BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00024480
         (964 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...    72   2e-18
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...    72   3e-18
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]          72   4e-18
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...    72   4e-18
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...    70   1e-17
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    71   4e-17
gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsi...    75   5e-17
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...    68   2e-16
emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]    70   5e-16
emb|CBI37296.3| unnamed protein product [Vitis vinifera]               68   1e-15
emb|CAN73532.1| hypothetical protein VITISV_012827 [Vitis vinifera]    57   1e-15
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                   74   2e-15
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                 59   5e-15
emb|CCA23551.1| putative polyprotein [Albugo laibachii Nc14]           55   9e-15
gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsi...    57   2e-14
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]    70   2e-14
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]            84   1e-13
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]    65   5e-13
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...    59   5e-13
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...    69   6e-13

>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score = 72.4 bits (176), Expect(2) = 2e-18
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = -2

Query: 390 EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSF-KPKTT 220
           +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF K  ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 219 NSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
            +   LE++H+D+  PI P   G   Y ++F  DFS+ +  + LK K++VF+I+  F
Sbjct: 522 RAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKF 578



 Score = 47.4 bits (111), Expect(2) = 2e-18
 Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
 Frame = -3

Query: 773 K*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLE 594
           K + +    WYLDSG ++HM G + MF  L   +    V    E+K+ + G  NI + L+
Sbjct: 326 KDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN-VALGDESKMEVKGKGNILIRLK 384

Query: 593 --DNQISLNDTYFVKGLRRNLIFLYRLLIDNY*L------IAYQDVQGNICCRI 456
             D+Q  +++ Y++  ++ N++ L +LL   Y +      ++ +D + N+  ++
Sbjct: 385 NGDHQF-ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKV 437


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
           gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
           polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score = 72.0 bits (175), Expect(2) = 3e-18
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = -2

Query: 390 EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSF-KPKTT 220
           +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF K  ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 219 NSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
            +   LE++H+D+  PI P   G   Y ++F  DFS+ +  + LK K++VF+I+  F
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKF 578



 Score = 47.4 bits (111), Expect(2) = 3e-18
 Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
 Frame = -3

Query: 773 K*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLE 594
           K + +    WYLDSG ++HM G + MF  L   +    V    E+K+ + G  NI + L+
Sbjct: 326 KDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN-VALGDESKMEVKGKGNILIRLK 384

Query: 593 --DNQISLNDTYFVKGLRRNLIFLYRLLIDNY*L------IAYQDVQGNICCRI 456
             D+Q  +++ Y++  ++ N++ L +LL   Y +      ++ +D + N+  ++
Sbjct: 385 NGDHQF-ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKV 437


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score = 72.0 bits (175), Expect(2) = 4e-18
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = -2

Query: 390 EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSF-KPKTT 220
           +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF K  ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 219 NSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
            +   LE++H+D+  PI P   G   Y ++F  DFS+ +  + LK K++VF+I+  F
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKF 578



 Score = 47.0 bits (110), Expect(2) = 4e-18
 Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLE--DNQISLN 573
           WYLDSG ++HM G + MF  L   +    V    E+K+ + G  NI + L+  D+Q  ++
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGN-VALGDESKMEVKGKGNILIRLKNGDHQF-IS 392

Query: 572 DTYFVKGLRRNLIFLYRLLIDNY*L------IAYQDVQGNICCRI 456
           + Y++  ++ N++ L +LL   Y +      ++ +D + N+  ++
Sbjct: 393 NVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKV 437


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score = 72.0 bits (175), Expect(2) = 4e-18
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
 Frame = -2

Query: 390 EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSF-KPKTT 220
           +E + LWH R GH+N   L  ++ K    G P +N     CE C+L K  K+SF K  ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSS 521

Query: 219 NSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
            +   LE++H+D+  PI P   G   Y ++F  DFS+ +  + LK K++VF+I+  F
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKF 578



 Score = 47.0 bits (110), Expect(2) = 4e-18
 Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLE--DNQISLN 573
           WYLDSG ++HM G + MF  L   +    V    E+K+ + G  NI + L+  D+Q  ++
Sbjct: 335 WYLDSGASNHMCGRKSMFAELDESVRGN-VALGDESKMEVKGKGNILIRLKNGDHQF-IS 392

