BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00024127
         (1046 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   123   4e-57
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   123   5e-57
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu...   120   1e-56
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...   121   3e-56
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me...   123   2e-55
ref|XP_006857929.1| hypothetical protein AMTR_s00069p00150990 [A...   120   4e-55
gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus no...   115   4e-54
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub...   125   2e-53
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   118   2e-53
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub...   125   2e-53
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su...   117   2e-53
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi...   120   4e-53
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub...   122   4e-53
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]           120   4e-53
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...   116   6e-53
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...   116   6e-53
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub...   116   6e-53
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   9e-53
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   9e-53
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   9e-53

>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  123 bits (308), Expect(3) = 4e-57
 Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
 Frame = +3

Query: 528  SKYMSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPA 707
            S+ ++L++QL+N Q G            AA L+    + L  +QMQQL +FC  ++  PA
Sbjct: 473  SELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPA 532

Query: 708  ILKAPKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLM 881
            I+KAP L   +WTGKQLF M LP   NY    + V IS+GE++S S  S WL   D +L 
Sbjct: 533  IIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLF 592

Query: 882  QKIIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQI 1043
              +++D    A+ ++   Q +L E++S+ G SVSL DI+L+ +++    MI ++
Sbjct: 593  SSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEV 646



 Score =  117 bits (294), Expect(3) = 4e-57
 Identities = 54/123 (43%), Positives = 80/123 (65%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           E L +SE +N +N  K+    N R+ +      RR G L+     +  + GD+  R +TD
Sbjct: 349 EELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTD 408

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD+++INR P++H+HS+I+  +KVL   S +SINP+ C+PF  DFDGDCLHG+IPQS+ S
Sbjct: 409 GDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDS 468

Query: 517 KAE 525
           + E
Sbjct: 469 RVE 471



 Score = 29.6 bits (65), Expect(3) = 4e-57
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 45  CNKLSDTCPPVENVNRGESQNSHHSGLKWLKDTALGKRKAH 167
           C K S         +  +   S  SGLKW+K+  LGKR  H
Sbjct: 284 CLKTSKASNLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNH 324


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  123 bits (308), Expect(3) = 5e-57
 Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 2/174 (1%)
 Frame = +3

Query: 528  SKYMSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPA 707
            S+ ++L++QL+N Q G            AA L+    + L  +QMQQL +FC  ++  PA
Sbjct: 503  SELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPA 562

Query: 708  ILKAPKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLM 881
            I+KAP L   +WTGKQLF M LP   NY    + V IS+GE++S S  S WL   D +L 
Sbjct: 563  IIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLF 622

Query: 882  QKIIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQI 1043
              +++D    A+ ++   Q +L E++S+ G SVSL DI+L+ +++    MI ++
Sbjct: 623  SSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEV 676



 Score =  117 bits (294), Expect(3) = 5e-57
 Identities = 54/123 (43%), Positives = 80/123 (65%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           E L +SE +N +N  K+    N R+ +      RR G L+     +  + GD+  R +TD
Sbjct: 379 EELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTD 438

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD+++INR P++H+HS+I+  +KVL   S +SINP+ C+PF  DFDGDCLHG+IPQS+ S
Sbjct: 439 GDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDS 498

Query: 517 KAE 525
           + E
Sbjct: 499 RVE 501



 Score = 29.3 bits (64), Expect(3) = 5e-57
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 108 SHHSGLKWLKDTALGKRKAH 167
           S  SGLKW+K+  LGKR  H
Sbjct: 335 SKMSGLKWIKEVLLGKRTNH 354


>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
           cacao]
          Length = 1484

 Score =  120 bits (300), Expect(3) = 1e-56
 Identities = 52/127 (40%), Positives = 86/127 (67%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           ERL ++E +N +N  +++   + R+ +    + RR G L R     +L++GD   R + +
Sbjct: 360 ERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNN 419

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD+I+INR P++H+HSLI+  +KVL   S +SINP++C+PF  DFDGDCLHG++PQS+ +
Sbjct: 420 GDIILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKA 479

Query: 517 KAEALNI 537
           + E + +
Sbjct: 480 RVELIEL 486



 Score =  116 bits (291), Expect(3) = 1e-56
 Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 2/161 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPAILK 716
            +SL++QL+N Q G            AA+L+    + L  +QMQQL +FC +  P PAI+K
Sbjct: 487  VSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPFPAIVK 546

