BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00025924
         (1257 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   261   4e-67
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   259   2e-66
gb|AGW47867.1| polyprotein [Phaseolus vulgaris]                       258   5e-66
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         256   1e-65
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   256   1e-65
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]         256   2e-65
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   253   1e-64
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   250   2e-64
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza...   249   3e-64
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]           247   2e-63
gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   243   2e-62
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]   244   5e-62
emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]   243   1e-61
emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]   241   6e-61
emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]   233   2e-58
emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]   229   2e-57
emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]        229   2e-57
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   224   8e-56
gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]     224   8e-56
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         223   1e-55

>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  261 bits (667), Expect = 4e-67
 Identities = 157/416 (37%), Positives = 222/416 (53%), Gaps = 23/416 (5%)
 Frame = +3

Query: 75   INKKNMFLNLVYLGNNTNYLF-QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFID 251
            IN  N       LGN     F +   SRA K L+LIH+D+CGP   K+     YF+ FID
Sbjct: 495  INHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554

Query: 252  DFSRFCWIYLLRNKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKG 431
            DFSR  W+Y L+ K E  + F KF  +V+ E    I  +RSD G E+ S  F + CE  G
Sbjct: 555  DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNG 614

Query: 432  IKRKITIPYNPQ*NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKG 611
            I+R++T+P +PQ NGV ER NRT++E  R +L    L K  W EAV    Y+ N  P K 
Sbjct: 615  IRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674

Query: 612  LNIKSPMEV*YGVKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKL 791
            ++ K+P E   G KP +SH   FG     ++P EKR KLD+K++K IF+GY + +KGYKL
Sbjct: 675  VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKL 734

Query: 792  MDLD*KKIIISREVK-------DTKSNPCKDNYLTVSAISAPD-TKE---NHIPNGLRKQ 938
             + D KK IISR +        D  SN    N+        P+ T+E   +  P      
Sbjct: 735  YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTS 794

Query: 939  PLWYKLMMEEAERFVKGKNIE-----------VNLCCPIDLEIPKSPTEAIKK*HWKKAM 1085
            P   ++    +ER  + ++I+           + L C      P    EAI+K  W+ AM
Sbjct: 795  PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAM 854

Query: 1086 DEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            DEE+ +++  + W L  +P G K IG +W+Y  K    G +++YKARLV +G+SQ+
Sbjct: 855  DEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQR 910


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  259 bits (661), Expect = 2e-66
 Identities = 152/401 (37%), Positives = 212/401 (52%), Gaps = 8/401 (1%)
 Frame = +3

Query: 75   INKKNMFLNLVYLGNNTNYLF-QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFID 251
            IN  N       LG      F +   SRA K L+LIH+D+CGP   K+     YF+ FID
Sbjct: 495  INHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554

Query: 252  DFSRFCWIYLLRNKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKG 431
            DFSR  W+Y L+ K E  + F KF  +V+ E    I  +RSD G E+ S  F + CE  G
Sbjct: 555  DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614

Query: 432  IKRKITIPYNPQ*NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKG 611
            I+R++T+P +PQ NGV ER NRT++E  R +L    L K  W EAV    Y+ N  P K 
Sbjct: 615  IRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674

Query: 612  LNIKSPMEV*YGVKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKL 791
            ++ K+P E   G KP +SH   FG     ++P EKR KLD+K++K IF+GY + +KGYKL
Sbjct: 675  VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734

Query: 792  MDLD*KKIIISREVK-------DTKSNPCKDNYLTVSAISAPDTKENHIPNGLRKQPLWY 950
             + D KK IISR +        D  SN    N+        P+      P+     P   
Sbjct: 735  YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTS 794

Query: 951  KLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANMESKNVWRL 1130
                +  E+           C P+D +      EAI+K  W+ AMDEE+ +++  + W L
Sbjct: 795  PTSSQIEEK-----------CEPMDFQ------EAIEKKTWRNAMDEEIKSIQKNDTWEL 837

Query: 1131 EEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
              +P G K IG +W+Y  K    G +++YKARLV +G+SQ+
Sbjct: 838  TSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQR 878


>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
          Length = 1471

 Score =  258 bits (658), Expect = 5e-66
 Identities = 134/363 (36%), Positives = 208/363 (57%)
 Frame = +3

Query: 168  LDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KYVQNEK 347
            L+LIH+D+CGP   ++ +   YFITFIDDFSR  W+Y L+ K E  + F KF   V+   
Sbjct: 548  LELIHTDICGPITPESFSGKRYFITFIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVERTT 607

Query: 348  SEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEATRCLL 527
             ++I  +RSD G EY S  F E CE++GI+R +T PY PQ NGV ER NRT+++  R +L
Sbjct: 608  DKQIKAVRSDRGGEYTSTTFMEYCEEQGIRRFLTAPYTPQQNGVAERKNRTILDMVRSML 667

Query: 528  HDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETYLYYIP 707
                + K +W EAV    Y+ N  P+  L+ ++P E   G KP +SH   FG     ++P
Sbjct: 668  KSKKMPKEFWAEAVQCAIYVQNRCPHVKLDDQTPQEAWSGQKPTVSHLKVFGSVAYAHVP 727

Query: 708  KEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVKDTKSNPCKDNYLTVSAI 887
             ++R KL++K+K+ +F+GY   TKGYKL+D   KK+ +SR+V+  +++    N  +   I
Sbjct: 728  DQRRTKLEDKSKRYVFIGYDEKTKGYKLLDPISKKVTVSRDVQINEASEWDWNNSSEVMI 787