Query: 572 DTYFVKGLRRNLIFLYRLLIDNY*L------IAYQDVQGNICCRI 456
           + Y++  ++ N++ L +LL   Y +      ++ +D + N+  ++
Sbjct: 393 NVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKV 437


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
           thaliana]
          Length = 1272

 Score = 70.1 bits (170), Expect(2) = 1e-17
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
 Frame = -2

Query: 390 EENNKLWHRRLGHINDSYLYKIN-KATTDG-PVMNIKFLNCEDCILTKMHKLSF-KPKTT 220
           +E + LWH R GH+N   L  ++ K    G P +N     CE C+L    K+SF K  ++
Sbjct: 462 KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSS 521

Query: 219 NSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
            +   LE++H+D+  PI P   G   Y ++F  DFS+ +  + LK K++VF+I+  F
Sbjct: 522 RAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKF 578



 Score = 47.4 bits (111), Expect(2) = 1e-17
 Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
 Frame = -3

Query: 773 K*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLE 594
           K + +    WYLDSG ++HM G + MF  L   +    V    E+K+ + G  NI + L+
Sbjct: 326 KDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGN-VALGDESKMEVKGKGNILIRLK 384

Query: 593 --DNQISLNDTYFVKGLRRNLIFLYRLLIDNY*L------IAYQDVQGNICCRI 456
             D+Q  +++ Y++  ++ N++ L +LL   Y +      ++ +D + N+  ++
Sbjct: 385 NGDHQF-ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKV 437


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 70.9 bits (172), Expect(2) = 4e-17
 Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
 Frame = -2

Query: 450  R*QNCLFAMRPVTI*SFLTKEENN--KLWHRRLGHINDSYLYKINKATTDGPVMNIKFLN 277
            R Q+ ++ +   ++      EE+N  +LWHRRLGH+++  L  ++K          K   
Sbjct: 720  RLQHGIYTLMGSSVLGTAAVEEDNCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKLKF 779

Query: 276  CEDCILTKMHKLSFKPKTTNSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRC 97
            CE C++ K  ++ F   +  +  +LE +HSD++ P     H   RY + F  DFS+    
Sbjct: 780  CETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWV 839

Query: 96   FTLKNKNKVFQIWTNFLNLIKIWKTL 19
            + LK K++VF          K WKT+
Sbjct: 840  YFLKAKDEVF-------GKFKEWKTM 858



 Score = 44.7 bits (104), Expect(2) = 4e-17
 Identities = 26/82 (31%), Positives = 44/82 (53%)
 Frame = -3

Query: 779 LTK*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLT 600
           LT   S S  SW LD+G + HM  +R++F   K    +  VK   + +L + G  ++ + 
Sbjct: 609 LTVSTSSSAESWILDTGASYHMAYSRDLFTTFKEW--NGSVKLGDDGELGVKGSGSVQIK 666

Query: 599 LEDNQISLNDTYFVKGLRRNLI 534
           + D  +   + ++V GLR+NLI
Sbjct: 667 MYDGLVRTLNAWYVPGLRKNLI 688


>gb|AAD32906.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 822

 Score = 75.5 bits (184), Expect(2) = 5e-17
 Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -2

Query: 405 SFLTKEENNKLWHRRLGHINDSYL--YKINKATTDGPVMNIKFLNCEDCILTKMHKLSF- 235
           + + K+E  +LWH+RLGH   S L   +  +  T  P  N++   CE CIL+K  +  F 
Sbjct: 149 AMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVEEGKCESCILSKHSRDPFP 208

Query: 234 KPKTTNSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWT 55
           K   T + + LE++HSD+  P+        RYI+ F  D ++M   + LK K++VFQ + 
Sbjct: 209 KESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFIDDATRMVWVYFLKAKSEVFQTFK 268

Query: 54  NFLNLIK 34
            F NL++
Sbjct: 269 KFKNLVE 275



 Score = 39.7 bits (91), Expect(2) = 5e-17
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
 Frame = -3

