BLASTX nr result

ID: Ephedra28_contig00023626 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00023626
         (1170 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   229   2e-57
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   206   1e-50
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              201   4e-49
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   201   4e-49
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   201   5e-49
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   199   1e-48
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   199   1e-48
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   199   2e-48
ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [S...   199   2e-48
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   198   3e-48
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   197   9e-48
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]           197   9e-48
ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polyme...   195   3e-47
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   195   3e-47
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps...   195   3e-47
ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polyme...   195   3e-47
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   194   4e-47
ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group] g...   194   4e-47
sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA ...   194   4e-47
gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japo...   194   4e-47

>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  229 bits (584), Expect = 2e-57
 Identities = 133/323 (41%), Positives = 180/323 (55%), Gaps = 4/323 (1%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFFSTQG RS ADEIA GDFDGD+YW+ TN  +L  +K  P W               ++
Sbjct: 677  IFFSTQGPRSAADEIANGDFDGDMYWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEY 736

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
             P++LE  LFD FL  RF PS    +AA+SW+ YMDRLLT     ++E   L +KML L 
Sbjct: 737  SPDELETELFDLFLESRFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLA 796

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSN 541
            D+YY+A+DA K+G K+E+P +L+ ++ PH M           Y STS+LG++YDL   + 
Sbjct: 797  DLYYEAVDAPKSGKKVEVPKDLKPERYPHFMERTYQ------YTSTSILGQIYDLVASAQ 850

Query: 542  SDDIDETAKKTGDIVMLPDFLEETNKKTL--WMKHYEIYRSEMSNAMDSPD--SSRANDI 709
             D   E      DI +LP FLEE     +  W   Y  YR EM+ A+ S D   S A+++
Sbjct: 851  MDVPCE------DIELLPCFLEEVEPSGMEKWKGLYAQYRDEMNKALSSTDQKKSNADEV 904

Query: 710  XXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALC 889
                      A   +E ++ R +I+ EA  IY + Y YA+   D+ KC FAW VAG ALC
Sbjct: 905  IQNYKKILYGAQEYEERTRPREEIFREACEIYAISYFYAKEKSDIAKCGFAWKVAGCALC 964

Query: 890  EIYFEKHHKNPILISASKLYSIL 958
            E++  K  KN I   +S L  +L
Sbjct: 965  ELHALKQKKNSITCLSSVLQELL 987


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  206 bits (524), Expect = 1e-50
 Identities = 123/327 (37%), Positives = 176/327 (53%), Gaps = 8/327 (2%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXX-TD 178
            IFFS +G RS ADE+ GGDFDGDLYWV  N  +L+ YK    W               +D
Sbjct: 1090 IFFSCKGPRSIADEMGGGDFDGDLYWVSRNPQLLEWYKPSEPWIEASISTKKNPSRCPSD 1149

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
              PEDLE  LF  FLT RF PS     AA++W+A+MD  LT   +   E + + EK+L L
Sbjct: 1150 HSPEDLEDVLFRSFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQL 1209

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            VD+YY ALDA+K G K+++P EL+    PH M  +        Y STS+LG +Y+   + 
Sbjct: 1210 VDLYYTALDAAKKGVKVDVPKELKVSCFPHYMGKNRS------YPSTSILGSIYNRVDEH 1263

Query: 539  NSDDIDETAKKTGDIVMLPDFLEETNKKTL---WMKHYEIYRSEMSNAMDSPDSSRAND- 706
             ++D     +   ++  LP F E          W + +  YR EM++A+D  D    N  
Sbjct: 1264 QTED-----RSLKEVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQS 1318

Query: 707  ---IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAG 877
               +          A+  +ES +   +IY+EA AIY V YD+A+ +G+V+ C FAW VAG
Sbjct: 1319 ADVVIRKYRKILYEANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAG 1378

Query: 878  EALCEIYFEKHHKNPILISASKLYSIL 958
            +ALC+++   +++    I +S L  IL
Sbjct: 1379 KALCQLHARNNNERFCTIVSSVLMEIL 1405


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  201 bits (512), Expect = 4e-49
 Identities = 120/308 (38%), Positives = 166/308 (53%), Gaps = 6/308 (1%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFF  +G RS ADE+A  DFDGD+YWV  N+ +L+ ++    W              TDF
Sbjct: 615  IFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDF 674

