  S+  L L+L R  M + A T++R++L+   
Sbjct: 111 YASSRRWLQRAFDMVLSVYQCNG-NLLNCGSLMKLALALARDQMPIPASTVVRIILESGK 169

Query: 401 FPHTLTFRSIFMHFVASENGTFIACDILEEICSLRAKVRPNNKYV--LERHKPSIVLFNM 574
            P       +++H V S+ G+++A D+L E C    +   + + +  L+  K ++ LFNM
Sbjct: 170 LPDVDMLTMVYLHMVKSQVGSYLAADVLCETCECFLEQIGDRRQLKKLDPIKSNVTLFNM 229

Query: 575 VLKSCLDFGMFRKGLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSF 754
           VLKSC+DF    K   ++++M    +   DV T+   + ++E    + EL++MK    SF
Sbjct: 230 VLKSCVDFKCMIKAQRIMELMSLVGV-VADVNTVAIASLVFEMVGQQVELVNMKRSIDSF 288

Query: 755 TPGMPVKFHILQCQQFYSSLLRIYCDLDELDFASELVLELLKKQ 886
              +P   H L    FY SLL ++   +++D A++L+++L ++Q
Sbjct: 289 A-SLPFIQHYL---YFYGSLLNLHFKYNDMDAAAQLLVDLYRQQ 328


>gb|EAZ03945.1| hypothetical protein OsI_26081 [Oryza sativa Indica Group]
          Length = 718

 Score =  117 bits (292), Expect = 1e-23
 Identities = 80/284 (28%), Positives = 148/284 (52%), Gaps = 3/284 (1%)
 Frame = +2

Query: 44  TADARALPHIAGQIHSLKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPFV-GKMLLNIA 220
           T  A+ LP       +L   +  A+DD N       F   + + G   P V  +M+++++
Sbjct: 115 TIAAKILPWEVPSRETLLRTINAALDDGNVDDVLQAFANYKTLHGLPEPRVLDRMIVSLS 174

Query: 221 YSADRKTLRKGLTVVYSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHL 400
           Y++ R+ L++   +V SV +     L +  S+  L L+L R  M + A T++R++L+   
Sbjct: 175 YASSRRWLQRAFDMVLSVYQCNG-NLLNCGSLMKLALALARDQMPIPASTVVRIILESGK 233

Query: 401 FPHTLTFRSIFMHFVASENGTFIACDILEEICSLRAKVRPNNKYV--LERHKPSIVLFNM 574
            P       +++H V S+ G+++A D+L E C    +   + + +  L+  K ++ LFNM
Sbjct: 234 LPDVDMLTMVYLHMVKSQVGSYLAADVLCETCECFLEQIGDRRQLKKLDPIKSNVTLFNM 293

Query: 575 VLKSCLDFGMFRKGLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSF 754
           VLKSC+DF    K   ++++M    +   DV T+   + ++E    R EL++MK    SF
Sbjct: 294 VLKSCVDFKCMIKAQRIMELMSLVGV-VADVNTVAIASLVFEMVGQRVELVNMKRSIDSF 352

Query: 755 TPGMPVKFHILQCQQFYSSLLRIYCDLDELDFASELVLELLKKQ 886
              +P   H L    FY SLL ++   +++D A++L+++L ++Q
Sbjct: 353 A-SLPFIQHYL---YFYGSLLNLHFKYNDMDAAAQLLVDLYRQQ 392


>gb|EMJ00618.1| hypothetical protein PRUPE_ppa026443mg [Prunus persica]
          Length = 789

 Score =  113 bits (282), Expect = 1e-22
 Identities = 81/269 (30%), Positives = 136/269 (50%), Gaps = 5/269 (1%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRP-FVGKMLLNIAYSADRKTLRKGLTVVY 268
           L  E+ +AID+H    AW    +   ++G+ R   V K+L +   S D + L +   +V 
Sbjct: 96  LTMEIQSAIDEHRLNDAWKLHEQHMQMEGFLRKSVVNKLLTSFVESFDVQWLERAYGLVE 155

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
             + K    L   +++  L L L +  + + A T+LR M++   FP    + +I  H   
Sbjct: 156 QAIEKSRQNLLEKETLIYLSLGLAKAGLPISASTVLRKMVEMEQFPPVAAWSAILAHMSQ 215

Query: 449 SENGTFIACDILEEICSL----RAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKG 616
           +  G ++A +++ EI  L    R   R  +   L   KP+   FN+ L  CL FG  RK 
Sbjct: 216 TAQGAYLAAELIIEIGYLFQDNRIDPRKKSNAPLIAMKPNTTAFNIALAGCLMFGTTRKA 275