Query: 812 TETTND--KTYVFLTK*D---SDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQY---V 657
           TET  +  K  VF+ + +      G +W +DSGC +HMT N ++F      IN  +   +
Sbjct: 3   TETAEEVKKNLVFIARQEIKEPSGGNTWLIDSGCTNHMTPNEKLF----TKINRDFKVPI 58

Query: 656 KTAGENKLPI*GIDNINLTLEDNQISLNDTYFVKGLRRNLIFLYRLLIDNY 504
           +      +   G  +I +    ++  + D   V  L +NL+ + +++I+ Y
Sbjct: 59  RVGNGAVMMSEGKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGY 109


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score = 67.8 bits (164), Expect(2) = 2e-16
 Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
 Frame = -2

Query: 405 SFLTKEENN-KLWHRRLGHINDSYLYKINKATTDGPVMNIKFLN-CEDCILTKMHKLSFK 232
           + + KE+N   LWH R GH+N ++L  + +      + NIK L+ CE CI  K  + SF 
Sbjct: 433 ALVVKEKNETNLWHLRYGHLNVNWLKLLVQKDMVIGLPNIKELDLCEGCIYGKQTRKSFP 492

Query: 231 P-KTTNSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWT 55
             K+  +T  LE++H+D+  P+     G  RY ++FT D+S+ S  + LK K++ F+ + 
Sbjct: 493 VGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFK 552

Query: 54  NF 49
            F
Sbjct: 553 KF 554



 Score = 45.4 bits (106), Expect(2) = 2e-16
 Identities = 27/120 (22%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
 Frame = -3

Query: 833 QHNKANITETTNDKTYVFL--TK*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQY 660
           +   AN T+   +++ +F+  ++    +   W++DSGC++HM+ ++ +F +L      + 
Sbjct: 280 EQKDANFTQNVEEESKLFMASSQITESANAVWFIDSGCSNHMSSSKSLFRDLDESQKSE- 338

Query: 659 VKTAGENKLPI*GIDNINL-TLEDNQISLNDTYFVKGLRRNLIFLYRLLIDNY*LIAYQD 483
           V+   + ++ I G   + + T++ N   L D  +V  L  NL+ + +L+   Y ++ Y +
Sbjct: 339 VRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQLMTSGYSVVFYDN 398


>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score = 70.5 bits (171), Expect(2) = 5e-16
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
 Frame = -2

Query: 375 LWHRRLGHINDSYLYKINKAT--TDGPVMNIKFLNCEDCILTKMHKLSF-KPKTTNSTNI 205
           LWH R GH+N   L  + +    T  P +      CE+C++ K H+  F K K+     +
Sbjct: 425 LWHFRYGHLNFGGLKTLQQKNMVTGLPPIXTPSQICEECVVGKQHRYQFPKGKSWRXNKV 484

Query: 204 LEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNFLNLIK 34
           LE++HSDI  PI P  +G  RY I F  D+S  +  + L+ K++ F  + +F  L++
Sbjct: 485 LELVHSDICGPINPTSNGGKRYFITFIXDYSXKTWVYFLQEKSEAFSTFKSFKMLVE 541



 Score = 41.2 bits (95), Expect(2) = 5e-16
 Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGEN-KLPI*GIDNINL-TLEDNQISLN 573
           WY+D+GC++HM G++  F +L          T G+N K+ + G  ++ + + E +   ++
Sbjct: 293 WYIDTGCSNHMCGDKSAFSDLDETFRXSV--TFGDNSKVSVMGKGSVXIHSKEKSDQIIS 350

Query: 572 DTYFVKGLRRNLIFLYRLLIDNY*LIAYQDVQGNICCRITQDNRIACL 429
           + +FV  L+ NL+ + +L    Y +     V     CRI QD ++  +
Sbjct: 351 NVFFVPDLKTNLLSVXQLQEKGYEIFIKDGV-----CRI-QDEKLGLI 392


>emb|CBI37296.3| unnamed protein product [Vitis vinifera]
          Length = 3048

 Score = 67.8 bits (164), Expect(2) = 1e-15
 Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
 Frame = -2

Query: 435 LFAM-RPVTI*SFLTKEENN-KLWHRRLGHINDSYLYKIN--KATTDGPVMNIKFLNCED 268
           L+A+ +P++   F T  E+  +LWH R GH++   L  +   K     P        C+D
Sbjct: 431 LYALSQPISSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKD 490