Query: 717  APKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
            AP L+  +WTGKQL  M  P   +Y    ++V I  GE++S S  S WL  +D +L Q +
Sbjct: 547  APLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGNLFQSL 606

Query: 891  IRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNN 1013
            I+      + ++   Q +L E++S+ G SVSL D++L+ ++
Sbjct: 607  IKHYQGKVLDFLYAAQEVLCEWLSMRGLSVSLSDLYLSSDS 647



 Score = 32.3 bits (72), Expect(3) = 1e-56
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 90  RGESQNSHHSGLKWLKDTALGKRKAHC 170
           R +   S+ SGL+++KD  LGKR  HC
Sbjct: 310 RNKDSASNMSGLRYMKDVILGKRNDHC 336


>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1492

 Score =  121 bits (303), Expect(3) = 3e-56
 Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS--EIPMPAI 710
            + LS QLLN+Q G            AA  LTSS +FL+  + QQL + CSS    PMP+I
Sbjct: 521  VGLSGQLLNAQDGRSLVSLTHDSLTAAHQLTSSDVFLQKAEFQQLQMLCSSVSSTPMPSI 580

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYKSSE-VFISEGEILSCSGTSKWLSQSDSSLMQK 887
            LK+ K QGPLWTGKQLF M +PS +N    E + I + E+L+ S  S WL  + SSL   
Sbjct: 581  LKSSKSQGPLWTGKQLFGMLIPSGMNINFDEKLHIKDSEVLAFSSGSFWLQNNTSSLFSV 640

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            +  +    A+ ++   Q +L EF+++ G SVSL D +L  ++    K+I +++
Sbjct: 641  MFEEYGCKALEFLSSSQDVLCEFLTMRGLSVSLSDFYLLSDHYSRRKLIEEVH 693



 Score =  120 bits (301), Expect(3) = 3e-56
 Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDG 339
           L VSE V+ +N   I  + N H +TK +    RRNG L     A++L+IGD+  R + DG
Sbjct: 396 LVVSEQVSSYNFETINLKCNLHLLTKEVLL-VRRNGRLIFIRKANKLEIGDIAYRPLQDG 454

Query: 340 DLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSK 519
           DLI++NR P++H+HSLI+   K+L++ SA+SINP+ C PF  DFDGDCLHG++PQSL S+
Sbjct: 455 DLILVNRPPSVHQHSLIALSAKILSSHSAVSINPLCCGPFQGDFDGDCLHGYVPQSLQSR 514

Query: 520 AE 525
            E
Sbjct: 515 VE 516



 Score = 26.2 bits (56), Expect(3) = 3e-56
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 6   VHSLGRLTNDYFQCNKLSDTCPPVENVNRGESQNSHHS-GLKWLKDTALGKR 158
           V++   +T+   +C K S         + GES  S  + G KWLKD  L KR
Sbjct: 318 VYASSAVTSRVMECLKSSKL---YSRKSDGESSTSTDTYGTKWLKDIILSKR 366


>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1687

 Score =  123 bits (308), Expect(3) = 2e-55
 Identities = 62/175 (35%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
 Frame = +3

Query: 528  SKYMSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPA 707
            ++ ++L +QL+N Q G            AA LL    +    YQ+QQL + C+ E+  PA
Sbjct: 634  NELVALDRQLINGQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPA 693

Query: 708  ILKAPKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLM 881
            I KAP    P W+GKQLF M LPS  +Y   S++VF+ +GE++SCS +S WL  S++++ 
Sbjct: 694  IFKAPSSNTPFWSGKQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVF 753

Query: 882  QKIIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            Q ++       +  +   Q  L E++S++GFSVSL D++L+ ++     M+ +I+
Sbjct: 754  QSLVEHFQGKILDVLHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEIS 808



 Score =  114 bits (285), Expect(3) = 2e-55
 Identities = 56/123 (45%), Positives = 79/123 (64%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           E L VSE VNR NR+ +      R+ +    N RRNG          L+IGD++ R + D
Sbjct: 510 EALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVD 569

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD ++INR P++H+HS+I+  ++VL   S +SINPI C+P   DFDGDCLHG+IPQS+ +
Sbjct: 570 GDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGA 629

