BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00023613
         (449 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [A...    57   2e-06
ref|XP_006300685.1| hypothetical protein CARUB_v10019728mg [Caps...    57   3e-06
ref|NP_177063.1| DNA-directed RNA polymerase 1, mitochondrial [A...    56   6e-06
emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA p...    56   6e-06
ref|NP_001185355.1| DNA-directed RNA polymerase 1, mitochondrial...    56   6e-06

>ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
           subsp. lyrata] gi|297334536|gb|EFH64954.1| mitochondrial
           DNA-directed RNA polymerase [Arabidopsis lyrata subsp.
           lyrata]
          Length = 975

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +2

Query: 35  SKTICWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEECDKVQ*ERSL*TF 187
           +K +CWT+ +GLP+VQPY+K    +V+T+LQ L L  E DKV   R +  F
Sbjct: 826 NKAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVAARRQMTAF 876


>ref|XP_006300685.1| hypothetical protein CARUB_v10019728mg [Capsella rubella]
           gi|482569395|gb|EOA33583.1| hypothetical protein
           CARUB_v10019728mg [Capsella rubella]
          Length = 971

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 24/51 (47%), Positives = 34/51 (66%)
 Frame = +2

Query: 35  SKTICWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEECDKVQ*ERSL*TF 187
           +K +CWT+ +GLP+VQPY+     +V+T+LQ L L  E DKVQ  R +  F
Sbjct: 822 NKAVCWTTPLGLPVVQPYRLPGRHLVKTTLQVLTLSRETDKVQTRRQMTAF 872


>ref|NP_177063.1| DNA-directed RNA polymerase 1, mitochondrial [Arabidopsis thaliana]
           gi|3914832|sp|P92969.1|RPOT1_ARATH RecName:
           Full=DNA-directed RNA polymerase 1, mitochondrial;
           Flags: Precursor gi|12323220|gb|AAG51592.1|AC011665_13
           DNA-directed RNA polymerase [Arabidopsis thaliana]
           gi|1742971|emb|CAA70583.1| mitochondrial singel subunit
           DNA-directed RNA polymerase [Arabidopsis thaliana]
           gi|2330566|emb|CAA70210.1| mitochondrial single-subunit
           DNA-dependent RNA polymerase [Arabidopsis thaliana]
           gi|332196752|gb|AEE34873.1| DNA-directed RNA polymerase
           1, mitochondrial [Arabidopsis thaliana]
          Length = 976

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 35  SKTICWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEECDKVQ*ERSL*TF 187
           +  +CWT+ +GLP+VQPY+K    +V+T+LQ L L  E DKV   R +  F
Sbjct: 827 NNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAF 877


>emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Arabidopsis thaliana]
          Length = 976

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 35  SKTICWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEECDKVQ*ERSL*TF 187
           +  +CWT+ +GLP+VQPY+K    +V+T+LQ L L  E DKV   R +  F
Sbjct: 827 NNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAF 877


>ref|NP_001185355.1| DNA-directed RNA polymerase 1, mitochondrial [Arabidopsis thaliana]
           gi|332196753|gb|AEE34874.1| DNA-directed RNA polymerase
           1, mitochondrial [Arabidopsis thaliana]
          Length = 983

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +2

Query: 35  SKTICWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEECDKVQ*ERSL*TF 187
           +  +CWT+ +GLP+VQPY+K    +V+T+LQ L L  E DKV   R +  F
Sbjct: 834 NNAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAF 884