Query: 888  SAPDTKENHIPNGLRKQPLWYKLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK* 1067
               ++    I +         +     +   +     EV+L C +      S  EA++  
Sbjct: 788  EVGESSPTSINSETTDDEDEPRQPKIRSLHDLYDSTNEVHLVCLLADAENISFEEAVRDK 847

Query: 1068 HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFS 1247
             W+ AMDEE+  ++  N W L E+P+G + IG +W++  K+   G +++YKARLV +G+ 
Sbjct: 848  KWQTAMDEEIKAIDRNNTWELTELPEGSQPIGVKWIFKKKMNAQGEIERYKARLVAKGYK 907

Query: 1248 QKE 1256
            QKE
Sbjct: 908  QKE 910


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  256 bits (655), Expect = 1e-65
 Identities = 155/416 (37%), Positives = 221/416 (53%), Gaps = 23/416 (5%)
 Frame = +3

Query: 75   INKKNMFLNLVYLGNNTNYLF-QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFID 251
            IN  N       LG      F +   SRA K L+LIH+D+CGP   K+     YF+ FID
Sbjct: 495  INHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554

Query: 252  DFSRFCWIYLLRNKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKG 431
            DFSR  W+Y L+ K E  + F KF  +V+ E    I  +RSD G E+ S  F + CE  G
Sbjct: 555  DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614

Query: 432  IKRKITIPYNPQ*NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKG 611
            I+R++T+P +PQ NGV ER NRT++E  R +L    L K  W EAV    Y+ N  P K 
Sbjct: 615  IRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674

Query: 612  LNIKSPMEV*YGVKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKL 791
            ++ K+P E   G KP +SH   FG     ++P EKR KLD+K++K IF+GY + +KGYKL
Sbjct: 675  VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734

Query: 792  MDLD*KKIIISREVK-------DTKSNPCKDNYLTVSAISAPD-TKE---NHIPNGLRKQ 938
             + D KK IISR +        D  SN    N+        P+ T+E   +  P      
Sbjct: 735  YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTS 794

Query: 939  PLWYKLMMEEAERFVKGKNIE-----------VNLCCPIDLEIPKSPTEAIKK*HWKKAM 1085
            P   ++    +ER  + ++I+           + L C      P    +AI+K  W+ AM
Sbjct: 795  PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAM 854

Query: 1086 DEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            DEE+ +++  + W L  +P G K IG +W+Y  K    G +++YKARLV +G+SQ+
Sbjct: 855  DEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQR 910


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  256 bits (655), Expect = 1e-65
 Identities = 155/416 (37%), Positives = 221/416 (53%), Gaps = 23/416 (5%)
 Frame = +3

Query: 75   INKKNMFLNLVYLGNNTNYLF-QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFID 251
            IN  N       LG      F +   SRA K L+LIH+D+CGP   K+     YF+ FID
Sbjct: 495  INHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFID 554

Query: 252  DFSRFCWIYLLRNKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKG 431
            DFSR  W+Y L+ K E  + F KF  +V+ E    I  +RSD G E+ S  F + CE  G
Sbjct: 555  DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614

Query: 432  IKRKITIPYNPQ*NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKG 611
            I+R++T+P +PQ NGV ER NRT++E  R +L    L K  W EAV    Y+ N  P K 
Sbjct: 615  IRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674

Query: 612  LNIKSPMEV*YGVKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKL 791
            ++ K+P E   G KP +SH   FG     ++P EKR KLD+K++K IF+GY + +KGYKL
Sbjct: 675  VSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734

Query: 792  MDLD*KKIIISREVK-------DTKSNPCKDNYLTVSAISAPD-TKE---NHIPNGLRKQ 938
             + D KK IISR +        D  SN    N+        P+ T+E   +  P      
Sbjct: 735  YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTS 794

Query: 939  PLWYKLMMEEAERFVKGKNIE-----------VNLCCPIDLEIPKSPTEAIKK*HWKKAM 1085
            P   ++    +ER  + ++I+           + L C      P    +AI+K  W+ AM
Sbjct: 795  PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAM 854

Query: 1086 DEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            DEE+ +++  + W L  +P G K IG +W+Y  K    G +++YKARLV +G+SQ+
Sbjct: 855  DEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQR 910


>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
          Length = 623

 Score =  256 bits (653), Expect = 2e-65
 Identities = 147/389 (37%), Positives = 214/389 (55%), Gaps = 22/389 (5%)
 Frame = +3

Query: 153  RATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KY 332
            ++TK ++LIH+D+CGP   K+     YF+ FIDDFSR  W+Y L+ K E  + F KF  +
Sbjct: 19   KSTKTVELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAH 78

Query: 333  VQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEA 512
            V+ E    I  +RSD G E+ S  F + CE  GI+R++T+P +PQ NGV ER NRT++E 
Sbjct: 79   VEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEM 138

Query: 513  TRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETY 692
             R +L    L K  W EAV    Y+ N  P K ++ K+P E   G KP +SH   FG   
Sbjct: 139  ARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIA 198

Query: 693  LYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVK-------DTKSN 851
              ++P EKR KLD+K++K IF+GY + +KGYKL + D KK IISR +        D  SN
Sbjct: 199  HAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSN 258