Query: 517 KAE 525
           + E
Sbjct: 630 RVE 632



 Score = 27.7 bits (60), Expect(3) = 2e-55
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 117 SGLKWLKDTALGKR 158
           SGL+W+KD  LGKR
Sbjct: 469 SGLRWMKDVVLGKR 482


>ref|XP_006857929.1| hypothetical protein AMTR_s00069p00150990 [Amborella trichopoda]
           gi|548862031|gb|ERN19396.1| hypothetical protein
           AMTR_s00069p00150990 [Amborella trichopoda]
          Length = 966

 Score =  120 bits (300), Expect(3) = 4e-55
 Identities = 62/139 (44%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
 Frame = +3

Query: 537 MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPAILK 716
           M+L  QLLN Q G            AA+L+T +  FL+ +QMQQL +FC SE+P+PAI K
Sbjct: 558 MTLHHQLLNGQDGLPLVSLSHDSLTAAYLVTRNDEFLDQFQMQQLQMFCPSELPIPAICK 617

Query: 717 APKLQGPLWTGKQLFQMTLPSNLNYK--SSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
           +P  +GPLWTG Q F M LP +L+Y+  S+ V ISEGE+L+ SG S+WL  S+  +   I
Sbjct: 618 SPLSRGPLWTGHQFFSMFLPKSLDYQYVSNGVLISEGELLTTSGESRWLQNSNEGIFFAI 677

Query: 891 IRDSPSSAVHYIGCCQSML 947
           ++  P  A+ Y+   Q  L
Sbjct: 678 VKHVPLKALSYLHSAQEAL 696



 Score =  114 bits (286), Expect(3) = 4e-55
 Identities = 54/123 (43%), Positives = 79/123 (64%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           E L + + VN FN + +       + +      RR G L        L++GD+  R + D
Sbjct: 431 ENLMIPQHVNLFNLKMLTSCAYSILQQKTVFYVRRKGDLVPVKHPYDLEVGDVIYRNLRD 490

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GDL++INR P++H+HSLI+F ++VLN +S ISINP+ C+PF  DFDGDCLHGF+PQS+ +
Sbjct: 491 GDLLMINRPPSVHQHSLIAFTVRVLNMKSVISINPLCCSPFFGDFDGDCLHGFVPQSIDN 550

Query: 517 KAE 525
           + E
Sbjct: 551 RVE 553



 Score = 29.3 bits (64), Expect(3) = 4e-55
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 3   IVHSLGRLTNDYFQCNKLSDTCPPVENVNRGESQNSHHSGLKWLKDTALGKR 158
           +V + G L  DYF+ +K           N G S +      KW KDT LGKR
Sbjct: 358 LVTTRGNLVLDYFKESKFGGKKLWKAVANGGSSSS------KWFKDTVLGKR 403


>gb|EXC17779.1| DNA-directed RNA polymerase D subunit 1 [Morus notabilis]
          Length = 1410

 Score =  115 bits (289), Expect(3) = 4e-54
 Identities = 56/123 (45%), Positives = 83/123 (67%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           ER+ +S  +N+ N  K     + R+T+   +   R+  + R      LKIGD   R ++D
Sbjct: 307 ERMHISVVLNKLNLEKSDACRDMRVTEQGIY-IHRDSHIVRVRPTDFLKIGDTIYRPLSD 365

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GDL++INR P++H+HS ++F +KVL T SA+S+NP+ C+PF ADFDGDCLHG+IPQS+ S
Sbjct: 366 GDLVLINRPPSIHQHSHVAFSVKVLPTGSALSLNPLCCSPFRADFDGDCLHGYIPQSVAS 425

Query: 517 KAE 525
           + E
Sbjct: 426 RVE 428



 Score =  112 bits (281), Expect(3) = 4e-54
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPAILK 716
            +SL KQLLN Q G            AA L+    + +  +QMQQL +F S     PAI+K
Sbjct: 433  VSLDKQLLNGQSGKNLISLSQDSLTAAHLMLEDSVTINRFQMQQLQMFISHHPLSPAIIK 492

Query: 717  APKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
            AP L  P+WTGKQ+F M LP   +Y   S+ V+I  GE++S  G+S WL  +D ++ Q +
Sbjct: 493  APSLSTPVWTGKQVFSMLLPEGFDYVFSSANVYIKNGELISAEGSS-WLRDTD-NIFQSL 550