Query: 267 CILTKMHKLSFKPKTTN--STNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCF 94
           C++ K H+ S  PK +N  +  IL+++H+DI  PI PI +   RY++ FT DFS+ +  +
Sbjct: 491 CLVGKQHRSSI-PKKSNWRAAEILQLVHADICGPINPISNSKKRYLLTFTDDFSRKTWVY 549

Query: 93  TLKNKNKVFQIWTNFLNLIK 34
            L  K++ F ++ +F   ++
Sbjct: 550 FLVEKSEAFAVFKSFKTYVE 569



 Score = 42.4 bits (98), Expect(2) = 1e-15
 Identities = 24/90 (26%), Positives = 44/90 (48%)
 Frame = -3

Query: 788 YVFLTK*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNI 609
           YV L K   +   +W+LDSGC++HM G ++ F +         VK      + + G  N+
Sbjct: 308 YVDLNKTSRED--TWFLDSGCSNHMCGKKDYFSDFDGTFRDS-VKLGNNTSMSVLGKGNV 364

Query: 608 NLTLEDNQISLNDTYFVKGLRRNLIFLYRL 519
            L + +    +   ++V  L+ NL+ + +L
Sbjct: 365 RLKVNEMTQIITGVFYVPELKNNLLSIGQL 394


>emb|CAN73532.1| hypothetical protein VITISV_012827 [Vitis vinifera]
          Length = 1194

 Score = 56.6 bits (135), Expect(2) = 1e-15
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
 Frame = -3

Query: 797 DKTYVFLTK*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GI 618
           +  ++  T    D    W +DSGC++HMTG++E   +L        V T   +K+PI  I
Sbjct: 304 ESXFIATTSEQIDYEKDWIIDSGCSNHMTGDKEKLXDLSEYKGRHMVVTXNNSKJPIAHI 363

Query: 617 DN--INLTLEDNQISLNDTYFVKGLRRNLIFLYRLLID-NY*LIAYQDVQ 477
            N  ++     N +SL + Y V G+++NL+ + +L    ++ L   QDV+
Sbjct: 364 GNTVVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSGHFVLFGPQDVK 413



 Score = 53.5 bits (127), Expect(2) = 1e-15
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
 Frame = -2

Query: 393 KEENNKLWHRRLGHINDSYL-YKINKATTDG-PVMNI-KFLNCEDCILTKMHKLSFKPKT 223
           K E   L H RL H++ S L   + K+   G P + + K   C  C   K H+L ++   
Sbjct: 449 KNETTDLXHMRLSHVSYSKLTVMMKKSMLKGLPQLEVRKDTICAGCXYGKAHQLPYEESK 508

Query: 222 TNSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
             +   LE++HSD+F P+       ++Y+  F  DFS+      +K K++ F  +  F
Sbjct: 509 WKTKGPLELIHSDVFGPVKXASLSGMKYMXTFIDDFSRYVWVHFMKEKSETFSKFKEF 566


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 74.3 bits (181), Expect(2) = 2e-15
 Identities = 33/116 (28%), Positives = 66/116 (56%)
 Frame = -2

Query: 396 TKEENNKLWHRRLGHINDSYLYKINKATTDGPVMNIKFLNCEDCILTKMHKLSFKPKTTN 217
           ++EE   +WHRRLGH+++  L  + +      + ++    CE C+++K H+L F   T  
Sbjct: 418 SQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTAR 477

Query: 216 STNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
           S +IL+++HSD+++    +  G  +Y + F  D+S+    + +K K+ V+ ++  F
Sbjct: 478 SKHILDLIHSDVWESP-EVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEF 532



 Score = 35.0 bits (79), Expect(2) = 2e-15
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLEDNQI-SLND 570
           W +DSG   HMT  R+ F   +  ++   V    ++ L I GI  + + + D  I +L +
Sbjct: 291 WIVDSGATWHMTPRRDWFCTYE-PVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQE 349

