BLASTX nr result
ID: Ephedra28_contig00025407
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00025407
(388 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004699176.1| RNP-1 like RNA-binding protein [Treponema ca... 70 4e-10
ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema az... 69 5e-10
ref|WP_010253056.1| RNA-binding protein [Treponema primitia] 69 6e-10
gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytric... 67 2e-09
ref|XP_006478116.1| PREDICTED: glycine-rich RNA-binding protein ... 67 3e-09
ref|XP_004976601.1| PREDICTED: glycine-rich RNA-binding protein-... 67 3e-09
gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar... 66 4e-09
ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [... 66 4e-09
emb|CDJ82838.1| RNA recognition motif domain containing protein ... 66 5e-09
emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis] 66 5e-09
ref|XP_006441346.1| hypothetical protein CICLE_v10022555mg [Citr... 65 7e-09
ref|XP_006855610.1| hypothetical protein AMTR_s00044p00073410 [A... 65 7e-09
ref|NP_499734.1| Protein CPF-2 [Caenorhabditis elegans] gi|38776... 65 7e-09
gb|ETX00256.1| RNA-binding protein [Candidatus Entotheonella sp.... 65 9e-09
ref|WP_017315396.1| RNA-binding protein [Mastigocladopsis repens] 65 9e-09
ref|YP_431499.1| RNA-binding protein [Hahella chejuensis KCTC 23... 65 9e-09
ref|XP_006615037.1| PREDICTED: splicing factor U2AF 50 kDa subun... 65 1e-08
ref|YP_007120296.1| RRM domain-containing RNA-binding protein [M... 65 1e-08
ref|XP_623055.1| PREDICTED: splicing factor U2AF 50 kDa subunit ... 65 1e-08
ref|XP_003702568.1| PREDICTED: splicing factor U2AF 50 kDa subun... 65 1e-08
>ref|YP_004699176.1| RNP-1 like RNA-binding protein [Treponema caldaria DSM 7334]
gi|503735870|ref|WP_013969946.1| RNA-binding protein
[Treponema caldaria] gi|338835490|gb|AEJ20668.1| RNP-1
like RNA-binding protein [Treponema caldaria DSM 7334]
Length = 116
Score = 69.7 bits (169), Expect = 4e-10
Identities = 28/72 (38%), Positives = 48/72 (66%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+++G +S E+ +R++F FG++ ++ ETG KG+ F+E +T+EEA AA+AG
Sbjct: 26 LYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAIAGT 85
Query: 208 HGNYFRGRKMRV 173
+G F GR++RV
Sbjct: 86 NGREFEGRQLRV 97
>ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|505824900|ref|WP_015710278.1| RNA-binding protein
[Treponema azotonutricium] gi|333734416|gb|AEF80365.1|
RNP-1 like RNA-binding protein [Treponema azotonutricium
ZAS-9]
Length = 100
Score = 69.3 bits (168), Expect = 5e-10
Identities = 28/72 (38%), Positives = 50/72 (69%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+++G +S E+ +R++F +FG +T ++ E+G+ KG+ FIE +T+EEA AA+ G
Sbjct: 5 LYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGT 64
Query: 208 HGNYFRGRKMRV 173
+G+ F GR++RV
Sbjct: 65 NGHEFEGRQLRV 76
>ref|WP_010253056.1| RNA-binding protein [Treponema primitia]
Length = 99
Score = 68.9 bits (167), Expect = 6e-10
Identities = 31/86 (36%), Positives = 53/86 (61%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+++G +S E+ +R++F +FG++ ++ ETG KG+ FIE T+EEA AA+AG