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
             P++LE  LF  FLT RF  S+  G AA++W+ +MDRLLT     S E + L  KML L 
Sbjct: 675  SPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELT 734

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSN 541
            DIYY ALDA K+G K+ +  EL+A+K PH M  +S       Y STS+LG++YD      
Sbjct: 735  DIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESS------YHSTSILGQIYDA----- 783

Query: 542  SDDIDETAKKTGDIVMLPDF-LEETNKKTL--WMKHYEIYRSEMSNAMDSPDSSR---AN 703
             +      + T +I  LP F ++   +  L  W   Y+ YRSEM+ A+     ++   A 
Sbjct: 784  VESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAA 843

Query: 704  DIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEA 883
            ++          A   +ES +N  DI+DEA AIY V Y++  +   V  C F W VAG A
Sbjct: 844  EVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRA 903

Query: 884  LCEIYFEK 907
            LC++Y  K
Sbjct: 904  LCKLYTVK 911


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  201 bits (512), Expect = 4e-49
 Identities = 120/308 (38%), Positives = 166/308 (53%), Gaps = 6/308 (1%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFF  +G RS ADE+A  DFDGD+YWV  N+ +L+ ++    W              TDF
Sbjct: 629  IFFPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDF 688

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
             P++LE  LF  FLT RF  S+  G AA++W+ +MDRLLT     S E + L  KML L 
Sbjct: 689  SPDELEHELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELT 748

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSN 541
            DIYY ALDA K+G K+ +  EL+A+K PH M  +S       Y STS+LG++YD      
Sbjct: 749  DIYYDALDAPKSGMKVNVSKELKAEKFPHFMGRESS------YHSTSILGQIYDA----- 797

Query: 542  SDDIDETAKKTGDIVMLPDF-LEETNKKTL--WMKHYEIYRSEMSNAMDSPDSSR---AN 703
             +      + T +I  LP F ++   +  L  W   Y+ YRSEM+ A+     ++   A 
Sbjct: 798  VESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAA 857

Query: 704  DIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEA 883
            ++          A   +ES +N  DI+DEA AIY V Y++  +   V  C F W VAG A
Sbjct: 858  EVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRA 917

Query: 884  LCEIYFEK 907
            LC++Y  K
Sbjct: 918  LCKLYTVK 925


>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  201 bits (511), Expect = 5e-49
 Identities = 127/321 (39%), Positives = 174/321 (54%), Gaps = 10/321 (3%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFFST+G RS A EIA GDFDGD+YWV  N+ ++  Y     W              ++F
Sbjct: 698  IFFSTKGPRSAATEIANGDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEF 757

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
              ++LE  LF QFL  +   +N +  AA+SW+A+MDRLLT       +   L  KML L+
Sbjct: 758  SADELEYELFRQFLEAKSKGANMS-LAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLI 816

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDSN 541
            DIYY ALDA K+G K+ +P+ L+A K PH M   + C+    Y STS+LG++YD  +DS 
Sbjct: 817  DIYYDALDAPKSGKKVSIPHYLKANKFPHYMEKGNSCS----YHSTSILGQIYD-HVDSY 871

Query: 542  SDD---IDETAKKTGDIVMLPDFLEETNKK--TLWMKHYEIYRSEMSNAMDSPDSSR--- 697
             D+   I E +K       LP F  E  ++  TLW   YE Y+ +M+ AM+     R   
Sbjct: 872  PDEDLCITEISK-------LPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITS 924

Query: 698  ANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAG 877
             N++          A   +++ +   DI+DEA AIY V YD A+    + KC FAW VAG
Sbjct: 925  CNEVIKKYKMLLYGAVEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAG 984

Query: 878  EALCEIY--FEKHHKNPILIS 934
             ALC I+  + K    PIL S
Sbjct: 985  SALCRIHAMYRKEKDLPILPS 1005


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  199 bits (507), Expect = 1e-48
 Identities = 129/325 (39%), Positives = 186/325 (57%), Gaps = 6/325 (1%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFF  +G RS ADE++GGDFDGD+++V  N  +L+ +K    W              ++F
Sbjct: 562  IFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEF 621

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
              E+LE  LF  FL  RF PS+T G AA+SW+A MDRLLT     ++E   + E + LL+
Sbjct: 622  SDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLI 681

