BLASTX nr result
ID: Ephedra28_contig00023506
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra28_contig00023506 (793 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 304 2e-80 ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 301 1e-79 ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 300 3e-79 ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 300 4e-79 emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] 300 4e-79 ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 299 7e-79 emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera] 299 7e-79 gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 298 2e-78 emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] 297 3e-78 gb|EMJ26615.1| hypothetical protein PRUPE_ppa000562mg [Prunus pe... 296 6e-78 ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 296 6e-78 gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 296 7e-78 ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 296 7e-78 ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 295 1e-77 gb|EMJ26140.1| hypothetical protein PRUPE_ppa021500mg [Prunus pe... 295 2e-77 ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 295 2e-77 ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 293 4e-77 gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 293 4e-77 emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 293 5e-77 sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA ... 293 6e-77 >ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] gi|548853371|gb|ERN11375.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda] Length = 1210 Score = 304 bits (779), Expect = 2e-80 Identities = 157/268 (58%), Positives = 197/268 (73%), Gaps = 6/268 (2%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT R+KLSLR SM K+ SN LDVL+YSK PC+LNR++ITLLSTL Sbjct: 642 GYKGVVAVDPTS----RYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTL 697 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D FE+ Q+DA+ L+ +L D E A + L LMS G+N N+L EML GY P SE +L Sbjct: 698 GVQDNVFETKQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFL 757 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKI-KTKLNYDG 537 MMLQ F+ L + KTK+RIF+P GR +MGCLDET L YG+VF++ + I +L+ G Sbjct: 758 SMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFG 817 Query: 538 LNLVEDSDTC----VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRP 705 L+ + +S + V+ GKVIV KNPCLHPGD+R+L A+++P L HM++CVVFPQKG RP Sbjct: 818 LSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRP 877 Query: 706 HPNECSGSDLDGDLYFISWDERLIPPFQ 789 HPNECSGSDLDGD+YF+SWD LIP Q Sbjct: 878 HPNECSGSDLDGDIYFVSWDPMLIPCHQ 905 >ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa] Length = 1133 Score = 301 bits (772), Expect = 1e-79 Identities = 151/267 (56%), Positives = 198/267 (74%), Gaps = 4/267 (1%) Frame = +1 Query: 1 AGYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLST 180 AGYKGVVAVDPT ++ KLSLR SM K++S LDVL++SK PC+LNR++ITLLST Sbjct: 571 AGYKGVVAVDPTSSK----KLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLST 626 Query: 181 LGVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQY 357 LGVPD +FE QR+A+ L+ MLTD +A + L LMS G+N N+L EML GY P +E + Sbjct: 627 LGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPF 686 Query: 358 LMMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDG 537 L MMLQ F+ LL+ +TK+RIF+P GR +MGCLDET +L +G+VF++ + + + YD Sbjct: 687 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDS 746 Query: 538 LNLVED---SDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 ++ + ++KG V+V KNPCLHPGD+R+L+AV++P L HM+DCVVFPQKG RPH Sbjct: 747 SDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPH 806 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 PNECSGSDLDGD+YF+ WD LIP Q Sbjct: 807 PNECSGSDLDGDIYFVCWDPELIPSQQ 833 >ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis] Length = 1132 Score = 300 bits (769), Expect = 3e-79 Identities = 151/267 (56%), Positives = 199/267 (74%), Gaps = 4/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVA DPT ++ KLSLR SM K++S LDVL++SK PC+LNR++I+LLSTL Sbjct: 576 GYKGVVAADPTSSK----KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTL 631 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 G+ DE FE QR+A+ L+ +LTD KA + L LMS G+N N+L E+L GY P +E +L Sbjct: 632 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL 691 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TK+RIF+P GR +MGCLDET +LNYG+VF++++ + + Sbjct: 692 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 751 Query: 541 NLVEDSDT---CVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHP 711 +L S + +++G V+V KNPCLHPGD+RVL+AVN+P L HM+DCVVFPQKG RPHP Sbjct: 752 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 811 Query: 712 NECSGSDLDGDLYFISWDERLIPPFQD 792 NECSGSDLDGD+YF+ WD+ LIPP QD Sbjct: 812 NECSGSDLDGDIYFVCWDDELIPPQQD 838 >ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp. vesca] Length = 1119 Score = 300 bits (768), Expect = 4e-79 Identities = 151/264 (57%), Positives = 195/264 (73%), Gaps = 2/264 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT + KLSLR SM K++S LDVL+ SK PC+LNR++ITLLSTL Sbjct: 563 GYKGVVAVDPTSS----MKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTL 618 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 V D F QR A+ L +LTD KA + L LMS+G++ N+L E+L GY P+ E +L Sbjct: 619 EVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFL 678 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TK+RIF+P GR +MGCLDET +L YG+VF++ + + + +D + Sbjct: 679 SMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDDI 738 Query: 541 NLVEDSDTC-VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNE 717 + D+C +++GKV+V KNPCLHPGD+RVL AVN+P+L HM+DCVVFPQKGHRPHPNE Sbjct: 739 CIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNE 798 Query: 718 CSGSDLDGDLYFISWDERLIPPFQ 789 CSGSDLDGD+YF+ WD LIPP Q Sbjct: 799 CSGSDLDGDIYFVCWDPELIPPKQ 822 >emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida] Length = 775 Score = 300 bits (768), Expect = 4e-79 Identities = 153/267 (57%), Positives = 194/267 (72%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDP KLSLR SMLK++SN LDVL +SK PCYLNR+++TL+STL Sbjct: 251 GYKGVVAVDPYSP----MKLSLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTL 306 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV DE F+ Q +A+ L+ +L D KA + L LMS G+N N+L EML+ GY P +E +L Sbjct: 307 GVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFL 366 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL +T++RIF+PKGR +MGCLDE+ +L YG+VF++ T + Y+ Sbjct: 367 SMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEES 426 Query: 541 NLVEDSDTC----VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + DS + +LKG V+V KNPCLHPGDIRVL+AV++P L HM+DCVVFPQKG RPH Sbjct: 427 HHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPH 486 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 PNECSGSDLDGD+YF+ WD LIPP Q Sbjct: 487 PNECSGSDLDGDIYFVCWDPDLIPPRQ 513 >ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera] Length = 1109 Score = 299 bits (766), Expect = 7e-79 Identities = 153/267 (57%), Positives = 195/267 (73%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT +R KLSLR SM K++S LDVLS+SK PC+LNR++ITLLSTL Sbjct: 559 GYKGVVAVDPTSSR----KLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTL 614 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D FE QR+A+ L+ +L D +A + L LMS G+N N+L EML GY P +E +L Sbjct: 615 GVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFL 674 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TK+RIFVP GR +MGCLDET +L YGEVF++++ + ++ Sbjct: 675 SMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDS 734 Query: 541 NLVEDS----DTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + S D +L+GKV+V