Sbjct: 5 LYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAIAGT 64
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGA 131
+G F GR++RV + R + G+
Sbjct: 65 NGREFDGRQLRVNEAMDKPRRDRGGS 90
>gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytricha trifallax]
Length = 732
Score = 67.0 bits (162), Expect = 2e-09
Identities = 29/64 (45%), Positives = 46/64 (71%)
Frame = -1
Query: 361 VKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGMHGNYFRGRK 182
+KE H++ FQKFGTI +N+ + +E +G+ FIEF+T+EEA+ A+ GM+G ++GR
Sbjct: 41 LKEPHLKKEFQKFGTIVAVNVPIKNENNLNRGFGFIEFSTKEEAQKAIDGMNGQKYKGRV 100
Query: 181 MRVE 170
+ VE
Sbjct: 101 LAVE 104
>ref|XP_006478116.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
isoform X1 [Citrus sinensis]
Length = 171
Score = 66.6 bits (161), Expect = 3e-09
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+F+ G+S E+ +R+ FQ FG + ++NLV+ +G+AF+ +ATEEE++ A+ GM
Sbjct: 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
Query: 208 HGNYFRGRKMRVELHSGELRNKQ 140
HG + GR + VE+ +Q
Sbjct: 140 HGKFLDGRVIFVEIAKSRAELRQ 162
>ref|XP_004976601.1| PREDICTED: glycine-rich RNA-binding protein-like [Setaria italica]
Length = 147
Score = 66.6 bits (161), Expect = 3e-09
Identities = 29/74 (39%), Positives = 49/74 (66%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+++ G+S EE +R+ F+KFG +T++NLV+ +G+AF+ +A EE+ K A+ GM
Sbjct: 67 LYVHGLSFRTTEESLRNAFEKFGDLTEVNLVMDRAAKRPRGFAFVSYADEEQTKTAIEGM 126
Query: 208 HGNYFRGRKMRVEL 167
HG + GR + VE+
Sbjct: 127 HGKFLDGRVIFVEV 140
>gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 66.2 bits (160), Expect = 4e-09
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTIT-KMNLVVHHETGTCKGYAFIEFATEEEAKAAVAG 212
+F+ +S E+ ++ F+KFGTI ++ L + +TG +G A+I+F TE+EA+AAV G
Sbjct: 175 VFVANLSYDTDEDSLKQAFEKFGTIVGEIGLPISRDTGRIRGIAYIQFETEDEAEAAVKG 234
Query: 211 MHGNYFRGRKMRVELHSGELRNK 143
M+G Y GR +R + RN+
Sbjct: 235 MNGVYLDGRPIRTDFSGDNDRNR 257
>ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500] gi|218712935|gb|EED12360.1| glycine-rich
RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 134
Score = 66.2 bits (160), Expect = 4e-09
Identities = 30/85 (35%), Positives = 52/85 (61%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+F+GG++ ++ +R F+KFGTI + ++ +T +G+ F+ FAT+ EA AA+ GM
Sbjct: 4 LFIGGLAWHTTDDTLRQGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFATDAEADAAIDGM 63
Query: 208 HGNYFRGRKMRVELHSGELRNKQEG 134
+ F GR +RV+ S ++ EG
Sbjct: 64 NNQEFDGRVIRVDRASNNASSRNEG 88
>emb|CDJ82838.1| RNA recognition motif domain containing protein [Haemonchus
contortus]
Length = 878
Score = 65.9 bits (159), Expect = 5e-09
Identities = 32/90 (35%), Positives = 52/90 (57%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
IF+ + KEE + +F+KFG I ++ +++ +TG CKG+A +EF E A AA A
Sbjct: 284 IFVRNLPFTTKEEDLHFLFKKFGEIAEIQVIIDKKTGNCKGFAIVEFVFPESAVAAYASA 343
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASSEA 119
G F+GR M + + E R K++ +E+
Sbjct: 344 DGTIFKGRMMHI-IPGSEKREKKDPEKTES 372
>emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
Length = 196
Score = 65.9 bits (159), Expect = 5e-09
Identities = 30/74 (40%), Positives = 49/74 (66%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+F+ G+S EE +R F++FG +T++NLV+ +G+AF+ +A EEE+K A+ GM
Sbjct: 118 LFIEGLSFRTTEESLRSAFERFGQLTEVNLVMDRVAKRPRGFAFLSYANEEESKNAMEGM 177
Query: 208 HGNYFRGRKMRVEL 167
HG + GR + VE+
Sbjct: 178 HGKFLDGRVIFVEV 191
>ref|XP_006441346.1| hypothetical protein CICLE_v10022555mg [Citrus clementina]
gi|567897718|ref|XP_006441347.1| hypothetical protein
CICLE_v10022555mg [Citrus clementina]
gi|557543608|gb|ESR54586.1| hypothetical protein
CICLE_v10022555mg [Citrus clementina]
gi|557543609|gb|ESR54587.1| hypothetical protein
CICLE_v10022555mg [Citrus clementina]
Length = 171
Score = 65.5 bits (158), Expect = 7e-09
Identities = 29/83 (34%), Positives = 51/83 (61%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+F+ G+S E+ +R+ FQ FG + ++NL++ +G+AF+ +ATEEE++ A+ GM
Sbjct: 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLMMDKIANRPRGFAFLRYATEEESRRAIEGM 139
Query: 208 HGNYFRGRKMRVELHSGELRNKQ 140
HG + GR + VE+ +Q
Sbjct: 140 HGKFLDGRVIFVEIAKSRAELRQ 162
>ref|XP_006855610.1| hypothetical protein AMTR_s00044p00073410 [Amborella trichopoda]
gi|548859397|gb|ERN17077.1| hypothetical protein
AMTR_s00044p00073410 [Amborella trichopoda]
Length = 170
Score = 65.5 bits (158), Expect = 7e-09
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+++ G+S EE +R+ F+ FG + ++ LV+ +G+AF+E+ATEEE++ A+ GM
Sbjct: 79 LYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDKRANRPRGFAFLEYATEEESRQAIEGM 138
Query: 208 HGNYFRGRKMRVEL 167
HG + GR + VE+
Sbjct: 139 HGKFLDGRVIFVEV 152
>ref|NP_499734.1| Protein CPF-2 [Caenorhabditis elegans] gi|3877650|emb|CAB05746.1|
Protein CPF-2 [Caenorhabditis elegans]
Length = 336
Score = 65.5 bits (158), Expect = 7e-09
Identities = 33/95 (34%), Positives = 54/95 (56%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
+F+G +S V E+ +R +F K G + + +V ETG KGY FIEF + A+ A+ +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASSEAQVSSE 104
+G GR +RV+ +G + ++ G+SS A E
Sbjct: 80 NGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVE 114
>gb|ETX00256.1| RNA-binding protein [Candidatus Entotheonella sp. TSY1]
Length = 105
Score = 65.1 bits (157), Expect = 9e-09
Identities = 28/72 (38%), Positives = 47/72 (65%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
I++G + V E VR +F+ GT+ +NL+ ETG +G+ F+E +++EEA AA+A +
Sbjct: 5 IYVGNLPFSVTPEEVRDLFEIHGTVESVNLITDRETGRLRGFGFVEMSSDEEASAAIAAL 64
Query: 208 HGNYFRGRKMRV 173
HG+ +GR + V
Sbjct: 65 HGSQCQGRTLTV 76
>ref|WP_017315396.1| RNA-binding protein [Mastigocladopsis repens]
Length = 106
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/88 (36%), Positives = 54/88 (61%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
IF+G +S V+EE ++ VF ++GT+ ++ + + ETG +G+AF+E TE E AA+ +
Sbjct: 3 IFVGNLSYDVEEEDLKEVFLEYGTVKRVQVAIDRETGQKRGFAFVEMGTEAEETAAIDAL 62
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASS 125
G + GR ++V + + K EG SS