Query: 362  DIYYKALDASKTGS-KIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            DIYY ALDA K G  +IE+P  L+A+  PH M      N    Y STS+LG++YD K+ +
Sbjct: 682  DIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGK----NEKKTYRSTSILGKIYD-KVKA 736

Query: 539  NSDDIDETAKKTGDIVMLPDFLEETNKKTL--WMKHYEIYRSEMSNAMDSPDSS--RAND 706
              +D+D     + D+  LP F +E ++  L  W + Y  YR EM NA+ + + S  +AN+
Sbjct: 737  -YEDMD---LSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESNDKANE 792

Query: 707  IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 886
            +          A   + S +   +I++EA A+YQV Y++A+S G V  C FAW VAG AL
Sbjct: 793  VIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLAL 852

Query: 887  CEIYFEKHH-KNPILISASKLYSIL 958
            C +Y  K+  + P++ S S L  IL
Sbjct: 853  CTLYVLKNQGERPMICSPSALKGIL 877


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  199 bits (507), Expect = 1e-48
 Identities = 129/325 (39%), Positives = 186/325 (57%), Gaps = 6/325 (1%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFF  +G RS ADE++GGDFDGD+++V  N  +L+ +K    W              ++F
Sbjct: 584  IFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEF 643

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
              E+LE  LF  FL  RF PS+T G AA+SW+A MDRLLT     ++E   + E + LL+
Sbjct: 644  SDEELEVELFKLFLRNRFQPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLI 703

Query: 362  DIYYKALDASKTGS-KIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            DIYY ALDA K G  +IE+P  L+A+  PH M      N    Y STS+LG++YD K+ +
Sbjct: 704  DIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGK----NEKKTYRSTSILGKIYD-KVKA 758

Query: 539  NSDDIDETAKKTGDIVMLPDFLEETNKKTL--WMKHYEIYRSEMSNAMDSPDSS--RAND 706
              +D+D     + D+  LP F +E ++  L  W + Y  YR EM NA+ + + S  +AN+
Sbjct: 759  -YEDMD---LSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESNDKANE 814

Query: 707  IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 886
            +          A   + S +   +I++EA A+YQV Y++A+S G V  C FAW VAG AL
Sbjct: 815  VIRKYKEFLYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLAL 874

Query: 887  CEIYFEKHH-KNPILISASKLYSIL 958
            C +Y  K+  + P++ S S L  IL
Sbjct: 875  CTLYVLKNQGERPMICSPSALKGIL 899


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  199 bits (506), Expect = 2e-48
 Identities = 129/327 (39%), Positives = 171/327 (52%), Gaps = 8/327 (2%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXX-TD 178
            IFFS +G RS ADE+ GGDFDGDLYWV  N  +L+ +K    W               ++
Sbjct: 483  IFFSCKGPRSVADEMGGGDFDGDLYWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSE 542

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
              P  +E  L   FL  RF PS     A++SW+A MDRLL    + + E   +   ML L
Sbjct: 543  LLPNHIEDALIKLFLKTRFEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRL 602

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            VD+YY+ALDA K G K+ +P EL++   PH M   +       Y STS+LG +YD     
Sbjct: 603  VDLYYEALDAPKKGGKVVVPGELKSNLFPHYMERVNS------YKSTSILGLIYDTVNAY 656

Query: 539  NSDD--IDETAKKTGDIVMLPDFLEETNKKTLWMKHYEIYRSEMSNAMDSPDSSRAND-- 706
             ++D  I E  K     V +P   EE  KK  W +HY+ YRSEMS+AM   D    N+  
Sbjct: 657  QAEDASIKEVKKLPMFDVEVP---EECLKK--WREHYQHYRSEMSSAMQDDDRDSKNNAA 711

Query: 707  ---IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAG 877
               +          A+ L+ S++   +I+DEA AIY+V YD+A S G V KC FAW VAG
Sbjct: 712  DKVLRKYKEILYGGAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAG 771

Query: 878  EALCEIYFEKHHKNPILISASKLYSIL 958
             ALC+ Y  K     I  S S L  ++
Sbjct: 772  SALCKYYMNKQGARTIEASFSVLKDLV 798


>ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
            gi|241926977|gb|EES00122.1| hypothetical protein
            SORBIDRAFT_03g002800 [Sorghum bicolor]
          Length = 1127