Query: 852  PCKDNYLTVSAISAPD-TKE---NHIPNGLRKQPLWYKLMMEEAERFVKGKNIE------ 1001
                N+        P+ T+E   +  P      P   ++    +ER  + ++I+      
Sbjct: 259  EEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVT 318

Query: 1002 -----VNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGC 1166
                 + L C      P    EAI+K  W+ AMDEE+ +++  + W L  +P G K IG 
Sbjct: 319  ENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGV 378

Query: 1167 RWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            +W+Y  K    G +++YKARLV +G+SQ+
Sbjct: 379  KWVYKAKKNSKGEVERYKARLVAKGYSQR 407


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  253 bits (646), Expect = 1e-64
 Identities = 154/416 (37%), Positives = 219/416 (52%), Gaps = 23/416 (5%)
 Frame = +3

Query: 75   INKKNMFLNLVYLGNNTNYLF-QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFID 251
            IN  N       LG      F +   SRA K L+LIH+D+CGP   K+     YF+ FID
Sbjct: 495  INHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFID 554

Query: 252  DFSRFCWIYLLRNKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKG 431
            DFSR  W+Y L+ K E  + F KF  +V+ E    I  +RSD G E+ S  F + CE  G
Sbjct: 555  DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614

Query: 432  IKRKITIPYNPQ*NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKG 611
            I+R++T+P +PQ NGV ER NRT++E  R +L    L K  W EAV    Y+ N  P K 
Sbjct: 615  IRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKS 674

Query: 612  LNIKSPMEV*YGVKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKL 791
            ++ K+P E   G K  +SH   FG     ++P EKR KLD+K++K IF+GY + +KGYKL
Sbjct: 675  VSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKL 734

Query: 792  MDLD*KKIIISREVK-------DTKSNPCKDNYLTVSAISAPD-TKE---NHIPNGLRKQ 938
             + D KK IISR +        D  SN    N+        P+ T+E   +  P      
Sbjct: 735  YNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTS 794

Query: 939  PLWYKLMMEEAERFVKGKNIE-----------VNLCCPIDLEIPKSPTEAIKK*HWKKAM 1085
            P   ++    +ER  + ++I+           + L C      P    EAI+K  W+ AM
Sbjct: 795  PTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAM 854

Query: 1086 DEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            DEE+ +++  + W L  +P G K IG +W+Y  K    G +++YKARLV +G+ Q+
Sbjct: 855  DEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQR 910


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  250 bits (638), Expect(2) = 2e-64
 Identities = 150/408 (36%), Positives = 214/408 (52%), Gaps = 41/408 (10%)
 Frame = +3

Query: 153  RATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KY 332
            RA+  L+L+H+D+ G     +     YFITFIDD++R  W+Y L+ K   L+ F KF   
Sbjct: 512  RASAPLELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAM 571

Query: 333  VQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEA 512
            V+N+ + KI  LRSD G EY S  F++ CE  GI+R++T  Y+ Q NGV ER NRT+ + 
Sbjct: 572  VENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDM 631

Query: 513  TRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETY 692
               +L D  + KS+W EAV T  YI N  P K +  ++P E  YG KP I H   FG   
Sbjct: 632  ANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCIC 691

Query: 693  LYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISR--------------- 827
               +P +KR K D K+ + IF+GY  G KGY+L +L+ KKIIISR               
Sbjct: 692  YAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIISRDAIFDESATWNWKSP 751

Query: 828  ------------------------EVKDTKSNPCKDNYLTVSAISAPD--TKENHIPNGL 929
                                    EV+D   +P   + ++ S+ S+    + E  I    
Sbjct: 752  EASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQISTP- 810

Query: 930  RKQPLWYKLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANME 1109
               P   + M+E  E   + +  E +  C   +  P+S  EA K  +W KAM++E+  +E
Sbjct: 811  ESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIE 870

Query: 1110 SKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
              N W L + P+ ++ IG +W+Y  KL PDGS+ KYKARLV +GF QK
Sbjct: 871  KNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQK 918



 Score = 24.3 bits (51), Expect(2) = 2e-64
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 98  ESCVFGKQHKLPFPN 142
           E CVFGKQ +  FP+
Sbjct: 493 EGCVFGKQIRASFPH 507


>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
            gi|31429795|gb|AAP51797.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1350

 Score =  249 bits (637), Expect(2) = 3e-64
 Identities = 151/408 (37%), Positives = 214/408 (52%), Gaps = 41/408 (10%)
 Frame = +3

Query: 153  RATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KY 332
            RA+  L+L+H+D+ G     +     YFITFIDD++R  W+Y L+ K   L+ F KF   
Sbjct: 435  RASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAM 494

Query: 333  VQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEA 512
            V+N+ + KI  LRSD G EY S  F++ CE  GI+R++T  Y+ Q NGV ER NRT+ + 
Sbjct: 495  VENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQQNGVAERKNRTINDM 554

Query: 513  TRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETY 692
               +L D  + KS+W EAV T  YI N  P K +  ++P E  YG KP I H   FG   
Sbjct: 555  ANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCIC 614

Query: 693  LYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISRE-------------- 830
               +P +KR K D K+   IF+GY  G KGY+L +L+ KKIIISR+              
Sbjct: 615  YAQVPAQKRVKFDNKSDWCIFVGYADGIKGYRLYNLEKKKIIISRDVIFDESATWNWKSP 674