Sbjct: 63 DGAEWMGRNLKV----NKAKPKTEGGSS 86
>ref|YP_431499.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|499713417|ref|WP_011394151.1| RNA-binding protein
[Hahella chejuensis] gi|83631107|gb|ABC27074.1|
RNA-binding protein (RRM domain) [Hahella chejuensis
KCTC 2396]
Length = 90
Score = 65.1 bits (157), Expect = 9e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
I++G ++ V EE +R F FG +T NL++ TG KG+AF+E + EA AA+ G+
Sbjct: 3 IYVGNLAYGVTEEELREAFSSFGEVTSANLIIDRNTGQSKGFAFVEMSNNSEADAAIKGL 62
Query: 208 HGNYFRGRKMRV 173
+ +GR ++V
Sbjct: 63 NDTALKGRNIKV 74
>ref|XP_006615037.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like isoform X3
[Apis dorsata]
Length = 426
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/110 (30%), Positives = 54/110 (49%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
IF+GG+ ++ EE V+ + FG + NLV TG KGYAF E+ A+AG+
Sbjct: 221 IFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKGYAFCEYVDVSMTDQAIAGL 280
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASSEAQVSSEGA*IIDCFGQPNGVI 59
+G +K+ V+ S +N GA + Q+ G ++ G V+
Sbjct: 281 NGMQLGDKKLIVQRASVGAKNPMIGAQAPVQIQVPGLSMVGTSGPATEVL 330
>ref|YP_007120296.1| RRM domain-containing RNA-binding protein [Microcoleus sp. PCC
7113] gi|504993948|ref|WP_015181050.1| RRM
domain-containing RNA-binding protein [Microcoleus sp.
PCC 7113] gi|428250931|gb|AFZ16890.1| RRM
domain-containing RNA-binding protein [Microcoleus sp.
PCC 7113]
Length = 101
Score = 64.7 bits (156), Expect = 1e-08
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
I++G +S V EE +R VF ++GT+ + L ETG +G+AF+E T+EE AA+ +
Sbjct: 3 IYVGNLSYDVTEEDIREVFAEYGTVNNVTLPKDRETGRKRGFAFVEMGTDEEETAAIEAL 62
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASSEA 119
G + GR ++V NK G S +
Sbjct: 63 DGAEWMGRNLKVNKAKPREDNKPFGGGSRS 92
>ref|XP_623055.1| PREDICTED: splicing factor U2AF 50 kDa subunit isoform X2 [Apis
mellifera] gi|572297713|ref|XP_006615035.1| PREDICTED:
splicing factor U2AF 50 kDa subunit-like isoform X1
[Apis dorsata]
Length = 432
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/110 (30%), Positives = 54/110 (49%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
IF+GG+ ++ EE V+ + FG + NLV TG KGYAF E+ A+AG+
Sbjct: 227 IFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKGYAFCEYVDVSMTDQAIAGL 286
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASSEAQVSSEGA*IIDCFGQPNGVI 59
+G +K+ V+ S +N GA + Q+ G ++ G V+
Sbjct: 287 NGMQLGDKKLIVQRASVGAKNPMIGAQAPVQIQVPGLSMVGTSGPATEVL 336
>ref|XP_003702568.1| PREDICTED: splicing factor U2AF 50 kDa subunit-like [Megachile
rotundata]
Length = 432
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/110 (30%), Positives = 54/110 (49%)
Frame = -1
Query: 388 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 209
IF+GG+ ++ EE V+ + FG + NLV TG KGYAF E+ A+AG+
Sbjct: 227 IFIGGLPNYLNEEQVKELLMSFGQLRAFNLVKDSATGLSKGYAFCEYVDVSMTDQAIAGL 286
Query: 208 HGNYFRGRKMRVELHSGELRNKQEGASSEAQVSSEGA*IIDCFGQPNGVI 59
+G +K+ V+ S +N GA + Q+ G ++ G V+
Sbjct: 287 NGMQLGDKKLIVQRASVGAKNPMIGAQAPVQIQVPGLSMVGTSGPATEVL 336