Query: 891  IRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLA 1004
             ++ P   +  +   Q +L E++S  G SVSLLD++L+
Sbjct: 551  AKNFPDKVLDILFAAQEILCEWLSTRGLSVSLLDLNLS 588



 Score = 32.0 bits (71), Expect(3) = 4e-54
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 SHHSGLKWLKDTALGKRKAHCL 173
           S+ SG +W+K+  LGKR  HCL
Sbjct: 263 SNTSGSRWVKEVVLGKRSDHCL 284


>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Cicer arietinum] gi|502160026|ref|XP_004511608.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X2 [Cicer arietinum]
            gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
            RNA polymerase D subunit 1-like isoform X3 [Cicer
            arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
            DNA-directed RNA polymerase D subunit 1-like isoform X4
            [Cicer arietinum]
          Length = 1475

 Score =  125 bits (313), Expect(3) = 2e-53
 Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
 Frame = +3

Query: 528  SKYMSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPA 707
            ++ ++L KQL+N Q G            AA+LL    + L  YQMQQL + CS ++  PA
Sbjct: 477  NELVALDKQLINGQSGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQLQMHCSRKLIPPA 536

Query: 708  ILKAPKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLM 881
            I+KAP      W+GKQLF M +PS+ +Y   S  VF+ +GE++SCS  S WL  SD+++ 
Sbjct: 537  IVKAPSSNTSCWSGKQLFSMLMPSSFDYAFPSDGVFVCDGELISCSEASGWLRDSDNNVF 596

Query: 882  QKIIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            Q ++       +  +   Q  L E++S++GFSVSL D++L+ ++     MI +I+
Sbjct: 597  QSLVEHFQGKTLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIS 651



 Score =  105 bits (263), Expect(3) = 2e-53
 Identities = 51/123 (41%), Positives = 77/123 (62%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           E L VSE VNR N++ +      R+ +    N  R G          ++IGD++ R + D
Sbjct: 353 EGLQVSEYVNRQNKQNLLYCCELRLLEKGQINVCRKGRPVVLFKKEDVQIGDIFYRPLVD 412

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD ++INR P++H+HS+I+  ++VL   S +SINP+ C+P   DFDGDCLHG+IPQS+ +
Sbjct: 413 GDRVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVGA 472

Query: 517 KAE 525
           + E
Sbjct: 473 RVE 475



 Score = 27.3 bits (59), Expect(3) = 2e-53
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 117 SGLKWLKDTALGKR 158
           SGL+W+KD  LGKR
Sbjct: 312 SGLRWMKDIVLGKR 325


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  118 bits (296), Expect(3) = 2e-53
 Identities = 54/123 (43%), Positives = 81/123 (65%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           ERL +SE +  +N  K+      R+ +    + RR G L R     +L+IGD+  R + D
Sbjct: 352 ERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLND 411

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD ++INR P++H+HSLI+  +KVL   S ++INP++CAPF  DFDGDCLHG++PQS+ +
Sbjct: 412 GDTVLINRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDT 471

Query: 517 KAE 525
           + E
Sbjct: 472 RVE 474



 Score =  110 bits (276), Expect(3) = 2e-53
 Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPAILK 716
            ++L KQL+N Q G            AA L+    + L   QMQQL +FC  ++  PA+ K
Sbjct: 479  VALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAVRK 538

Query: 717  APKLQGPLWTGKQLFQMTLPSNLNYK--SSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
            AP L G  WTGKQL  M LP   +++  SS+V+I +GE++S  G S WL  +D +L Q +
Sbjct: 539  APSLNGCAWTGKQLISMLLPRGFDHECPSSDVYIRDGELISSEG-SFWLRDTDGNLFQSL 597

Query: 891  IRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
            I+      + ++   Q +L E++S+ G SVSL D++L
Sbjct: 598  IKQCQDQVLDFLYIAQEVLCEWLSMRGLSVSLSDLYL 634



 Score = 28.9 bits (63), Expect(3) = 2e-53
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 105 NSHHSGLKWLKDTALGKR 158
           +S  SGL+W+KD  LGKR
Sbjct: 307 SSSSSGLRWIKDVVLGKR 324


>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
            [Cicer arietinum]
          Length = 1474

 Score =  125 bits (313), Expect(3) = 2e-53
 Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
 Frame = +3