Query: 831  -------------------------VKDTKSNPCKDNYLTVSAISAPD--TKENHIPNGL 929
                                     V+D  S+P   + ++ S+ S+    + E  I    
Sbjct: 675  EASSTPLLPTTTITLGQPHMHGTHGVEDHTSSPQSSSPMSSSSASSDSSPSSEEQISTP- 733

Query: 930  RKQPLWYKLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANME 1109
               P   + M+E  E   + +  E +  C   +  P+S  EA K  +W KAM++E+  +E
Sbjct: 734  ESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMIE 793

Query: 1110 SKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
              N W L + P+ +K IG +W+Y  KL PDGS+ KYKARLV +GF QK
Sbjct: 794  KNNTWELVDRPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQK 841



 Score = 24.3 bits (51), Expect(2) = 3e-64
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 98  ESCVFGKQHKLPFPN 142
           E CVFGKQ +  FP+
Sbjct: 416 EGCVFGKQIRASFPH 430


>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
          Length = 1314

 Score =  247 bits (630), Expect(2) = 2e-63
 Identities = 149/409 (36%), Positives = 212/409 (51%), Gaps = 42/409 (10%)
 Frame = +3

Query: 153  RATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KY 332
            RA+   +L+H+D+ G     +     YFITFIDD++R  W+Y L+ K   L+TF KF   
Sbjct: 519  RASAPFELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVYFLKEKSAALETFKKFKVM 578

Query: 333  VQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEA 512
            V+N+ + KI  LRSD G EY S  F++ CE  GI+R++T  Y+ Q NGV ER NRT+ + 
Sbjct: 579  VENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGYSAQQNGVAERKNRTINDM 638

Query: 513  TRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETY 692
               +L D  + KS+W EAV T  YI N  P K +  ++P E  YG KP I H   F    
Sbjct: 639  ANSMLQDKGMPKSFWAEAVNTAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFACIC 698

Query: 693  LYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVKDTKSNPCKDNYL 872
               +P +KR K D K+ + IF+GY  G KGY+L +L+ KKIIISR+V   +S     N+ 
Sbjct: 699  YAQVPAQKRVKFDNKSNRCIFVGYADGIKGYRLYNLEKKKIIISRDVFFDES--ATWNWK 756

Query: 873  TVSAISAP-----------------DTKENHIPNGLRKQPL------------------- 944
            +  A S P                    E+H P+     P+                   
Sbjct: 757  SPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQIST 816

Query: 945  ------WYKLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANM 1106
                    + M+E  E   + +  E +  C   +  P+S  EA K  +W KAM++E+  +
Sbjct: 817  PESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMI 876

Query: 1107 ESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            E  N W   + P+ ++ IG +W+Y  KL PDGS+ KYKARLV +GF QK
Sbjct: 877  EKNNTWEFVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQK 925



 Score = 23.9 bits (50), Expect(2) = 2e-63
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 98  ESCVFGKQHKLPFPN 142
           E CVFGKQ +  FP+
Sbjct: 500 EGCVFGKQIQASFPH 514


>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  243 bits (620), Expect(2) = 2e-62
 Identities = 149/409 (36%), Positives = 212/409 (51%), Gaps = 42/409 (10%)
 Frame = +3

Query: 153  RATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KY 332
            RA+  L+L+H+D+ G     +     YFITFIDD++R  W+Y L+ K   L+ F KF   
Sbjct: 302  RASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEKSAALEIFKKFKAM 361

Query: 333  VQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEA 512
            V+N+ + KI  LRSD G EY S  F++ CE  GI+R++T  Y+ Q NGV ER NRT+ + 
Sbjct: 362  VENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSTQQNGVAERKNRTINDM 421

Query: 513  TRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETY 692
               +L D  + KS+W EAV T  YI N  P K +  ++P E  YG KP I H   FG   
Sbjct: 422  ANSMLQDKGMPKSFWAEAVNTAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCIC 481

Query: 693  LYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVKDTKSNPCKDNYL 872
               +P +KR K D K+ + IF+GY  G KGY+L +L+ KKIII R+V   +S     N+ 
Sbjct: 482  YAQVPAQKRVKFDNKSDRCIFVGYADGIKGYRLYNLEKKKIIIIRDVIFDES--ATWNWK 539

Query: 873  TVSAISAP-----------------DTKENHIPNGLRKQPL------------------- 944
            +  A S P                    E+H P+     P+                   
Sbjct: 540  SPEASSTPLLPTTTITLGQPHMHGTHEVEDHTPSPQPSSPMSSSSASSDSSPSSEEQIST 599

Query: 945  ------WYKLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANM 1106
                    + M+E  E   + +  E +  C   +  P+S  EA K  +W KAM++E+  +
Sbjct: 600  PESAPRRVRSMVELLESTSQQRGSEQHEFCNYSVVEPQSFQEAEKHDNWIKAMEDEIHMI 659

Query: 1107 ESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
            E  N W L + P+ ++ IG +W+Y  KL  DGS+ KYKARLV +GF QK
Sbjct: 660  EKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQK 708



 Score = 24.3 bits (51), Expect(2) = 2e-62
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 98  ESCVFGKQHKLPFPN 142
           E CVFGKQ +  FP+
Sbjct: 283 EGCVFGKQIRASFPH 297