KNPCLHPGD+R+L AV++P L HM+DCVVFPQKG RPH Sbjct: 735 LMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPH 794 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 P+ECSGSDLDGD+YF+ WD LIPP Q Sbjct: 795 PDECSGSDLDGDIYFVCWDHDLIPPRQ 821 >emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera] Length = 697 Score = 299 bits (766), Expect = 7e-79 Identities = 153/267 (57%), Positives = 195/267 (73%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT +R KLSLR SM K++S LDVLS+SK PC+LNR++ITLLSTL Sbjct: 103 GYKGVVAVDPTSSR----KLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTL 158 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D FE QR+A+ L+ +L D +A + L LMS G+N N+L EML GY P +E +L Sbjct: 159 GVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFL 218 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TK+RIFVP GR +MGCLDET +L YGEVF++++ + ++ Sbjct: 219 SMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDS 278 Query: 541 NLVEDS----DTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + S D +L+GKV+V KNPCLHPGD+R+L AV++P L HM+DCVVFPQKG RPH Sbjct: 279 LMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPH 338 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 P+ECSGSDLDGD+YF+ WD LIPP Q Sbjct: 339 PDECSGSDLDGDIYFVCWDHDLIPPRQ 365 >gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa] gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa] Length = 1117 Score = 298 bits (762), Expect = 2e-78 Identities = 152/267 (56%), Positives = 193/267 (72%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDP + KLSLR SMLK++SN LDVL +SK PCYLNR+++TLLSTL Sbjct: 561 GYKGVVAVDPYSS----MKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTL 616 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D+ FE Q +A+ L+ +L D KA + L LMS G+N N+L EML+ GY P +E +L Sbjct: 617 GVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFL 676 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL +T+SRIF+P GR +MGCLDE+ +L YG+VF++ T + Y+ Sbjct: 677 SMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEES 736 Query: 541 NLVEDSDTC----VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + DS + +L+G V+V KNPCLHPGDIRVL AV++P L HM+DCVVFPQKG RPH Sbjct: 737 HPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 796 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 PNECSGSDLDGD+YF+ WD L+PP Q Sbjct: 797 PNECSGSDLDGDIYFVCWDPDLVPPRQ 823 >emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera] Length = 654 Score = 297 bits (760), Expect = 3e-78 Identities = 153/267 (57%), Positives = 193/267 (72%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT +R KLSLR SM K++S+ LDVL++SK P +LNR++ITLLSTL Sbjct: 103 GYKGVVAVDPTSSR----KLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTL 158 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D FE QR A+ L+ +L D A + L LMS G+N N+L EML GY P +E +L Sbjct: 159 GVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFL 218 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TK+RIFVP GR +MGCLDET +L YGEVF++++ + ++ Sbjct: 219 SMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDS 278 Query: 541 NLVEDS----DTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + S D +L+GK++V KNPCLHPGD+RVL AVN+P L HM+DCVVFPQKG RPH Sbjct: 279 LMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPH 338 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 PNECSGSDLDGD+YF+ WD LIPP Q Sbjct: 339 PNECSGSDLDGDIYFVCWDRDLIPPQQ 365 >gb|EMJ26615.1| hypothetical protein PRUPE_ppa000562mg [Prunus persica] Length = 1095 Score = 296 bits (758), Expect = 6e-78 Identities = 147/263 (55%), Positives = 192/263 (73%), Gaps = 1/263 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT+++ KL+LR SM K+ SN LDVL++S+ PC+LNR++ITLLSTL Sbjct: 547 GYKGVVAVDPTLSK----KLALRDSMCKYQSNNTKLDVLAWSRYQPCFLNRQLITLLSTL 602 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYL 360 GVPD FE Q +AL LE +L D A++ L ++ G+ ++L EML+ GY P +E +L Sbjct: 603 GVPDLVFEKKQNEALKQLEGVLADPSSALEALEMIFQGEVTDVLKEMLACGYEPDAEPFL 662 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 +MLQAF L++ +TK+RIFVP GR LMGCLDET +L YG+VF++ ++ Sbjct: 663 SLMLQAFCASKLVELRTKTRIFVPNGRSLMGCLDETGTLEYGQVFVQCSQRAVFGGNSNC 722 Query: 541 NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNEC 720 + D +++G V+V KNPCLHPGD+RVL AVN+P L HM+DCVVFPQKG+RPHPNEC Sbjct: 723 SATSSEDNFIVEGNVVVAKNPCLHPGDVRVLWAVNVPALHHMVDCVVFPQKGNRPHPNEC 782 Query: 721 SGSDLDGDLYFISWDERLIPPFQ 789 SGSDLDGD YF+SWD LIPP+Q Sbjct: 783 SGSDLDGDFYFVSWDPDLIPPWQ 805 >ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera] Length = 1121 Score = 296 bits (758), Expect = 6e-78 Identities = 153/267 (57%), Positives = 193/267 (72%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT +R KLSLR SM K++S+ LDVL++SK P +LNR++ITLLSTL Sbjct: 561 GYKGVVAVDPTSSR----KLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTL 616 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D FE QR A+ L+ +L D A + L LMS G+N N+L EML GY P +E +L Sbjct: 617 GVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFL 676 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TK+RIFVP GR +MGCLDET +L YGEVF++++ + ++ Sbjct: 677 SMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDS 736 Query: 541 NLVEDS----DTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + S D +L+GK++V KNPCLHPGD+RVL AVN+P L HM+DCVVFPQKG RPH Sbjct: 737 LMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPH 796 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 PNECSGSDLDGD+YF+ WD LIPP Q Sbjct: 797 PNECSGSDLDGDIYFVCWDRDLIPPQQ 823 >gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao] Length = 1109 Score = 296 bits (757), Expect = 7e-78 Identities = 151/263 (57%), Positives = 193/263 (73%), Gaps = 1/263 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 G+KGVVAVDPT ++ KLSLR SM K++S LDVL++SK PC+LNR++ITLLSTL Sbjct: 565 GFKGVVAVDPTSSK----KLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTL 620 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GVPD FE QR+ + L +LTD KA + L LMS G+N N+L EML GY P +E +L Sbjct: 621 GVPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFL 680 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TKSRIFV GR +MGCLDET +L+YG+VF++V+ +++ + Sbjct: 681 SMMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQRF--- 737 Query: 541 NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNEC 720 +++GKV+V KNPCLHPGD+RVL AVN+P+L HM+DCVVFPQKG RPHPNEC Sbjct: 738 ---------IVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNEC 788 Query: 721 SGSDLDGDLYFISWDERLIPPFQ 789 SGSDLDGD+YF+ WD LIP Q Sbjct: 789 SGSDLDGDIYFVCWDPELIPSKQ 811 >ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus] gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus] Length = 1130 Score = 296 bits (757), Expect = 7e-78 Identities = 154/265 (58%), Positives = 190/265 (71%), Gaps = 3/265 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDP T KLSLR SM KF+S+ LDVL +SK PC+LNR++ITL+STL Sbjct: 570 GYKGVVAVDPYST----IKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTL 625 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV DE FE Q +A+ L+ +LTD KA + L LMS G+N N+L EML GY P E YL Sbjct: 626 GVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYL 685 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ +TKSRIF+P GR +MGCLDET +L YG+VF++++ + + + Sbjct: 686 SMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESF 745 Query: 541 --NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPN 714 N + V++G V V KNPCLHPGD+RVL+AVNIP L HM+DCVVFPQKG RPHPN Sbjct: 746 AFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPN 805 Query: 715 ECSGSDLDGDLYFISWDERLIPPFQ 789 ECSGSDLDGD+YF+ WD LIP Q Sbjct: 806 ECSGSDLDGDIYFVCWDTELIPSRQ 830 >ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp. vesca] Length = 1136 Score = 295 bits (755), Expect = 1e-77 Identities = 152/265 (57%), Positives = 196/265 (73%), Gaps = 5/265 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGV+AVD R KLSLR SMLKFDS+ R+L+V +S S+PC+LNREIITL+STL Sbjct: 582 GYKGVIAVDRNSFR----KLSLRSSMLKFDSDNRMLNVTKWSSSMPCFLNREIITLMSTL 637 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYL 360 GV DE FE+LQ++ L L M DR A+ L +S D NN+L+++L GY P+ E YL Sbjct: 638 GVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKLSGADSNNILVKLLLQGYEPNLEPYL 697 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRV--TKIKTKLNYD 534 MMLQA + +L K++ R++VPKGR+L+GCLDET +LNYG+V++R+ TK + ++ + Sbjct: 698 SMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDETGTLNYGQVYLRITMTKAEQEMGHQ 757 Query: 535 GLNLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIP--ELKHMIDCVVFPQKGHRPH 708 D TC++ GKV+VTKNPCLHPGDIRVLEAV E K+M+DC++FPQKG RPH Sbjct: 758 SFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVGLEEKNMVDCILFPQKGERPH 817 Query: 709 PNECSGSDLDGDLYFISWDERLIPP 783 PNECSG DLDGDL+FISWD+ LIPP Sbjct: 818 PNECSGGDLDGDLFFISWDKSLIPP 842 >gb|EMJ26140.1| hypothetical protein PRUPE_ppa021500mg [Prunus persica] Length = 1104 Score = 295 bits (754), Expect = 2e-77 Identities = 146/263 (55%), Positives = 191/263 (72%), Gaps = 1/263 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT+++ KL+LR SM K+ SN LDVL++S+ PC+LNR++ITLLSTL Sbjct: 556 GYKGVVAVDPTLSK----KLALRNSMCKYQSNNTKLDVLAWSRYQPCFLNRQLITLLSTL 611 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYL 360 GVPD F Q +AL LE +L D +A++ L ++ G+ N+L EML+ GY P +E +L Sbjct: 612 GVPDLVFVKKQNEALKQLEGVLADPSRALEALEMIFQGEVTNVLKEMLACGYEPDAEPFL 671 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 +MLQAF L++ +TK+RIFVP GR LMGCLDET +L YG+VF++ ++ Sbjct: 672 SLMLQAFCASKLVELRTKTRIFVPNGRSLMGCLDETGTLEYGQVFVQCSQRAVFGGNSNS 731 Query: 541 NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNEC 720 + D +++G V+V KNPCLHPGD+RVL AVN+P L HM+DC+VFPQKG+RPHPNEC Sbjct: 732 SATSSEDNFIVEGNVVVAKNPCLHPGDVRVLRAVNVPALHHMVDCIVFPQKGNRPHPNEC 791 Query: 721 SGSDLDGDLYFISWDERLIPPFQ 789 SGSDLDGD YF+SWD LIPP Q Sbjct: 792 SGSDLDGDFYFVSWDPDLIPPRQ 814 >ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine max] gi|571439308|ref|XP_006574822.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Glycine max] gi|571439310|ref|XP_006574823.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X3 [Glycine max] Length = 1125 Score = 295 bits (754), Expect = 2e-77 Identities = 148/260 (56%), Positives = 190/260 (73%), Gaps = 1/260 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDP +KLSLR SM K+DS+ LDVL+ SK PCYLNR++I+LLSTL Sbjct: 572 GYKGVVAVDPKSC----YKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTL 627 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYL 360 G+ D+ FE QR+ + L +LTD KA + L LMS+G+ N+L EML GY P+ E +L Sbjct: 628 GIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFL 687 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL+ + KSRIF+PKGR +MGCLDET +L YG+VF++ + + + D Sbjct: 688 SMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLSDDF 747 Query: 541 NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNEC 720 + ++KGKV+V KNPCLHPGD+RVL+AV++P+L HM+DCVVFPQKG RPHPNEC Sbjct: 748 FSYDLPKNYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNEC 807 Query: 721 SGSDLDGDLYFISWDERLIP 780 SGSDLDGD+YF+ WD LIP Sbjct: 808 SGSDLDGDIYFVCWDHELIP 827 >ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer arietinum] Length = 1126 Score = 293 bits (751), Expect = 4e-77 Identities = 152/262 (58%), Positives = 192/262 (73%), Gaps = 2/262 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT + KLSLR SM K+DS+ LDVL+ SK PCYLNR++ITLLSTL Sbjct: 576 GYKGVVAVDPTSS----VKLSLRKSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLSTL 631 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYL 360 V D FE Q++A+ L +LT+ KA + L LMS+G+ N+L EML GY P+ E +L Sbjct: 632 KVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEPFL 691 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIK-TKLNYDG 537 MMLQ F+ LL+ + K+RIF+PKGR +MG LDET +L YGEVF++ + + + L+Y Sbjct: 692 SMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNRISSLSYGS 751 Query: 538 LNLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNE 717 N + V+ GKV+V KNPCLHPGD+RVL+AV++P L HM+DCVVFPQKGHRPHPNE Sbjct: 752 AN------SLVVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNE 805 Query: 718 CSGSDLDGDLYFISWDERLIPP 783 CSGSDLDGD+YF+ WD LIPP Sbjct: 806 CSGSDLDGDIYFVCWDPELIPP 827 >gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] Length = 1110 Score = 293 bits (751), Expect = 4e-77 Identities = 148/260 (56%), Positives = 192/260 (73%), Gaps = 1/260 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 G+KGVVA+DPT + +KLSLR SM K++S LDVL++SK PC+LNR++ITLLSTL Sbjct: 565 GFKGVVAIDPTSS----WKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTL 620 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GVPD FE QR+ + L +LTD +A + L LMS G+N N+L EML GY P +E +L Sbjct: 621 GVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFL 680 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MML+ F+ LL+ +TK+RIFV KGR +MGCLDET +LNYG+VF++ + +++ + Sbjct: 681 SMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERRF--- 737 Query: 541 NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNEC 720 +++GKVIV KNPCLHPGD+RVL AVN+P+L HM+DCVVFPQKG RPHPNEC Sbjct: 738 ---------IVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNEC 788 Query: 721 SGSDLDGDLYFISWDERLIP 780 SGSDLDGD+YF+ WD LIP Sbjct: 789 SGSDLDGDVYFVCWDPELIP 808 >emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] Length = 1116 Score = 293 bits (750), Expect = 5e-77 Identities = 150/267 (56%), Positives = 192/267 (71%), Gaps = 5/267 (1%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDP + KLSLR SMLK++SN LDVL +SK PCYLNR+++TLLSTL Sbjct: 560 GYKGVVAVDPYSS----MKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTL 615 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGDN-NMLIEMLSSGYCPSSEQYL 360 GV D+ E Q +A+ L+ +L D KA + L LMS G+N N+L EML+ GY P +E +L Sbjct: 616 GVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFL 675 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 MMLQ F+ LL +T++RIF+P GR +MGCLDE+ +L YG+VF++ + + ++ Sbjct: 676 SMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEES 735 Query: 541 NLVEDSDTC----VLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPH 708 + DS + +LKG V+V KNPCLHPGDIRVL AV++P L HM+DCVVFPQKG RPH Sbjct: 736 HPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPH 795 Query: 709 PNECSGSDLDGDLYFISWDERLIPPFQ 789 PNECSGSDLDGD+YF+ WD LIPP Q Sbjct: 796 PNECSGSDLDGDIYFVCWDPDLIPPRQ 822 >sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1 Length = 740 Score = 293 bits (749), Expect = 6e-77 Identities = 152/261 (58%), Positives = 187/261 (71%), Gaps = 1/261 (0%) Frame = +1 Query: 4 GYKGVVAVDPTMTRLRRFKLSLRPSMLKFDSNYRILDVLSYSKSLPCYLNREIITLLSTL 183 GYKGVVAVDPT R+KLSLR SMLKF S+ +DVL+YSK P +LNR++ITLLSTL Sbjct: 201 GYKGVVAVDPTS----RWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTL 256 Query: 184 GVPDENFESLQRDALLHLELMLTDREKAIDFLSLMSSGD-NNMLIEMLSSGYCPSSEQYL 360 GV D FE Q +A+ L M+TD + AI+ + LM G+ N + E+L GY P E YL Sbjct: 257 GVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYL 316 Query: 361 MMMLQAFKDCYLLKHKTKSRIFVPKGRVLMGCLDETASLNYGEVFIRVTKIKTKLNYDGL 540 M+LQ F+ LL+ KTKSRI +PKGR +MGCLDET +L YG+VFIR T G+ Sbjct: 317 SMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATS--------GV 368 Query: 541 NLVEDSDTCVLKGKVIVTKNPCLHPGDIRVLEAVNIPELKHMIDCVVFPQKGHRPHPNEC 720 N D+D + GKV++ KNPCLHPGDIR+L AV++P L HM +CVVFPQ+G RPHPNEC Sbjct: 369 N---DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNEC 425 Query: 721 SGSDLDGDLYFISWDERLIPP 783 SGSDLDGD+YF+SWD LIPP Sbjct: 426 SGSDLDGDIYFVSWDPSLIPP 446