Query: 528  SKYMSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSEIPMPA 707
            ++ ++L KQL+N Q G            AA+LL    + L  YQMQQL + CS ++  PA
Sbjct: 477  NELVALDKQLINGQSGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQLQMHCSRKLIPPA 536

Query: 708  ILKAPKLQGPLWTGKQLFQMTLPSNLNY--KSSEVFISEGEILSCSGTSKWLSQSDSSLM 881
            I+KAP      W+GKQLF M +PS+ +Y   S  VF+ +GE++SCS  S WL  SD+++ 
Sbjct: 537  IVKAPSSNTSCWSGKQLFSMLMPSSFDYAFPSDGVFVCDGELISCSEASGWLRDSDNNVF 596

Query: 882  QKIIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            Q ++       +  +   Q  L E++S++GFSVSL D++L+ ++     MI +I+
Sbjct: 597  QSLVEHFQGKTLDILHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIS 651



 Score =  105 bits (263), Expect(3) = 2e-53
 Identities = 51/123 (41%), Positives = 77/123 (62%)
 Frame = +1

Query: 157 ERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITD 336
           E L VSE VNR N++ +      R+ +    N  R G          ++IGD++ R + D
Sbjct: 353 EGLQVSEYVNRQNKQNLLYCCELRLLEKGQINVCRKGRPVVLFKKEDVQIGDIFYRPLVD 412

Query: 337 GDLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHS 516
           GD ++INR P++H+HS+I+  ++VL   S +SINP+ C+P   DFDGDCLHG+IPQS+ +
Sbjct: 413 GDRVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVGA 472

Query: 517 KAE 525
           + E
Sbjct: 473 RVE 475



 Score = 27.3 bits (59), Expect(3) = 2e-53
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 117 SGLKWLKDTALGKR 158
           SGL+W+KD  LGKR
Sbjct: 312 SGLRWMKDIVLGKR 325


>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1386

 Score =  117 bits (293), Expect(3) = 2e-53
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 3/173 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS--EIPMPAI 710
            + L++QLLN+Q G            AA  LTS+ I L+  + QQL + CSS    PMP++
Sbjct: 415  VGLNRQLLNAQDGRSLVSLTHDSLAAAHQLTSADILLQKAEFQQLQMLCSSISSTPMPSV 474

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYKSSE-VFISEGEILSCSGTSKWLSQSDSSLMQK 887
            +K+   QGPLWTGKQLF + LPS +N    + + I + E+L+CS  S WL  + SSL   
Sbjct: 475  IKSANSQGPLWTGKQLFGLLLPSGMNISFDQNLHIKDSEVLTCSSGSLWLQNNTSSLFSV 534

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            + ++    A+ ++   Q +L EF+++ G SVSL D++L  ++    K+  +++
Sbjct: 535  MFKEYGRKALQFLSSTQDVLCEFLTIRGLSVSLSDLYLFSDHYSRRKLSEEVH 587



 Score =  115 bits (289), Expect(3) = 2e-53
 Identities = 58/122 (47%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDG 339
           L VSE V+ +N   I  + N H +TK +    RRNG L     A++L+IGD+  R + DG
Sbjct: 290 LVVSEQVSYYNFETINLKCNLHLLTKEVLL-VRRNGKLIFVRKANKLQIGDIAYRLLQDG 348

Query: 340 DLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSK 519
           DL+++NR P++H+HSL++   K+L   SA+SINP+ C PF  DFDGDCLHG++PQS+ S+
Sbjct: 349 DLVLVNRPPSVHQHSLVALSAKLLPVHSAVSINPLCCDPFKGDFDGDCLHGYVPQSIQSR 408

Query: 520 AE 525
            E
Sbjct: 409 VE 410



 Score = 25.0 bits (53), Expect(3) = 2e-53
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 93  GESQNSHHS-GLKWLKDTALGKR 158
           GES  S  + G KWLKD  L KR
Sbjct: 238 GESSTSTDTYGTKWLKDIILSKR 260


>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
          Length = 1598

 Score =  120 bits (301), Expect(3) = 4e-53
 Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDG 339
           L VSE V+ +N   I  + N H +TK +    RRNG L     A+QL+IGD+  R + DG
Sbjct: 310 LVVSEQVSSYNFETINLKCNLHLLTKEVLL-VRRNGNLIFVRKANQLEIGDIAYRLLQDG 368