 Score =  199 bits (505), Expect = 2e-48
 Identities = 131/323 (40%), Positives = 172/323 (53%), Gaps = 8/323 (2%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDY-KLQPSWXXXXXXXXXXXXXXTD 178
            IFF T G RS ADE+A  DFDGDLYWV  N  +L+ + K +  W               D
Sbjct: 806  IFFPTCGPRSLADEMANSDFDGDLYWVSRNPQLLEGFTKQRKPWVRRIQPTKTELKKPQD 865

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
            +    LE  LF +FL  RF+PS   G+A+N W+A MDRLLT  V KS E   + +KML L
Sbjct: 866  YTGPKLESLLFHEFLRARFTPSYVLGAASNCWLALMDRLLTGGVPKS-ERQAIKKKMLDL 924

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            VDIYY ALDA K G+KI +P EL+ +K PH M  D   +    Y STS+LG++YD  +  
Sbjct: 925  VDIYYLALDAPKEGNKITVPGELKVKKYPHFMERDEKKS----YTSTSVLGKIYDEVMLK 980

Query: 539  NSDDIDETAKKTGDIVMLPDFLE---ETNKKTLWMKHYEIYRSEMSNAMDSPDSSRAND- 706
             S+ ID   K    IV L  F E     + K  W   Y  Y  E ++     D +  N+ 
Sbjct: 981  ESE-IDPEIK----IVPLSCFTEVKVSEDYKGRWRSLYYQYLRESTDLCKLEDKAEKNNN 1035

Query: 707  ---IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAG 877
               +          A+  ++S + + D+ +EA A+YQVVY+YA S  D+ KC FAW VAG
Sbjct: 1036 YRQLYQEYKRKLYEAEEFEQSPREQLDLLNEACAVYQVVYEYAMSRNDIAKCGFAWKVAG 1095

Query: 878  EALCEIYFEKHHKNPILISASKL 946
             ALC +Y  K   +  L S S L
Sbjct: 1096 RALCRLYTLKRGGDTALCSFSVL 1118


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  198 bits (504), Expect = 3e-48
 Identities = 117/316 (37%), Positives = 166/316 (52%), Gaps = 1/316 (0%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXT-D 178
            +FF  +G RS  DEIAGGDFDGD+Y++  N  +L+ +K    W                D
Sbjct: 676  VFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEQFKPSEPWVSLSPPSKSNSTRKPID 735

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
            F PE+LE+ LFD FL  RF  SN  G AA+SW+  MDR LT    +++E   +  KML L
Sbjct: 736  FSPEELEEELFDMFLKARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSL 795

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            +DIYY ALDA+K G K+ LP+ L+    PH M  D        + STS+LG +YD  + S
Sbjct: 796  IDIYYDALDAAKKGVKVSLPDALKPDIFPHYMERDKK------FKSTSILGIIYDF-VQS 848

Query: 539  NSDDIDETAKKTGDIVMLPDFLEETNKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIXXX 718
             + +    + +   +    D       K      Y+ YR+EM  A+ + D + A+++   
Sbjct: 849  QTAEEHTPSSEISKLQCFEDEPVSEFHKEKCRPWYDNYRAEMIQALSNKDDT-ASEVIEK 907

Query: 719  XXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEALCEIY 898
                   A   ++S K+  ++Y +A A+Y +VYDYA  +  VRKC FAW VAG  LC  Y
Sbjct: 908  YKQEFYGAAGFEDSKKSLEELYPQALALYNIVYDYAIEMKSVRKCGFAWKVAGPVLCRFY 967

Query: 899  FEKHHKNPILISASKL 946
             +K     +L S S L
Sbjct: 968  LKKTGGKALLCSLSML 983


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  197 bits (500), Expect = 9e-48
 Identities = 118/319 (36%), Positives = 167/319 (52%), Gaps = 7/319 (2%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXX-TD 178
            +FF  +G RS  DEIAGGDFDGD+Y++  N  +L+++K    W               + 
Sbjct: 664  VFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQ 723

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
              PE+LE+ LF+ FLT  F  SN  G AA+SW+  MDR L     +++E   + +KML L
Sbjct: 724  LSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLEL 783

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            +DIYY ALDA K G K+ LPN+L+    PH M  D        + STS+LG ++D     
Sbjct: 784  IDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK------FQSTSILGLIFDFVKSQ 837