Query: 617 LEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQ 796
            +++DMM R  + T D   L+ +A+IYE+N  R+EL  ++  +   +P +      +Q +
Sbjct: 276 EQLLDMMPRVGVKT-DANLLILMAQIYERNGRRDELRKLQR-YIDESPNL----SDIQFR 329

Query: 797 QFYSSLLRIYCDLDELDFASELVLELLKK 883
           QFY+ LL  +    +LD AS +VLE+L+K
Sbjct: 330 QFYNCLLTCHLKFRDLDAASNMVLEMLRK 358


>ref|XP_004301723.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g17616-like [Fragaria vesca subsp. vesca]
          Length = 741

 Score =  112 bits (279), Expect = 3e-22
 Identities = 82/286 (28%), Positives = 147/286 (51%), Gaps = 5/286 (1%)
 Frame = +2

Query: 89  SLKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPF-VGKMLLNIAYSADRKTLRKGLTVV 265
           ++   L  A+ +H     W  F   + + G+   F + K++  + YS+D   L+K   +V
Sbjct: 87  AMLKRLEVALKEHQVNEVWESFIDFKRLHGFPEGFLIHKLITELCYSSDPYWLQKACDLV 146

Query: 266 YSVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFV 445
              LR+R+  L S D ++ L LSL R  M   A  +LRLML++   P       + +H V
Sbjct: 147 LVNLRERSDVLQS-DILTKLSLSLARSQMPKPAMMILRLMLEKRNLPPMNVLCLVVLHLV 205

Query: 446 ASENGTFIACDILEEIC----SLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRK 613
            +E GT +A + L +IC    SLRAK   + K +    +P  ++FN+VL +C+ F +  K
Sbjct: 206 KTEIGTHLASNFLIQICDHFQSLRAKKSDHTKLL----QPDTMIFNLVLDACVRFKLALK 261

Query: 614 GLEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQC 793
           G +++++M  + +   D  +++ +A+I+E N  REE+ + K      +      +H    
Sbjct: 262 GQQIMELMSATGV-AADAHSIVIIARIHELNGQREEIKNYKCYIDQVSAPFVQHYH---- 316

Query: 794 QQFYSSLLRIYCDLDELDFASELVLELLKKQISKDYWKVEKEKHRN 931
            QFY SLL ++   +++  ASEL+L++   + S    + +K   R+
Sbjct: 317 -QFYDSLLSLHFKFNDVVAASELILQMCDDRKSLLIQRDKKNSQRS 361


>gb|EOX94696.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
           cacao]
          Length = 780

 Score =  111 bits (277), Expect = 6e-22
 Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 5/269 (1%)
 Frame = +2

Query: 92  LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRP-FVGKMLLNIAYSADRKTLRKGLTVVY 268
           L  EL  AID+  +   W  + +   ++G+ R   V ++L   A S D + L K   +V 
Sbjct: 85  LNMELQNAIDERRYIDTWKLYEQHMQMEGFPRKSVVNRLLTGFAESLDVQWLEKAYGMVE 144

Query: 269 SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
               +    L   + +  L L+L +  + V A T+LR ++    FP T  + +I  H   
Sbjct: 145 QAFEESKQNLLEKEPLLYLSLALAKCGLSVPASTILRKLVATEQFPPTTAWSAILAHMSQ 204

Query: 449 SENGTFIACDILEEICSL----RAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKG 616
           +  G ++A +++ EI  L    R   R  +   L   KP+   F++ L  CL FG  RK 
Sbjct: 205 TAPGAYLASELILEIGYLFQDGRVDPRKKSNVPLIAMKPNATAFSIALAGCLLFGTTRKA 264

Query: 617 LEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQ 796
            +++DMM R  +   D   L+ +A IYE+N  REEL  +K           ++F     +
Sbjct: 265 EQLLDMMPRIGI-KADANLLIVMAHIYERNGRREELRKLKRHIDEACNLTDIQF-----R 318

Query: 797 QFYSSLLRIYCDLDELDFASELVLELLKK 883
           QFY+ LL  + +  +LD AS +VLE+L+K
Sbjct: 319 QFYNCLLTCHLNFGDLDSASNMVLEMLRK 347


>ref|XP_006385578.1| hypothetical protein POPTR_0003s08270g [Populus trichocarpa]
            gi|550342705|gb|ERP63375.1| hypothetical protein
            POPTR_0003s08270g [Populus trichocarpa]
          Length = 701

