BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00025921
         (589 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein A...    62   1e-07
ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein A...    62   1e-07
ref|XP_006365287.1| PREDICTED: uncharacterized protein LOC102597...    58   2e-06
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    57   4e-06
gb|EEE61501.1| hypothetical protein OsJ_15790 [Oryza sativa Japo...    57   5e-06
gb|EEE57924.1| hypothetical protein OsJ_08622 [Oryza sativa Japo...    56   8e-06

>ref|XP_006347119.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 450

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
 Frame = +1

Query: 163 KRIWKNLALPH-VKISLWLLHYHALATTECLEHRGIMIPPGCALCQVALES*QHMFFECE 339
           K++WK   +PH V   +WLL   A  T + +  RGI +   C LC   LE+  H+F  C+
Sbjct: 289 KQVWK-CRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGETLETVNHLFLHCK 347

Query: 340 YLKE--------------VPARAKGHVGSL-SMNFLALRQCDLSVI-ADVWWSVWEERRC 471
           Y ++              +P R    + S      LA  +    +I A +WW++W+ER  
Sbjct: 348 YTRQLWRIFLSLKGISWTMPRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNS 407

Query: 472 RCFGGASVSASNLSWEVLL 528
           RCF G   S  ++    +L
Sbjct: 408 RCFEGIENSVQDVKLNCIL 426


>ref|XP_006337991.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
           tuberosum]
          Length = 556

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
 Frame = +1

Query: 163 KRIWKNLALPH-VKISLWLLHYHALATTECLEHRGIMIPPGCALCQVALES*QHMFFECE 339
           K++WK   +PH V   +WLL   A  T + +  RGI +   C LC   LE+  H+F  C+
Sbjct: 395 KQVWK-CRIPHKVSCFIWLLAKEAALTQDNVMKRGITLCSRCFLCGETLETVNHLFLHCK 453

Query: 340 YLKE--------------VPARAKGHVGSL-SMNFLALRQCDLSVI-ADVWWSVWEERRC 471
           Y ++              +P R    + S      LA  +    +I A +WW++W+ER  
Sbjct: 454 YTRQLWRIFLSLKGISWTMPRRVTEALYSWEEAGALAKDRTRWRIIPASIWWAIWKERNS 513

Query: 472 RCFGGASVSASNLSWEVLL 528
           RCF G   S  ++    +L
Sbjct: 514 RCFEGIENSVQDVKLNCIL 532


>ref|XP_006365287.1| PREDICTED: uncharacterized protein LOC102597191 [Solanum tuberosum]
          Length = 305

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
 Frame = +1

Query: 163 KRIWKNLALPHVKISLWLLHYHALATTECLEHRGIMIPPGCALCQVALES*QHMFFECEY 342
           K IW+    P V    W+  Y A  T + ++ R I  P  C +C+   E+ +H+   CE 
Sbjct: 141 KLIWRTKLPPKVVFFTWIALYEACLTQDNIKKRKIQFPNRCYMCKKEAETPRHLLLHCEV 200

Query: 343 LKEV--------------PARAKGHVGSLSMNFL--ALRQCDLSVIADVWWSVWEERRCR 474
             E+              P   K    S S+  +  A+++  + + A ++WS+W ER  R
Sbjct: 201 ASELWSMFFCLSGINWTTPLTVKDAYESWSLWKVDKAIKKIWIMIPACIFWSIWLERNKR 260

Query: 475 CFGGASVS 498
           CF G S +
Sbjct: 261 CFDGESTA 268


>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
 Frame = +1

Query: 157  LVKRIWKNLALPHVKISLWLLHYHALATTECLEHRGIMIPPGCALCQVALES*QHMFFEC 336
            L  ++W    +P +K+ +W     ALA  + L  RGI    GC  C+  +E+  H+ F+C
Sbjct: 994  LFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQC 1053

Query: 337  EYLKEV--------PARAKG--------HVGSLSMNFLALRQCDLSVIADVWWSVWEERR 468
             + ++V        PA   G        HV   S NF   R    +V   + W +W+ R 
Sbjct: 1054 PFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHM-RTVSPWLLWEIWKNRN 1112

Query: 469  CRCFGGASVSASNL 510
               F G  +++S +
Sbjct: 1113 KTLFQGTGLTSSEI 1126


>gb|EEE61501.1| hypothetical protein OsJ_15790 [Oryza sativa Japonica Group]
          Length = 285

 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
 Frame = +1

Query: 154 CLV-KRIWKNLALPHVKISLWLLHYHALATTECLEHRGIMIPPGCALCQVALES*QHMFF 330
           CL+ K IWK+ A    K  ++    +A  T + L+ RG  + P C LC   +ES  H+F 
Sbjct: 130 CLLGKIIWKSRAPERCKFFMFCAMKNACLTADNLQRRGWHLAPICHLCSKDIESCTHIFL 189

Query: 331 ECEYLKEVPARAKGHVG--------SLSMNFLALRQC---------DLSVIADVWWSVWE 459
            C + +EV    +G +G         L   + A R+          D  VI  V W +W+
Sbjct: 190 NCAFSREVWGLVRGRIGFLHAVPDDDLPTWWCAARKVVTKRERKTFDAGVIL-VTWLIWK 248

Query: 460 ERRCRCFGGASVSASNL------SWEVLL 528
           ER  R F G + S + L       WE  L
Sbjct: 249 ERNARVFDGRASSPACLFATIKDEWETWL 277


>gb|EEE57924.1| hypothetical protein OsJ_08622 [Oryza sativa Japonica Group]
          Length = 390

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 24/161 (14%)
 Frame = +1

Query: 157 LVKRIWKNLALPHVKISLWLLHYHALATTECLEHRGIMIPPGCALCQVALES*QHMFFEC 336
           L K IWK+ A    K  ++L   +A  T + L+ RG  + P C LC    ES QH+F  C
Sbjct: 223 LGKIIWKSRAPVRCKFFMFLAVRNACLTADNLQRRGWKLAPICHLCSKDGESCQHIFQAC 282

Query: 337 EYLKEVPARAKGHVGSLSMN---------FLALRQC---------DLSVIADVWWSVWEE 462
            + ++V  + +  + SLS +         +LA RQ          D  VI  V W +W+E
Sbjct: 283 TFSQQVWVKVQARL-SLSCSPPSSDFAGWWLAARQTVAKIDRKTFDAGVIL-VTWLIWKE 340

Query: 463 RRCRCFGGASVSASNL------SWEVLLGRKEGLESALRMS 567
           R  R F G + S + L       WE    +  GL ++L ++
Sbjct: 341 RNARVFEGTASSVTQLCATMCEEWET--WKSAGLVTSLNVA 379