Query: 539  NSDDIDETAKKTGDIVMLPDFLEE------TNKKTLWMKHYEIYRSEMSNAMDSPDSSRA 700
             +    E    + +I  LP F +E        K  LW   Y+ YR+EM+ AM +     A
Sbjct: 838  TT----EEPSPSSEISKLPCFEDEPVSEFHMQKCRLW---YDNYRTEMTQAMKTDKDESA 890

Query: 701  NDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGE 880
            N++          A   ++S K+  ++Y +A A+Y++VYDYA   G V KCRF W VAG 
Sbjct: 891  NEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRFVWKVAGP 949

Query: 881  ALCEIYFEKHHKNPILISA 937
             LC  Y  K  +   L+ A
Sbjct: 950  VLCRFYLNKKMQEKCLVCA 968


>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
          Length = 339

 Score =  197 bits (500), Expect = 9e-48
 Identities = 118/319 (36%), Positives = 167/319 (52%), Gaps = 7/319 (2%)
 Frame = +2

Query: 2   IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXX-TD 178
           +FF  +G RS  DEIAGGDFDGD+Y++  N  +L+++K    W               + 
Sbjct: 26  VFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQ 85

Query: 179 FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
             PE+LE+ LF+ FLT  F  SN  G AA+SW+  MDR L     +++E   + +KML L
Sbjct: 86  LSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLEL 145

Query: 359 VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
           +DIYY ALDA K G K+ LPN+L+    PH M  D        + STS+LG ++D     
Sbjct: 146 IDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK------FQSTSILGLIFDFVKSQ 199

Query: 539 NSDDIDETAKKTGDIVMLPDFLEE------TNKKTLWMKHYEIYRSEMSNAMDSPDSSRA 700
            +    E    + +I  LP F +E        K  LW   Y+ YR+EM+ AM +     A
Sbjct: 200 TT----EEPSPSSEISKLPCFEDEPVSEFHMQKCRLW---YDNYRTEMTQAMKTDKDESA 252

Query: 701 NDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGE 880
           N++          A   ++S K+  ++Y +A A+Y++VYDYA   G V KCRF W VAG 
Sbjct: 253 NEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAG-VSKCRFVWKVAGP 311

Query: 881 ALCEIYFEKHHKNPILISA 937
            LC  Y  K  +   L+ A
Sbjct: 312 VLCRFYLNKKMQEKCLVCA 330


>ref|XP_006645606.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Oryza
            brachyantha]
          Length = 1004

 Score =  195 bits (496), Expect = 3e-47
 Identities = 120/328 (36%), Positives = 176/328 (53%), Gaps = 11/328 (3%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXX--T 175
            I F T G+RS ADE+A  DFDGD++W+  N  +L+ +K   +W                 
Sbjct: 677  ILFPTTGQRSLADEMANSDFDGDIFWISINPKLLEHFKPSKAWEWEQAITPKEAKQMGPQ 736

Query: 176  DFFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLL 355
            DF   +LE+ LF +FL  RF+PS    +A+N+W+ YMDRLLT  V +S E +L+ EKML 
Sbjct: 737  DFNESELERLLFHEFLKARFAPSYALATASNNWLVYMDRLLTDPVDES-EKELIKEKMLK 795

Query: 356  LVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLD 535
            LVD+YY ALDA K+G K+ +P++L  ++ PH M   S       Y S+S+LG+LYD   D
Sbjct: 796  LVDLYYVALDAPKSGKKVNIPSDLMVKQYPHFMGRSSS------YHSSSILGKLYDKADD 849

Query: 536  SNSDDIDETAKKTGDIVMLPDFLEET---NKKTLWMKHYEIYRSEMS-----NAMDSPDS 691
            +N    D    +   I +LP F E       K LW + Y  Y S+ S      A+D  + 
Sbjct: 850  ANLLRFDNV--QPIGISLLPCFTERVAPPTIKNLWQRRYNEYLSDSSKLLNDKAVDKEEK 907

Query: 692  S-RANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWF 868
            + +  ++          A   +E+ +N  D++ +A AIYQ+VY+ A+      +C FAW 
Sbjct: 908  NMKFEELYKKYKHMLYDASEFEETPRNFGDVFTDACAIYQIVYEKARRENAAARCCFAWN 967

Query: 869  VAGEALCEIYFEKHHKNPILISASKLYS 952
            VAG ALC  Y  K+  + ++ S   L S
Sbjct: 968  VAGRALCHYYALKNEGDTVVCSLPLLRS 995