Query: 569 TYFVKGLRRNLIFLYRLLIDNY*LIAYQDVQGNI 468
              VK L +NL+ + +L    Y      D+QG I
Sbjct: 350 VRHVKELAKNLLSVGQLDDLGY----KYDIQGGI 379


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score = 58.9 bits (141), Expect(2) = 5e-15
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
 Frame = -2

Query: 399  LTKEENNKLWHRRLGHINDSYLYKINKATTDGPVMNIKFLN---CEDCILTKMHKLSFKP 229
            + K +   LWHRRL H+    L K+ K      + N+ F     C  C   K H +  + 
Sbjct: 858  VAKSDKGWLWHRRLAHVGMRNLAKLQKDNHIIGLTNVVFEKDRVCGACQAGKQHGVPHQS 917

Query: 228  KTTNSTNI-LEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTN 52
            K   +T   LE+LH D+F P+  I  G  +Y ++   DFS+ +  F L +K +  +I   
Sbjct: 918  KNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSRFTWVFFLSDKGETQEILKK 977

Query: 51   FL 46
            F+
Sbjct: 978  FM 979



 Score = 49.3 bits (116), Expect(2) = 5e-15
 Identities = 36/110 (32%), Positives = 55/110 (50%)
 Frame = -3

Query: 764  SDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLEDNQ 585
            S  G SW LDSGC +HMTG ++MF  L+     Q +      K  + GI  I ++   +Q
Sbjct: 729  SSGGSSWVLDSGCTNHMTGEKDMFHTLQLTQEAQEIVFGDSGKSKVIGIGKIPIS---DQ 785

Query: 584  ISLNDTYFVKGLRRNLIFLYRLLIDNY*LIAYQDVQGNICCRITQDNRIA 435
             SL++   V  L  NL+ + +L    Y  + + DV   I  R  +D+ +A
Sbjct: 786  QSLSNVLLVDSLSYNLLSVSQLCGMGYNCL-FSDVDVKILRR--EDSSVA 832


>emb|CCA23551.1| putative polyprotein [Albugo laibachii Nc14]
          Length = 343

 Score = 55.1 bits (131), Expect(2) = 9e-15
 Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
 Frame = -3

Query: 839 SMQHNKANITETTNDKTYVFLTK*DSDSG*SWYLDSGCNSHMTGNREMF*NLKYLINHQY 660
           S + NKA      +++TY F T  +S    +W LDSG +SHM  N+  F +L+ L     
Sbjct: 11  SWKSNKAE-----SEETYAFTTFQESRG--NWILDSGASSHMCPNKSEFTDLQALKKKIP 63

Query: 659 VKTAGENKLPI*GIDNINLTLEDNQ-ISLNDTYFVKGLRRNLIFLYRLLIDNY*LIAYQD 483
           +  A  +K+   G+ NI   L++N+ I ++D  +V GL + L+ +  L       I  Q 
Sbjct: 64  ISIANGSKVDAVGVGNIFARLKNNKNIKIDDVLYVFGLNQKLLSVSALA-----EIGLQI 118

Query: 482 VQGNICCRITQDNR 441
           V  N+ C I  D+R
Sbjct: 119 VFRNLTCEIKSDDR 132



 Score = 52.4 bits (124), Expect(2) = 9e-15
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
 Frame = -2

Query: 384 NNKLWHRRLGHINDSYL-----YKINKATTDGPVMNIKFLN-CEDCILTKMHKLSFKPKT 223
           +  +WH R G+I+   +     Y +    T    M+ +    CE CI  K    SF    
Sbjct: 169 DESIWHARFGYISTKRMRNMKNYVVGLDMTTKLAMDCEESEMCERCINGKSSVQSFGSSA 228

Query: 222 TNSTN---ILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTN 52
                   +LE++HS++  P+     G  RY++ F  DFS++   + +++K KVF  +T 
Sbjct: 229 YGKVKRKALLEVVHSNVTGPMRVKSQGGARYMVTFIDDFSRLIHAYFIQSKGKVFNKFTE 288

Query: 51  FLNL 40
           F +L
Sbjct: 289 FKSL 292


>gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1200

 Score = 56.6 bits (135), Expect(2) = 2e-14
 Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
 Frame = -2