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score =  244 bits (623), Expect = 5e-62
 Identities = 149/393 (37%), Positives = 212/393 (53%), Gaps = 12/393 (3%)
 Frame = +3

Query: 111  LGNNTNYLF-QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLR 287
            +G    Y F + K  R  K L+L+HSD+CGP    ++    YFITFI D+S   W+Y L+
Sbjct: 465  VGKQHRYQFPKGKSWRXNKVLELVHSDICGPINPTSNGGKRYFITFIXDYSXKTWVYFLQ 524

Query: 288  NKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ 467
             K E   TF  F   V+ E  + I   RSD G EY S  F   CE  GI++++T  Y+PQ
Sbjct: 525  EKSEAFSTFKSFKMLVEKEAXKPIKIFRSDXGGEYTSQEFVNFCENHGIQKQLTAAYSPQ 584

Query: 468  *NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YG 647
             NG   R NRT++   R +L   ++ +S+W EAVI + +I N  P   +   +P E   G
Sbjct: 585  QNGXSXRKNRTILNMVRTILSKGHIPRSFWPEAVIWSIHILNRSPTLVVQNVTPXEAWNG 644

Query: 648  VKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISR 827
             KP ++HF  FG     +IP +KR+KLD+K +K IFLG    +K YKL +   KKI ISR
Sbjct: 645  RKPSVNHFRIFGCIAYAHIPXQKRKKLDDKGEKCIFLGVSEXSKAYKLYNPITKKIXISR 704

Query: 828  EVKDTKSNPCK-DNYLTVSAISAPDTKENHIPNGLRKQPLWYKLMMEEAERFVKGKNIEV 1004
            ++   + +  K D+  T   I A    EN      R+QPL  ++   E          E 
Sbjct: 705  DIIFDEGSFWKWDDNTTKQQIQABFDGENEEE---RQQPLQQQIPXAEIPPNEAPTTAET 761

Query: 1005 NLCCP-IDLEI---------PKSPTEAIKK*HWKKAMDEEMANMESKNVWRLEEIPKGKK 1154
            +   P  D ++         P +   A+K+  W+KAMD E+A +E  + W L E+PKG K
Sbjct: 762  SPTTPEFDEQVEAXVGXNCDPTTFESAVKESKWRKAMDAEIAAIERNDTWELSELPKGHK 821

Query: 1155 EIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
             IG +W+Y  KLK +G +DKYKARLV +G+ Q+
Sbjct: 822  TIGVKWVYKTKLKENGEVDKYKARLVAKGYKQE 854


>emb|CAN63536.1| hypothetical protein VITISV_002860 [Vitis vinifera]
          Length = 1041

 Score =  243 bits (620), Expect = 1e-61
 Identities = 154/407 (37%), Positives = 213/407 (52%), Gaps = 31/407 (7%)
 Frame = +3

Query: 126  NYLFQIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEEL 305
            N   Q+K  RA K L+L+HSD+CGP +  ++ S  Y ITFIDD+SR  W+Y L+ K E  
Sbjct: 285  NQFPQVKSWRAKKALELVHSDICGPIIPNSNGSKRYIITFIDDYSRKIWVYFLQEKSEAF 344

Query: 306  QTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFE 485
              F  +   V+ E    I   R D G EYNS  F   CE  GI+R++T  Y PQ NGV E
Sbjct: 345  VAFKSYKALVEKEVGNPIKFFRMDRGGEYNSHEFANFCENHGIRRQLTATYIPQQNGVCE 404

Query: 486  RGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDIS 665
            R N T++   R LL  S + KS+W EAV  + +I N  P   +   +P E   G K  ++
Sbjct: 405  RKNSTIMNMVRSLLTTSGIPKSFWLEAVNWSIHILNRSPTLVVQNMTPKEAWSGRKLVVN 464

Query: 666  HFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREV---- 833
            HF  FG     YIP EKRRKLD K +K IFLG     K YKL +    KI++SR+V    
Sbjct: 465  HFRIFGCIAYAYIPDEKRRKLDNKGEKCIFLGVSDKLKAYKLYNPSTMKIVLSRDVVFDE 524

Query: 834  KDT---KSNPCKDNY-----------------------LTVSAI-SAPDTKENHIPNGLR 932
            KDT   K N  K+N                          V  +  +P   E+  P  +R
Sbjct: 525  KDTWSWKQNGVKENIPVDFDDDEKWQQPMENEQEEEVTQNVPIVDQSPLATESQRPQRVR 584

Query: 933  KQPLWYKLMMEEAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANMES 1112
            K+P W  +   E     +G++         D ++    T A+K+  W+KAMD E+A +E 
Sbjct: 585  KRPAW--MTNHEVTGVDQGEDPLTYFAMFSDCDLIIFET-AVKEPKWRKAMDAEIAAIER 641

Query: 1113 KNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
             + W L ++PKG+K IG +W+Y  KLK +G +DK+KA LV +G+ Q+
Sbjct: 642  NDTWELCDLPKGQKTIGVKWVYKTKLKENGEVDKHKACLVAKGYKQE 688


>emb|CAN74029.1| hypothetical protein VITISV_013540 [Vitis vinifera]
          Length = 894

 Score =  241 bits (614), Expect = 6e-61
 Identities = 138/396 (34%), Positives = 208/396 (52%), Gaps = 11/396 (2%)
 Frame = +3