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  195 bits (496), Expect = 3e-47
 Identities = 121/331 (36%), Positives = 176/331 (53%), Gaps = 12/331 (3%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFFST+G RS A EIA GDFDGD YWV  N  +LK +     W               +F
Sbjct: 783  IFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNF 842

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLT---PIVAKSKEADLLTEKML 352
              E+ E  LF  FL  R  P+ +   A+ +W A MDRLL        +++E   + EK+ 
Sbjct: 843  SAEEREHDLFQTFLETRM-PNYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLF 901

Query: 353  LLVDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDL-- 526
             L+D+YY A+DA K+G+K+ +P  L+  K PH +           Y STS+LGE+YD   
Sbjct: 902  ELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKES------YHSTSVLGEIYDRVE 955

Query: 527  KLDSNSDDIDETAKKTGDIVMLPDFLEETNKKTLWMKHYEIYRSEMSNAMDSPDSSR--- 697
            K  +      E  K +   V +PD         LW + Y  YR EM  A+++   S+   
Sbjct: 956  KFKAEEPAAVEIKKLSAFEVGIPDTCLR-----LWEERYRNYRFEMKEALNTSSESKNDL 1010

Query: 698  ANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAG 877
            A+ +          A  ++ES ++ +D+Y++A AIY V YDYA++IGDVRKC FAW VAG
Sbjct: 1011 ADQVIKKYKQLLYEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAG 1070

Query: 878  EALC----EIYFEKHHKNPILISASKLYSIL 958
             ALC    E++ ++H++  + +S S L+ +L
Sbjct: 1071 AALCKLHAELHAKEHNQKVMAMSPSILHKLL 1101


>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
            gi|482565615|gb|EOA29804.1| hypothetical protein
            CARUB_v10012898mg [Capsella rubella]
          Length = 982

 Score =  195 bits (496), Expect = 3e-47
 Identities = 121/323 (37%), Positives = 168/323 (52%), Gaps = 5/323 (1%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXT-D 178
            +FF  +G RS  DEIAGGDFDGD+Y++  N  +L+ +K    W                 
Sbjct: 671  VFFPQKGPRSLGDEIAGGDFDGDIYFISRNPELLEHFKPSEPWVSLTPPSKSNSARGPCQ 730

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
            F PE+LE+ LF+ FL   F  SN  G AA+SW+  MDR L      + E   + +KML L
Sbjct: 731  FSPEELEEELFEMFLKAGFHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLEL 790

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS 538
            +DIYY ALDA K G+K+ LPNELR    PH M  D        + STS+LG +YD     
Sbjct: 791  IDIYYDALDAPKKGAKVYLPNELRPDIFPHYMERDKK------FKSTSILGLIYDFVQSQ 844

Query: 539  NSDDIDETAKKTGDIVMLPDFLEETNKKTLWMKH----YEIYRSEMSNAMDSPDSSRAND 706
             +    +      +I  LP F E+       MK     Y+ Y+ EM++AM++ D+S  N+
Sbjct: 845  TT----KQPSPPSEINKLPCF-EDEPVSEFHMKECRRWYDEYKDEMTHAMNT-DASNKNE 898

Query: 707  IXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAGEAL 886
            I          A   +ES K+  ++Y +A A+Y +VYD+A   G V +C F W VAG  L
Sbjct: 899  IIERCKEDFYGAASFEESKKSLEELYPQALALYNIVYDHATHAG-VSRCGFVWKVAGPVL 957

Query: 887  CEIYFEKHHKNPILISASKLYSI 955
            C  Y +K H+  ++ S S L  I
Sbjct: 958  CRFYLKKRHEKTLVSSPSVLKEI 980


>ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1068

 Score =  195 bits (495), Expect = 3e-47
 Identities = 130/334 (38%), Positives = 176/334 (52%), Gaps = 15/334 (4%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXX-TD 178
            IFFS +G R+ ADEIAGGDFDGDLYWV  N  +LK YK    W               T+
Sbjct: 745  IFFSCKGPRNVADEIAGGDFDGDLYWVSRNPQLLKWYKPSEPWNEGEVATQKVDSKRPTE 804