Query: 340 DLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSK 519
           DL+++NR P++H+HSLI+   K+L+T+SA+SINP+ C PF  DFDGDCLHG+IPQ L S+
Sbjct: 369 DLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSR 428

Query: 520 AE 525
            E
Sbjct: 429 IE 430



 Score =  112 bits (280), Expect(3) = 4e-53
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSE--IPMPAI 710
            +SLS QLLN Q G            AA  LT++ +FLE  + QQL +  SS    PMP++
Sbjct: 435  VSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSV 494

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQK 887
             K+   QGPLWTGKQLF M LP  +N     ++ I + E+L+CS  S WL  + SSL   
Sbjct: 495  FKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSV 554

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            + ++    A+ ++   Q +L EF+++ G SVSL D++L  ++    K+  +++
Sbjct: 555  MFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVH 607



 Score = 24.3 bits (51), Expect(3) = 4e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 268 GIKWLKDIILSKR 280


>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
            distachyon]
          Length = 1470

 Score =  122 bits (305), Expect(3) = 4e-53
 Identities = 68/173 (39%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS--EIPMPAI 710
            +SLS QLLN Q G            AA LLTSS + L   + QQL + C S    P+P++
Sbjct: 500  VSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSGVLLNKTEFQQLQMLCVSLSPTPVPSV 559

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYKSS-EVFISEGEILSCSGTSKWLSQSDSSLMQK 887
            +K+   QGPLWTGKQLF M LPS +N+    ++ I + E+L+CSG S WL  + S L   
Sbjct: 560  IKSINPQGPLWTGKQLFGMLLPSGMNFSPDPKLHIKDSEVLACSGGSFWLQNNTSGLFSV 619

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            + +     A+ ++   Q ML EF+++ G SVSL DI+L  ++    K   ++N
Sbjct: 620  LFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYLFSDHYSRRKFAEEVN 672



 Score =  111 bits (278), Expect(3) = 4e-53
 Identities = 57/122 (46%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDG 339
           L V E V+ +N + I  + N H + K L    RRNG L      +QL+IGD+  R + DG
Sbjct: 375 LFVPEHVSIYNFKSINLKCNLHLLAKELLI-ARRNGKLIYVRKENQLEIGDIVYRPLQDG 433

Query: 340 DLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSK 519
           DLI++NR P++H+HSLI+   K+L  +S ++INP+ CAP   DFDGDCLHG++PQS+ S+
Sbjct: 434 DLILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFDGDCLHGYVPQSIGSR 493

Query: 520 AE 525
            E
Sbjct: 494 VE 495



 Score = 23.5 bits (49), Expect(3) = 4e-53
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G KWLKD  L KR
Sbjct: 334 GTKWLKDAILSKR 346


>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
          Length = 1407

 Score =  120 bits (301), Expect(3) = 4e-53
 Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDG 339
           L VSE V+ +N   I  + N H +TK +    RRNG L     A+QL+IGD+  R + DG
Sbjct: 337 LVVSEQVSSYNFETINLKCNLHLLTKEVLL-VRRNGNLIFVRKANQLEIGDIAYRLLQDG 395

Query: 340 DLIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSK 519
           DL+++NR P++H+HSLI+   K+L+T+SA+SINP+ C PF  DFDGDCLHG+IPQ L S+
Sbjct: 396 DLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYIPQCLQSR 455

Query: 520 AE 525
            E
Sbjct: 456 IE 457



 Score =  112 bits (280), Expect(3) = 4e-53
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 3/173 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSSE--IPMPAI 710
            +SLS QLLN Q G            AA  LT++ +FLE  + QQL +  SS    PMP++
Sbjct: 462  VSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQMLSSSISLTPMPSV 521

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQK 887
             K+   QGPLWTGKQLF M LP  +N     ++ I + E+L+CS  S WL  + SSL   
Sbjct: 522  FKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSLFSV 581

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHLAHNNLQ*LKMIYQIN 1046
            + ++    A+ ++   Q +L EF+++ G SVSL D++L  ++    K+  +++
Sbjct: 582  MFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRRKLSEEVH 634



 Score = 24.3 bits (51), Expect(3) = 4e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 295 GIKWLKDIILSKR 307


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score =  116 bits (291), Expect(3) = 6e-53
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS-EIPMPAIL 713
            +SL  QLLN Q G            AA LLTS+ +FL+  ++QQL + C S   P PA++
Sbjct: 490  VSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVI 549