Query: 372 WHRRLGHINDSYLYKINKATTDGPVMNIKFLN-----CEDCILTKMHKLSFKPKTT-NST 211
           WH RLGHIN   L  I    T   V+ I         C  C+L K  +  F   TT  ++
Sbjct: 390 WHARLGHIN---LETIKAMVTKEFVIGIPSAPKEKEICASCMLGKQARQVFPKATTYRAS 446

Query: 210 NILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNF 49
            ILE++H D+  PI P      RYI++   D S+    F LK K++ F  +  F
Sbjct: 447 QILELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKEKSEAFGKFKTF 500



 Score = 50.1 bits (118), Expect(2) = 2e-14
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
 Frame = -3

Query: 749 SWYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNI-NLTLEDNQISLN 573
           +WYLD+G ++HMTGNR+ F  L  ++  + VK   ++++ I G  +I  LT      +L 
Sbjct: 256 AWYLDNGASNHMTGNRDWFCKLDEMVTGK-VKFGDDSRIDIRGKGSILFLTKNGEPKTLA 314

Query: 572 DTYFVKGLRRNLIFLYRL--------LIDNY*LIAYQDVQGNICCRITQD-NRI 438
           + Y++  L+ N+I L +         L DNY  +   D  GN+  + T+  NR+
Sbjct: 315 NVYYIPDLKSNIISLGQATEAGCDVRLKDNY--LTLHDRDGNLLVKATRSRNRL 366


>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
          Length = 1246

 Score = 69.7 bits (169), Expect(2) = 2e-14
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
 Frame = -2

Query: 375 LWHRRLGHINDSYLYKIN--KATTDGPVMNIKFLNCEDCILTKMHKLSF-KPKTTNSTNI 205
           LWH R GH+N   L  +      T  P +      CE+C+  K H+  F K K+     +
Sbjct: 425 LWHFRYGHLNFXXLKTLQXKNMVTGLPXIQTXSQICEECVXGKQHRYQFPKGKSWRXNKV 484

Query: 204 LEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNFLNLIK 34
           LE++HSDI  PI P  +G  RY I F  D+S  +  + L+ K++ F  + +F  L++
Sbjct: 485 LELVHSDICGPINPTSNGGKRYFITFIXDYSWKTWVYFLQEKSEAFSTFKSFKMLVE 541



 Score = 36.6 bits (83), Expect(2) = 2e-14
 Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGEN-KLPI*GIDNINL-TLEDNQISLN 573
           WY+D+ C++HM G++  F +L     +    T G+N K+ + G  ++ + + E +   ++
Sbjct: 293 WYIDTXCSNHMCGDKSAFSDLDETFRNSV--TFGDNSKVSVMGKGSVRIHSKEKSDKIIS 350

Query: 572 DTYFVKGLRRNLIFLYRLLIDNY*LIAYQDVQGNICCRITQDNRIACL 429
           + +FV  L+  L+ + +L    Y +     V     CRI QD ++  +
Sbjct: 351 NVFFVPDLKTTLLSVGQLQEKGYEIFIKDGV-----CRI-QDEKLGLI 392


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
 Frame = -2

Query: 390 EENNKLWHRRLGHINDSYLYKINKATTDGPVMNIKFLNCEDCILTKMHKLSFKP-KTTNS 214
           + N KLWHRRLGH+++  + ++ K      +  I+   C DC+  K +++SFK    +  
Sbjct: 417 DSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRR 476

Query: 213 TNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTNFLNLIK 34
            N+L+++HSD+  P F    G  RY + F  D S+ +  +TLK K++VFQ++  FL L++
Sbjct: 477 QNVLDLVHSDVCGP-FKKSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVE 535


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score = 65.5 bits (158), Expect(2) = 5e-13
 Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
 Frame = -2

Query: 402 FLTKEENNKLWHRRLGHINDSYLYKINKA--TTDGPVMNIKFLNCEDCILTKMHKLSFKP 229
           F  K + + +WH+R GH N   L  + +A    D P +++    CE C L K  +  F  
Sbjct: 436 FSAKIDESVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNAQTCESCELGKQQRQPFPQ 495