Query: 179  FFPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLL 358
               E+L+  +F  FL  RF P   TG AAN+W+A MD+ LT  +  S+E   +  K+L L
Sbjct: 805  LSDEELQAEMFRLFLKNRFQPCFATGEAANNWIALMDKFLT--LGDSQEKKDIMNKILRL 862

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDL--KL 532
            VDIYY ALDA+K G K+E+P +L+  + PH M+   +   +    S+S+LGE+YD   K 
Sbjct: 863  VDIYYIALDAAKKGVKVEVPKDLKVPRFPHYMDKLKEEKTET---SSSILGEIYDGVGKC 919

Query: 533  DSNSDDIDETAK-KTGDIVMLPDFLEETNKKTLWMKHYEIYRSEMSNAMDSPDSSRANDI 709
             +    + E  K    DI  +P+          W K YE YR EMS+AM + +  +A   
Sbjct: 920  QAKLAFLTEIKKLPIFDINQVPEHCLNN-----WRKLYEQYRGEMSSAMKNANKDQAASS 974

Query: 710  XXXXXXXXXXADCL-----------DESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCR 856
                      A              + SSK    I DEA AIY V YDYA +  DV++C 
Sbjct: 975  VIGYYKEVIIATLFLGLKLYDAADFEHSSKPIDAILDEAHAIYHVCYDYAINKRDVQRCS 1034

Query: 857  FAWFVAGEALCEIYFEKHHKNPILISASKLYSIL 958
            FAW VAG+ALCE++ +K  +  + I+ S L  +L
Sbjct: 1035 FAWKVAGKALCELHAKKTGEKWLSIAPSVLQQLL 1068


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  194 bits (494), Expect = 4e-47
 Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 8/316 (2%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            IFF   G RS ADEIAGGDFDGD YWV  +  +L+ ++    W              ++F
Sbjct: 672  IFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIENSVPLDSSVKKPSEF 731

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLT-PIVAKSKEADLLTEKMLLL 358
             PE+LE+ LF  FL  RF PS   G + NSWMA MDRLLT        E + + E ML L
Sbjct: 732  SPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCTNENEKERVKENMLKL 791

Query: 359  VDIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYD-LKLD 535
            +DIYY+ALDA K+G K+++PN+L A+  PH M  D        + STS+LG +YD +++ 
Sbjct: 792  IDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEKDKS------FTSTSILGLIYDEVEIW 845

Query: 536  SNSDDIDETAK-KTGDIVMLPDFLEETNKKTLWMKHYEIYRSEMSNAMDSPDSSRANDIX 712
              +D + E  K    D+ + P  LE+      W   YE YR +M++A++  D S++++  
Sbjct: 846  LENDMVGEIWKLPCFDVEVPPSCLEK------WKTKYEEYRKDMTDALNLKDKSKSHEEA 899

Query: 713  XXXXXXXXXADC-----LDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWFVAG 877
                             ++   K+  DI++EA A+Y V Y+YA    +V++C FAW +AG
Sbjct: 900  AEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAG 959

Query: 878  EALCEIYFEKHHKNPI 925
             AL  +Y  K ++  +
Sbjct: 960  SALTRLYIIKQNEKAL 975


>ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
            gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase
            -like [Oryza sativa Japonica Group]
            gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase
            -like [Oryza sativa Japonica Group]
            gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa
            Japonica Group] gi|215693837|dbj|BAG89036.1| unnamed
            protein product [Oryza sativa Japonica Group]
          Length = 582

 Score =  194 bits (494), Expect = 4e-47
 Identities = 118/326 (36%), Positives = 170/326 (52%), Gaps = 11/326 (3%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            I F T G+RS ADE+A  DFDGD+YWV  N  +L+ +K    W               DF
Sbjct: 258  ILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDF 317

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
               +LE+ LF +FL  RF+PS    +AA +W+ YMDRLLT  + +S E  L+ +KML LV
Sbjct: 318  NESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES-EKKLIEKKMLKLV 376

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS- 538
            D+YY ALDA K G+K+ +P +L  ++ PH M+          Y S+S+LG++YD   D  
Sbjct: 377  DLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPS------YHSSSILGKIYDKAGDPK 430

Query: 539  --NSDDIDETAKKTGDIVMLPDFLEETNK---KTLWMKHYEIYRSEMS-----NAMDSPD 688
               SD++  T+     I  LP F E       K LW   Y  Y ++ S      A +   
Sbjct: 431  PLRSDNVQPTS-----ISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEK 485