Query: 714  KAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
            K+   QG LWTGKQLF M LPS +N+   +E+ I + E+L+CS  S WL  + S L   +
Sbjct: 550  KSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNNTSGLFSVM 609

Query: 891  IRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
             +     A+ ++   Q +L EF+++ G SVSL D+++
Sbjct: 610  FKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYM 646



 Score =  115 bits (287), Expect(3) = 6e-53
 Identities = 57/121 (47%), Positives = 76/121 (62%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGD 342
           L VSE V+ +N +      N  +        RRNG L     A QL+IGD+  R + DGD
Sbjct: 365 LVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGD 424

Query: 343 LIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSKA 522
           +I+INR P++H+HSLI+   K+L   S +SINP+ C PF  DFDGDCLHG+IPQS+ S+ 
Sbjct: 425 IILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRV 484

Query: 523 E 525
           E
Sbjct: 485 E 485



 Score = 25.0 bits (53), Expect(3) = 6e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 323 GMKWLKDVVLSKR 335


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
            gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
            D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
            TPA: putative DNA dependent RNA polymerase D largest
            subunit family protein [Zea mays]
            gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
            RNA polymerase D largest subunit family protein [Zea
            mays]
          Length = 1444

 Score =  116 bits (291), Expect(3) = 6e-53
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS-EIPMPAIL 713
            +SL  QLLN Q G            AA LLTS+ +FL+  ++QQL + C S   P PA++
Sbjct: 490  VSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVI 549

Query: 714  KAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
            K+   QG LWTGKQLF M LPS +N+   +E+ I + E+L+CS  S WL  + S L   +
Sbjct: 550  KSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNNTSGLFSVM 609

Query: 891  IRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
             +     A+ ++   Q +L EF+++ G SVSL D+++
Sbjct: 610  FKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYM 646



 Score =  115 bits (287), Expect(3) = 6e-53
 Identities = 57/121 (47%), Positives = 76/121 (62%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGD 342
           L VSE V+ +N +      N  +        RRNG L     A QL+IGD+  R + DGD
Sbjct: 365 LVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGD 424

Query: 343 LIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSKA 522
           +I+INR P++H+HSLI+   K+L   S +SINP+ C PF  DFDGDCLHG+IPQS+ S+ 
Sbjct: 425 IILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRV 484

Query: 523 E 525
           E
Sbjct: 485 E 485



 Score = 25.0 bits (53), Expect(3) = 6e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 323 GMKWLKDVVLSKR 335


>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
            mays]
          Length = 871

 Score =  116 bits (291), Expect(3) = 6e-53
 Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS-EIPMPAIL 713
            +SL  QLLN Q G            AA LLTS+ +FL+  ++QQL + C S   P PA++
Sbjct: 490  VSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLSVSTPAPAVI 549

Query: 714  KAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQKI 890
            K+   QG LWTGKQLF M LPS +N+   +E+ I + E+L+CS  S WL  + S L   +
Sbjct: 550  KSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQNNTSGLFSVM 609

Query: 891  IRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
             +     A+ ++   Q +L EF+++ G SVSL D+++
Sbjct: 610  FKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYM 646



 Score =  115 bits (287), Expect(3) = 6e-53
 Identities = 57/121 (47%), Positives = 76/121 (62%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGD 342
           L VSE V+ +N +      N  +        RRNG L     A QL+IGD+  R + DGD
Sbjct: 365 LVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGD 424

Query: 343 LIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSKA 522
           +I+INR P++H+HSLI+   K+L   S +SINP+ C PF  DFDGDCLHG+IPQS+ S+ 
Sbjct: 425 IILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSIRSRV 484

Query: 523 E 525
           E
Sbjct: 485 E 485



 Score = 25.0 bits (53), Expect(3) = 6e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 323 GMKWLKDVVLSKR 335


>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
           [Setaria italica] gi|514785102|ref|XP_004970757.1|
           PREDICTED: DNA-directed RNA polymerase D subunit 1-like
           isoform X4 [Setaria italica]
          Length = 1451

 Score =  115 bits (289), Expect(3) = 9e-53
 Identities = 58/121 (47%), Positives = 78/121 (64%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGD 342
           L VSE V+ +N   I    N  +        RRNG L     A+QL++GD+  R + DGD
Sbjct: 365 LVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGD 424