Query: 99   NLVYLGN--NTNYLFQIKDSRATKFLDLIHSDLCGPKLVKTHT-------SYIYFITFID 251
            NL+ +G      Y  Q KD++   F       LC     K+          Y Y     +
Sbjct: 58   NLLSVGQMLEKQYFLQFKDNQCVIFDPYGEKLLCMKMKSKSFAINWENAAEYAYAGVTQN 117

Query: 252  DFSRFCWIYLLRNKKEELQTFIKF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKG 431
            D++R CW+Y ++ K E    F +F   V+N+ +  I  LRSD GTEY S  F E C   G
Sbjct: 118  DYTRMCWVYFIKLKNEVFSVFKQFKALVENQSNLSIKILRSDNGTEYTSSQFVEFCSTAG 177

Query: 432  IKRKITIPYNPQ*NGVFERGNRTLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKG 611
            I+ ++T PY PQ NGV ER NRT++E  RCLL +  +  ++W EAV T+ Y+ N  P K 
Sbjct: 178  IECQLTTPYTPQQNGVSERKNRTVMEMARCLLFEKKMPSNFWAEAVNTSVYLLNRLPTKS 237

Query: 612  LNIKSPMEV*YGVKPDISHFLEFGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKL 791
            L  K+P E  YGVKP ++H   FG    Y++P+ KR KLD +A+KGI +GY + TKGY++
Sbjct: 238  LKNKTPYEEWYGVKPFVNHLKIFGSICYYHVPEPKRSKLDSRAQKGILIGYGTSTKGYRI 297

Query: 792  MDLD*KKIIISREVK--DTKSNPCKDNYLTVSAISAPDTKENHIPNGLRKQPLWYKLMME 965
              L   K+++SR VK  +  +  CK+     S +   + ++      +   P+     +E
Sbjct: 298  FCLQTNKVVLSRNVKVDEMATWDCKNKKYAQSDVDFNNHEDFQTSKSVDDFPVRGIRSLE 357

Query: 966  EAERFVKGKNIEVNLCCPIDLEIPKSPTEAIKK*HWKKAMDEEMANMESKNVWRLEEIPK 1145
                       ++   C + +  P S  EA     W++AM EE+  +     W+L E PK
Sbjct: 358  -----------DIYQRCSLAITEPTSYVEAKDSEAWRRAMQEELKMINKNETWQLVERPK 406

Query: 1146 GKKEIGCRWLYTIKLKPDGSLDKYKARLVVQGFSQK 1253
              K IG +W++  KL  DGS+ K+KA+LVV+G++Q+
Sbjct: 407  NHKVIGVKWVFKTKLNSDGSICKHKAKLVVKGYAQQ 442


>emb|CAN71037.1| hypothetical protein VITISV_011061 [Vitis vinifera]
          Length = 1220

 Score =  233 bits (593), Expect = 2e-58
 Identities = 134/373 (35%), Positives = 201/373 (53%), Gaps = 2/373 (0%)
 Frame = +3

Query: 138  QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFI 317
            Q    RAT  L+LIHS +CGP  + + ++ +YF  FIDD SR  W+Y L+ K + L  F 
Sbjct: 485  QNMSKRATHELELIHSYICGPMSIASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSMFK 544

Query: 318  KF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNR 497
             F K V+ +  + +  L  D G EY S  F            +T PY PQ N V ER N+
Sbjct: 545  SFKKMVETQSGQNVKVLIIDNGGEYISKEFN-----------LTAPYLPQQNEVSERKNK 593

Query: 498  TLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLE 677
            T++E  RC+L +  L K  W EAV T+ Y+ N  P K +  K+P+E  +GVKP + H   
Sbjct: 594  TVMEMARCMLFEKRLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWFGVKPSVKHLKV 653

Query: 678  FGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVKDTKSNPC 857
            FG     ++P  KR KLDE+A+KG+F+GY + +KGY++  L   KI+ISR+V   +++  
Sbjct: 654  FGSLCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVISRDVHFDENSYW 713

Query: 858  KDNYLTVSAI--SAPDTKENHIPNGLRKQPLWYKLMMEEAERFVKGKNIEVNLCCPIDLE 1031
              +   V     + P   E  I + + + PL  +   +     ++  +     C  +  E
Sbjct: 714  NWDLKKVHKCDQNTPSILEPAIESIIIEGPLDVEATSDTPMLKMRPLSDVYERCNLVHAE 773

Query: 1032 IPKSPTEAIKK*HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLD 1211
             P   TEA +   W KAM  E+  +E    W+L E+P+ K  IG +W++  K   DGS+ 
Sbjct: 774  -PTCYTEAARFLEWIKAMKAEIDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIF 832

Query: 1212 KYKARLVVQGFSQ 1250
            ++KARLVV+GF+Q
Sbjct: 833  RHKARLVVKGFAQ 845


>emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]
          Length = 1291

 Score =  229 bits (584), Expect = 2e-57
 Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 2/373 (0%)
 Frame = +3

Query: 138  QIKDSRATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFI 317
            Q    RAT  L+LIHSD+CGP    + ++ +YF  FIDDFSR  W+Y L+ K + L  F 
Sbjct: 509  QNMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFK 568

Query: 318  KF*KYVQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNR 497
             F K V+ +  + +      G +E              +  ++T PY+PQ NGV ER NR
Sbjct: 569  SFKKMVETQSGQNV-----KGASE--------------LIMELTTPYSPQQNGVSERKNR 609