 Score =  110 bits (274), Expect = 1e-21
 Identities = 86/340 (25%), Positives = 165/340 (48%), Gaps = 15/340 (4%)
 Frame = +2

Query: 92   LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRPFVGKMLLN-IAYSADRKTLRKGLTVVY 268
            L  +L  A+ +H    AW  F   + + G+    +  ML++ ++YS+D   L+K   +V+
Sbjct: 74   LLRKLEIALREHQVDEAWVTFIDFKKLYGFPTGSMVNMLISRLSYSSDHHWLQKACDLVF 133

Query: 269  SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
             +L+++   L     ++ L +SL R  M V A  +LR+ML+    P      S+  H V 
Sbjct: 134  LILKEKP-GLLQFPVLTKLSISLARAQMPVPASMILRVMLERENMPPLTILWSVVSHMVK 192

Query: 449  SENGTFIACDILEEICSLRAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKGLEVV 628
            +E G  +A + L ++C     +        +  KP  ++FN+VL +C+ F    KG E+V
Sbjct: 193  TEIGACLASNFLVQMCDCFLHLSAKGSVRAKVVKPDAMIFNLVLDACVKFKSSLKGQEIV 252

Query: 629  DMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQQFYS 808
            ++M ++ +   D  +++  ++I+E N  R+E+  +K        G P  F    C QFY 
Sbjct: 253  ELMSKAGVIA-DAHSVIIFSQIHEMNGQRDEIKKLKDHVDEV--GAP--FIGYYC-QFYD 306

Query: 809  SLLRIYCDLDELDFASELVLELLKKQISKDYWKVEKEKHR---------NRKWSRRVEKE 961
            SLL+++   D++D A++L+L++ K Q S    K+  ++ +         N K   +++  
Sbjct: 307  SLLKLHFKFDDIDSAAQLLLDMHKFQESVPNKKLRMDQEKRLLVPIGSNNLKTGLKIQVM 366

Query: 962  PA-----HVLPIKADKHLIRWRKWMFRPTDEVYAMISSRY 1066
            P       +L +K  + L+ +R      ++   A + + Y
Sbjct: 367  PELLQKDSILTVKHKQELVMFRSGKLLLSNRALAKLVNGY 406


>emb|CBI28722.3| unnamed protein product [Vitis vinifera]
          Length = 1361

 Score =  110 bits (274), Expect = 1e-21
 Identities = 81/269 (30%), Positives = 131/269 (48%), Gaps = 5/269 (1%)
 Frame = +2

Query: 92   LKSELLTAIDDHNHFTAWYCFTRLRNIDGYSRP-FVGKMLLNIAYSADRKTLRKGLTVVY 268
            L  EL  AID H +  AW  F +   ++G+ R   V  +L + + S D + L K   +V 
Sbjct: 666  LCEELENAIDGHRYSDAWKLFEQHMGMEGFPRKSIVNTVLTSFSESLDVQWLEKAYGLVE 725

Query: 269  SVLRKRACRLFSIDSVSLLCLSLCRHHMIVEAGTLLRLMLKEHLFPHTLTFRSIFMHFVA 448
                +    L   +++  +   L    + V A T+LR +++   FP    + +I  H   
Sbjct: 726  RAFAESKQNLLEKETLIYISFGLASCGLPVPASTVLRKLVEMEEFPPVSAWSAILAHMSQ 785

Query: 449  SENGTFIACDILEEICSL----RAKVRPNNKYVLERHKPSIVLFNMVLKSCLDFGMFRKG 616
            + +G ++A +++ EI  L    R   R  +   L   KP+   FN+ L  CL FG  RK 
Sbjct: 786  TASGAYLAAELILEIGYLFQDGRVDPRKKSNRPLLAMKPNTTAFNIALAGCLLFGTTRKA 845

Query: 617  LEVVDMMHRSKLFTPDVCTLLFVAKIYEKNCCREELIDMKSVFTSFTPGMPVKFHILQCQ 796
             +++DMM R  +  PDV  L+ +A IYE+N  RE+L  +K           ++F     +
Sbjct: 846  EKLLDMMPRVGV-KPDVNLLIIMAHIYERNGRREDLRKLKRHIDEAHNLSDIQF-----R 899

Query: 797  QFYSSLLRIYCDLDELDFASELVLELLKK 883
            QFY+ LL  +    +LD AS +VLE+L+K
Sbjct: 900  QFYNCLLTCHLKFGDLDSASHMVLEMLRK 928