Query: 343 LIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSKA 522
           LI+INR P++H+HSLI+   K+L  +S +SINP+ C PF  DFDGDCLHG+IPQS+ S+ 
Sbjct: 425 LILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRI 484

Query: 523 E 525
           E
Sbjct: 485 E 485



 Score =  115 bits (287), Expect(3) = 9e-53
 Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS--EIPMPAI 710
            +SL +QLLN Q G            AA LLTS+ +FL+  ++QQL + C S    P+PAI
Sbjct: 490  VSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAI 549

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQK 887
            +K+   +G LWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   
Sbjct: 550  IKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSI 609

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
            + +     A+ ++   Q +L EF+++ G SVSL D+++
Sbjct: 610  MFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYM 647



 Score = 25.0 bits (53), Expect(3) = 9e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 323 GMKWLKDAVLSKR 335


>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
           [Setaria italica]
          Length = 1450

 Score =  115 bits (289), Expect(3) = 9e-53
 Identities = 58/121 (47%), Positives = 78/121 (64%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGD 342
           L VSE V+ +N   I    N  +        RRNG L     A+QL++GD+  R + DGD
Sbjct: 364 LVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGD 423

Query: 343 LIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSKA 522
           LI+INR P++H+HSLI+   K+L  +S +SINP+ C PF  DFDGDCLHG+IPQS+ S+ 
Sbjct: 424 LILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRI 483

Query: 523 E 525
           E
Sbjct: 484 E 484



 Score =  115 bits (287), Expect(3) = 9e-53
 Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS--EIPMPAI 710
            +SL +QLLN Q G            AA LLTS+ +FL+  ++QQL + C S    P+PAI
Sbjct: 489  VSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAI 548

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQK 887
            +K+   +G LWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   
Sbjct: 549  IKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSI 608

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
            + +     A+ ++   Q +L EF+++ G SVSL D+++
Sbjct: 609  MFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYM 646



 Score = 25.0 bits (53), Expect(3) = 9e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 322 GMKWLKDAVLSKR 334


>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
           [Setaria italica]
          Length = 1362

 Score =  115 bits (289), Expect(3) = 9e-53
 Identities = 58/121 (47%), Positives = 78/121 (64%)
 Frame = +1

Query: 163 LTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGD 342
           L VSE V+ +N   I    N  +        RRNG L     A+QL++GD+  R + DGD
Sbjct: 276 LVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGD 335

Query: 343 LIIINRTPTLHRHSLISFKIKVLNTESAISINPIVCAPFGADFDGDCLHGFIPQSLHSKA 522
           LI+INR P++H+HSLI+   K+L  +S +SINP+ C PF  DFDGDCLHG+IPQS+ S+ 
Sbjct: 336 LILINRPPSVHQHSLIALSTKILPIQSVVSINPLCCMPFLGDFDGDCLHGYIPQSIRSRI 395

Query: 523 E 525
           E
Sbjct: 396 E 396



 Score =  115 bits (287), Expect(3) = 9e-53
 Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
 Frame = +3

Query: 537  MSLSKQLLNSQCGXXXXXXXXXXXXAAFLLTSSHIFLEAYQMQQLHLFCSS--EIPMPAI 710
            +SL +QLLN Q G            AA LLTS+ +FL+  ++QQL + C S    P+PAI
Sbjct: 401  VSLHQQLLNMQDGRSLVSLTHDSLAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAI 460

Query: 711  LKAPKLQGPLWTGKQLFQMTLPSNLNYK-SSEVFISEGEILSCSGTSKWLSQSDSSLMQK 887
            +K+   +G LWTGKQ F M LPS +N+   S++ I + E+L+CS  S WL  S + L   
Sbjct: 461  IKSMNFEGSLWTGKQFFSMLLPSGMNFSCDSKLHIIDSEVLTCSSGSSWLQNSTTGLFSI 520

Query: 888  IIRDSPSSAVHYIGCCQSMLNEFISLSGFSVSLLDIHL 1001
            + +     A+ ++   Q +L EF+++ G SVSL D+++
Sbjct: 521  MFKQYGRKALDFLSSAQEVLCEFLTMRGLSVSLSDLYM 558



 Score = 25.0 bits (53), Expect(3) = 9e-53
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 120 GLKWLKDTALGKR 158
           G+KWLKD  L KR
Sbjct: 234 GMKWLKDAVLSKR 246