Query: 498  TLVEATRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLE 677
            T++E  RC+L +  L K  W EAV T+ Y+ N  P K +  K+P+E   GVKP + H   
Sbjct: 610  TVMEMARCMLFEKKLPKLLWAEAVNTSVYLLNRLPTKSVQSKTPIEAWSGVKPSVKHLKV 669

Query: 678  FGETYLYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVKDTKSNPC 857
            FG     ++P  KR KLDE+A+KG+F+GY + +KGY++  L   KI+ISR+V   +++  
Sbjct: 670  FGSFCYLHVPSVKRGKLDERAEKGVFVGYAAESKGYRIYSLSRMKIVISRDVHFDENSYW 729

Query: 858  KDNYLTVSAI--SAPDTKENHIPNGLRKQPLWYKLMMEEAERFVKGKNIEVNLCCPIDLE 1031
              +   V     + P   E  I + + + PL  +   +     ++  +     C  +  E
Sbjct: 730  NWDLKKVHKCDQTTPSILEPAIESTIIEGPLDVEATSDTPVLKMRPLSDVYERCNLVHAE 789

Query: 1032 IPKSPTEAIKK*HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYTIKLKPDGSLD 1211
             P   TEA +   W +AM  E+  +E    W+L E+P+ K  IG +W++  K   DGS+ 
Sbjct: 790  -PTCYTEAARFLEWIEAMKAEIDAIERNGTWKLTELPEAKNAIGVKWVFRTKFNSDGSIF 848

Query: 1212 KYKARLVVQGFSQ 1250
            ++KARLVV+GF+Q
Sbjct: 849  RHKARLVVKGFAQ 861


>emb|CAX68207.1| Copia-like retrotransposon [Helianthus annuus]
          Length = 1358

 Score =  229 bits (583), Expect = 2e-57
 Identities = 140/385 (36%), Positives = 216/385 (56%), Gaps = 17/385 (4%)
 Frame = +3

Query: 153  RATKFLDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KY 332
            R T  L+LIHSD+C    V T     YFI+F DD SR+ ++YLL +K E  + F  +   
Sbjct: 545  RNTSLLELIHSDICELNGVLTRGGKRYFISFCDDSSRYLYVYLLHSKDEAFEAFKIYKAE 604

Query: 333  VQNEKSEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEA 512
            V+ +K ++I  LRSD G EY +  F   CE++GI  + T PY PQ NG+ ER NRTLVE 
Sbjct: 605  VEKQKEKRIKILRSDRGGEYFNRRFDAFCEEEGIIHERTAPYTPQQNGLAERKNRTLVEM 664

Query: 513  TRCLLHDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETY 692
              C+L+ S L ++ W EAV+T  Y+ N   ++ +   SP E+  G KP++ H   +G   
Sbjct: 665  ANCMLNQSGLPRNMWGEAVLTACYVHNRITSRVIP-TSPYELWKGRKPNLEHLRVWGCLA 723

Query: 693  LYYIPKEKRRKLDEKAKKGIFLGYPSGTKGYKLMDLD*KKIIISREVKDTKSNPCKD--- 863
             Y +P  K  KL E+A K +F+GY S +K Y+L+D +   ++ SR+V+  ++   +D   
Sbjct: 724  YYRVPDPKTLKLGERAFKSVFIGYASHSKSYRLLDDESGIVVESRDVEFFENKFSRDDEN 783

Query: 864  -NYLTVSAIS------APDTKENHIPNGLRKQPLW----YKLMMEEAERFVKGKNIEVNL 1010
             N  T S+ S      +P  +E      +RK+  +    +  ++E  ++ V     EV  
Sbjct: 784  SNGTTTSSTSEKRVQPSPIVEEPRKSTRVRKEKSYGDDFFSYLVEGTQKKVMR---EVIF 840

Query: 1011 CCPIDLEIPKSPTEAIKK*H---WKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYT 1181
               +D + PK+  EA+       WK+A+++EM ++     W L ++PKGKK IG +W++ 
Sbjct: 841  AVNLD-DDPKTFNEAMSSRDAPLWKEAVNDEMDSIMGNGTWELADLPKGKKPIGSKWIFK 899

Query: 1182 IKLKPDGSLDKYKARLVVQGFSQKE 1256
             K  PDGS+  YKARLV +G+ Q+E
Sbjct: 900  RKYHPDGSISAYKARLVAKGYRQRE 924


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  224 bits (570), Expect = 8e-56
 Identities = 138/384 (35%), Positives = 215/384 (55%), Gaps = 21/384 (5%)
 Frame = +3

Query: 168  LDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KYVQNEK 347
            L+L+HSDLC    V T     YF+TFIDD +RFC++YLL+ K E L  F  +   V+N+ 
Sbjct: 451  LELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 510

Query: 348  SEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEATRCLL 527
              KI  LRSD G E+ S  F   CE+ GI  ++T PY+P+ NG+ ER NRTL +    +L
Sbjct: 511  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAML 570

Query: 528  HDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETYLYYIP 707
              + L K+WW EA++T+N++ N  PN+  + K+P E+  G KP +S+   +G      +P
Sbjct: 571  DTAGLPKAWWGEALLTSNHVLNRVPNRNKD-KTPYEIWIGRKPSLSYLRTWGCLAKVNVP 629