Query: 689  SSRANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWF 868
              +  ++          A   +E+ ++  D++ EA AIYQ+ Y+ A+S  +V +C FAW 
Sbjct: 486  KIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWK 545

Query: 869  VAGEALCEIYFEKHHKNPILISASKL 946
            VAG ALC  Y  K+  N ++ S   L
Sbjct: 546  VAGRALCHFYTVKNEGNAVVCSLQLL 571


>sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
          Length = 1183

 Score =  194 bits (494), Expect = 4e-47
 Identities = 118/326 (36%), Positives = 170/326 (52%), Gaps = 11/326 (3%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            I F T G+RS ADE+A  DFDGD+YWV  N  +L+ +K    W               DF
Sbjct: 859  ILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDF 918

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
               +LE+ LF +FL  RF+PS    +AA +W+ YMDRLLT  + +S E  L+ +KML LV
Sbjct: 919  NESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES-EKKLIEKKMLKLV 977

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS- 538
            D+YY ALDA K G+K+ +P +L  ++ PH M+          Y S+S+LG++YD   D  
Sbjct: 978  DLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPS------YHSSSILGKIYDKAGDPK 1031

Query: 539  --NSDDIDETAKKTGDIVMLPDFLEETNK---KTLWMKHYEIYRSEMS-----NAMDSPD 688
               SD++  T+     I  LP F E       K LW   Y  Y ++ S      A +   
Sbjct: 1032 PLRSDNVQPTS-----ISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEK 1086

Query: 689  SSRANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWF 868
              +  ++          A   +E+ ++  D++ EA AIYQ+ Y+ A+S  +V +C FAW 
Sbjct: 1087 KIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWK 1146

Query: 869  VAGEALCEIYFEKHHKNPILISASKL 946
            VAG ALC  Y  K+  N ++ S   L
Sbjct: 1147 VAGRALCHFYTVKNEGNAVVCSLQLL 1172


>gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
          Length = 1148

 Score =  194 bits (494), Expect = 4e-47
 Identities = 118/326 (36%), Positives = 170/326 (52%), Gaps = 11/326 (3%)
 Frame = +2

Query: 2    IFFSTQGKRSGADEIAGGDFDGDLYWVCTNKTVLKDYKLQPSWXXXXXXXXXXXXXXTDF 181
            I F T G+RS ADE+A  DFDGD+YWV  N  +L+ +K    W               DF
Sbjct: 824  ILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLEHFKPSKPWVPAITPNGTKQKGPEDF 883

Query: 182  FPEDLEQYLFDQFLTCRFSPSNTTGSAANSWMAYMDRLLTPIVAKSKEADLLTEKMLLLV 361
               +LE+ LF +FL  RF+PS    +AA +W+ YMDRLLT  + +S E  L+ +KML LV
Sbjct: 884  NESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDES-EKKLIEKKMLKLV 942

Query: 362  DIYYKALDASKTGSKIELPNELRAQKMPHCMNDDSDCNLDDYYMSTSLLGELYDLKLDS- 538
            D+YY ALDA K G+K+ +P +L  ++ PH M+          Y S+S+LG++YD   D  
Sbjct: 943  DLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDRSPS------YHSSSILGKIYDKAGDPK 996

Query: 539  --NSDDIDETAKKTGDIVMLPDFLEETNK---KTLWMKHYEIYRSEMS-----NAMDSPD 688
               SD++  T+     I  LP F E       K LW   Y  Y ++ S      A +   
Sbjct: 997  PLRSDNVQPTS-----ISSLPCFAERDVPPAIKQLWQHRYNEYLADSSLLYAEEADEEEK 1051

Query: 689  SSRANDIXXXXXXXXXXADCLDESSKNRSDIYDEARAIYQVVYDYAQSIGDVRKCRFAWF 868
              +  ++          A   +E+ ++  D++ EA AIYQ+ Y+ A+S  +V +C FAW 
Sbjct: 1052 KIKFQELYEKYKHLLYGASEFEETPRDLDDVFSEACAIYQIAYEKARSANNVARCGFAWK 1111

Query: 869  VAGEALCEIYFEKHHKNPILISASKL 946
            VAG ALC  Y  K+  N ++ S   L
Sbjct: 1112 VAGRALCHFYTVKNEGNAVVCSLQLL 1137


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