Query: 228 KTTN-STNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMSRCFTLKNKNKVFQIWTN 52
             +  +T+ LE++HSDI  P+      +  Y  +F  DFS+M+  + LK K++V  ++ +
Sbjct: 496 NMSKRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKS 555

Query: 51  FLNLIK 34
           F  +++
Sbjct: 556 FKKMVE 561



 Score = 36.2 bits (82), Expect(2) = 5e-13
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
 Frame = -3

Query: 887 YFNTEGPNFKRIRVSKSMQHNK----ANITETT-NDKTYVFLTK*--DSDSG*SWYLDSG 729
           + N  G + K  R  K    ++    A++TE   ND  ++F+      S    +W +DSG
Sbjct: 262 FCNKLGHSEKYCRAKKKQSQHQPEQHASVTEEDKNDDEHLFMASQALSSHELNTWLIDSG 321

Query: 728 CNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLEDNQISLNDTYFVKGL 549
           C SHMT +  +F ++   +  + VK      +   G   I ++ +     + +  ++  L
Sbjct: 322 CTSHMTKHLSIFTSIDRSVQPK-VKLGNGEVVQAKGKGTIAISTKRGTKIVTNVLYIPDL 380

Query: 548 RRNLIFLYRLLIDNY 504
            +NL+ + ++L + Y
Sbjct: 381 DQNLLSVAQMLRNGY 395


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score = 59.3 bits (142), Expect(2) = 5e-13
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
 Frame = -2

Query: 435 LFAMRPVTI*SFLT-----KEENNK--LWHRRLGHINDSYLYKINKATT-DGPVM-NIKF 283
           L+ +R  T+  ++T     K+E +K  +WH RLGH+++  + ++ K    DG    N+KF
Sbjct: 296 LYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKF 355

Query: 282 LNCEDCILTKMHKLSFKPKTTNSTNILEILHSDIFDPIFPIYHGHIRYIIIFTYDFSKMS 103
             CE C+  K  ++ F      +  IL+ +H+D++ P      G  RY++    D+S+  
Sbjct: 356 --CEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKV 413

Query: 102 RCFTLKNKNKVFQIWTNFLNLIK 34
             + LK+K+  F  +  +  +IK
Sbjct: 414 WPYFLKHKDDTFAAFKEWKVMIK 436



 Score = 42.4 bits (98), Expect(2) = 5e-13
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLEDNQI-SLND 570
           W LD+ C+ H+  NR+ F + K + N   V+   +N   I GI ++ +   D    +L D
Sbjct: 187 WILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKD 246

Query: 569 TYFVKGLRRNLIFLYRLLIDNY 504
              +  + RNLI L  L  + Y
Sbjct: 247 VRHIPRMARNLISLSTLDAEGY 268


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score = 69.3 bits (168), Expect(2) = 6e-13
 Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
 Frame = -2

Query: 435 LFAMRPVTI*SF--LTKEENNKLWHRRLGHINDSYLYKINKATTDGPVMNIKFLNCEDCI 262
           L   RPVT  S   + ++++  LWHRRLGH++   +  + K          K   CEDCI
Sbjct: 396 LLQWRPVTEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCI 455

Query: 261 LTKMHKLSFKPKTTNSTNILEILHSDIFD-PIFPIYHGHIRYIIIFTYDFSKMSRCFTLK 85
             K  ++ F     ++   LE +HSD++  P  P   G  +Y I F  D+++  R + LK
Sbjct: 456 YGKAKRIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLK 515

Query: 84  NKNKVFQIWTNFLNLIK 34
            K++ F  +  + NL++
Sbjct: 516 TKDEAFDKFVEWANLVE 532



 Score = 32.0 bits (71), Expect(2) = 6e-13
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -3

Query: 746 WYLDSGCNSHMTGNREMF*NLKYLINHQYVKTAGENKLPI*GIDNINLTLEDNQ-ISLND 570
           W +D+GC+ HMT  RE F +L        V+   +    + GI  I +  E    + L +
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGS-VRMGNKTVSKVRGIGTIRVKNEAGMVVRLTN 345

Query: 569 TYFVKGLRRNLIFL 528
             ++  + RNL+ L
Sbjct: 346 VRYIPEMDRNLLSL 359