Query: 708  KEKRRKLDEKAKKGIFLGYPSGTKGYKLM-------DLD*KKIIISRE---------VKD 839
              K+RKL  K    +FLGY   +  Y+ +       D+    I+ SR+         +KD
Sbjct: 630  ITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAIFFESFFPMKD 689

Query: 840  TKSNPCKDNYLTVSAISAPDTKENHIPNGLRKQPLWYKLMMEEAERFVK--GKNIEVNLC 1013
            T S   + + +  S+I+ P+  E H    + ++ +       + +R  K  G +  V L 
Sbjct: 690  THSGSNQPSEIIPSSITPPEQTE-HTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYL- 747

Query: 1014 CPIDLEIPKSPTEAIKK---*HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYTI 1184
              +D + PKS +EA       +WK+A+  EM ++ +   W + E P G K +GC+W++  
Sbjct: 748  --VD-DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 804

Query: 1185 KLKPDGSLDKYKARLVVQGFSQKE 1256
            KL+PDG+++KYKARLV +G++QKE
Sbjct: 805  KLRPDGTIEKYKARLVAKGYTQKE 828


>gb|AAT93941.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1433

 Score =  224 bits (570), Expect = 8e-56
 Identities = 135/384 (35%), Positives = 214/384 (55%), Gaps = 21/384 (5%)
 Frame = +3

Query: 168  LDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KYVQNEK 347
            L+L+HSDLC    V T     YF+T IDD +RFC++YLL+ K E L  F  +   V+N+ 
Sbjct: 490  LELLHSDLCEMNGVLTKGEKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 348  SEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEATRCLL 527
              KI  LRSD G E+ S  F   CE+ GI  + T PY+P+ NG+ ER NRTL +    +L
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 528  HDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETYLYYIP 707
              + L K+WW EA++T+N++ N  PN+  + K+P E+  G KP +S+   +G      +P
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKD-KTPYEIWIGRKPSLSYLRTWGCLAKVNVP 668

Query: 708  KEKRRKLDEKAKKGIFLGYPSGTKGYK-------LMDLD*KKIIISRE---------VKD 839
              K+RKL  K    +FLGY   +  Y+       ++D+    I+ SR+         +KD
Sbjct: 669  ITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIMESRDATFFESFFPMKD 728

Query: 840  TKSNPCKDNYLTVSAISAPDTKENHIPNGLRKQPLWYKLMMEE--AERFVKGKNIEVNLC 1013
            T S   + + + +S+I+ P+  E+            ++L+ EE  +E   + K +  +  
Sbjct: 729  THSGSNQPSEIILSSITPPEQTEH-----------THELVSEEDVSEALRRSKRLGDDFT 777

Query: 1014 CPIDLEIPKSPTEAIKK---*HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYTI 1184
              +  + PKS +EA       +WK+A+  EM ++ +   W + E P G K +GC+W++  
Sbjct: 778  VYLVDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 837

Query: 1185 KLKPDGSLDKYKARLVVQGFSQKE 1256
            KL+PDG+++KYKARLV +G++QKE
Sbjct: 838  KLRPDGTIEKYKARLVAKGYTQKE 861


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  223 bits (568), Expect = 1e-55
 Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 21/384 (5%)
 Frame = +3

Query: 168  LDLIHSDLCGPKLVKTHTSYIYFITFIDDFSRFCWIYLLRNKKEELQTFIKF*KYVQNEK 347
            L+L+HSDLC    V T     YF+TFIDD +RFC++YLL+ K E L  F  +   V+N+ 
Sbjct: 490  LELLHSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQL 549

Query: 348  SEKIGCLRSDGGTEYNSIIFKEICEKKGIKRKITIPYNPQ*NGVFERGNRTLVEATRCLL 527
              KI  LRSD G E+ S  F   CE+ GI  + T PY+P+ NG+ ER NRTL +    +L
Sbjct: 550  DRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAML 609

Query: 528  HDSNLEKSWWREAVITTNYITNHWPNKGLNIKSPMEV*YGVKPDISHFLEFGETYLYYIP 707
              + L K+WW EA++T+N++ N  PN+  + K+P E+  G KP +S+   +G      +P
Sbjct: 610  DTAGLPKAWWGEALLTSNHVLNRVPNRNKD-KTPYEIWIGRKPSLSYLRIWGCLAKVNVP 668

Query: 708  KEKRRKLDEKAKKGIFLGYPSGTKGYK-------LMDLD*KKIIISRE---------VKD 839
              K+RKL  K    +FLGY   +  Y+       ++D+    II SR+         +KD
Sbjct: 669  ITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKD 728

Query: 840  TKSNPCKDNYLTVSAISAPDTKENHIPNGLRKQPLWYKLMMEEAERFVK--GKNIEVNLC 1013
            T S   + + +  S+I+ P+  E H    + ++ +       + +R  K  G +  V L 
Sbjct: 729  THSGSNQPSEIIPSSITPPEQTE-HTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYL- 786

Query: 1014 CPIDLEIPKSPTEAIKK---*HWKKAMDEEMANMESKNVWRLEEIPKGKKEIGCRWLYTI 1184
              +D + PKS +EA       +WK+A+  EM ++ +   W + E P G K +GC+W++  
Sbjct: 787  --VD-DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKK 843

Query: 1185 KLKPDGSLDKYKARLVVQGFSQKE 1256
            KL+PDG+++KYKARLV +G++QKE
Sbjct: 844  KLRPDGTIEKYKARLVAKGYTQKE 867