BLASTX nr result
ID: Ephedra28_contig00022341
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra28_contig00022341 (1032 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 285 2e-74 ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul... 285 3e-74 gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] 284 5e-74 ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit... 284 5e-74 ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr... 283 1e-73 ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit... 279 1e-72 ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit... 279 1e-72 ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 278 3e-72 ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 277 6e-72 gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus... 276 1e-71 ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A... 275 2e-71 ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutr... 274 5e-71 ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian... 274 5e-71 ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 273 8e-71 ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 273 8e-71 ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit... 271 2e-70 dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare] 271 2e-70 gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob... 271 4e-70 ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 271 4e-70 ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps... 270 5e-70 >ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer arietinum] Length = 458 Score = 285 bits (730), Expect = 2e-74 Identities = 144/270 (53%), Positives = 189/270 (70%), Gaps = 8/270 (2%) Frame = +2 Query: 224 QSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEG 403 Q L L + +K++ SLVIYKDP +VLNKP G+PVQGG I+ S+D+LA ++L+Y Y + Sbjct: 152 QPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWSLDALAASSLNYDYSQP 211 Query: 404 PRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIG 583 PRLVHRLD+DCSG+LVMGRT+ S +LH++FR+KT + S + T + L+RRYWALVIG Sbjct: 212 PRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDTE-KRILQRRYWALVIG 270 Query: 584 TLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELC 763 + G I +PL KVV D+ S+RI I + S+Q AVT++RV+G S G TWLEL Sbjct: 271 RPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLELS 330 Query: 764 PFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAEE------- 922 P TGRKHQ+RVHCAE LG PI+GDYKYGW AHKKW FD + +E +E Sbjct: 331 PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGHFDLCNLEDSTEELLKEETLPFGL 390 Query: 923 -LNNGSVLSEEPLLHLHCRQISIPNITEAM 1009 LN GS+ + P LHLHC+QI +PNI++A+ Sbjct: 391 NLNKGSISDKHPRLHLHCKQIILPNISQAL 420 >ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula] gi|355501934|gb|AES83137.1| RNA pseudourine synthase [Medicago truncatula] Length = 430 Score = 285 bits (728), Expect = 3e-74 Identities = 143/268 (53%), Positives = 187/268 (69%), Gaps = 8/268 (2%) Frame = +2 Query: 230 LRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPR 409 L L + + +I SLVIYKDP ++VLNKP G+PVQGG I+ S+D++A +L+Y Y + PR Sbjct: 125 LTLTAKQINFIRSLVIYKDPHILVLNKPPGMPVQGGINIKLSLDAVAAQSLNYDYSQPPR 184 Query: 410 LVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTL 589 LVHRLD+DCSG+LVMGRTK S +LLH++FREKT + S+E+ L+RRYWALV+G Sbjct: 185 LVHRLDRDCSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCP 244 Query: 590 NQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPF 769 + G + APL KVV D+ S+RI I S+Q AVT++RVI S +G TWLEL P Sbjct: 245 RRSGGVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPL 304 Query: 770 TGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAEE--------L 925 TGRKHQ+RVHCAE LG PI+GDYKYG AHKKW FD + +E + +E L Sbjct: 305 TGRKHQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSNLEDSTEEHLKEEALPFGLNL 364 Query: 926 NNGSVLSEEPLLHLHCRQISIPNITEAM 1009 N GS+ + P LHLHC+QI +PNI++A+ Sbjct: 365 NKGSISDKHPRLHLHCKQIVLPNISQAL 392 >gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis] Length = 470 Score = 284 bits (726), Expect = 5e-74 Identities = 140/262 (53%), Positives = 184/262 (70%), Gaps = 9/262 (3%) Frame = +2 Query: 251 MKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDK 430 +K+I SL +YKDP ++V+NKP GLPVQGG GI+ S+D LAV LSY Y E PRLVHRLD+ Sbjct: 173 VKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDR 232 Query: 431 DCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRI 610 DCSG+LVMGRT+ SA++LH++FREKT S+++ L+RRYWA VIG+ G I Sbjct: 233 DCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNGLI 292 Query: 611 IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 790 APL KVV D+ S+RI + + S+Q A+T ++VIG S +G TWLEL P TGRKHQ+ Sbjct: 293 SAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRKHQL 352 Query: 791 RVHCAEALGMPILGDYKYGWSAHKKWRPF---DPISKHIESESNAEEL------NNGSVL 943 RVHCAE LG P++GDYKYGW AH+ W+P DP +K IE + L +NGS+ Sbjct: 353 RVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPKRKNLPFGLNMDNGSIS 412 Query: 944 SEEPLLHLHCRQISIPNITEAM 1009 + P LHLHC+Q+ +PNI+ + Sbjct: 413 EKHPRLHLHCKQMVLPNISHVL 434 >ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X2 [Citrus sinensis] Length = 362 Score = 284 bits (726), Expect = 5e-74 Identities = 138/270 (51%), Positives = 191/270 (70%), Gaps = 11/270 (4%) Frame = +2 Query: 251 MKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDK 430 +++I+SL +YKD +IV+NKP G+PVQGG GI++SID LA L+Y Y E PRLVHRLD+ Sbjct: 65 VEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDR 124 Query: 431 DCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRI 610 D SG+LVMGRT+ SA++LH++FREKT S ED + L+R YWALV+GT +G I Sbjct: 125 DSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSKGVI 184 Query: 611 IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 790 APL KVV D+ S+RI + + + S Q AVT ++VI PS +G TWL+L P TGRKHQ+ Sbjct: 185 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQL 244 Query: 791 RVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAE-----------ELNNGS 937 RVHCAE LG PI+GDYKYGW H+KW+ F P + +SN E +L +GS Sbjct: 245 RVHCAEVLGTPIVGDYKYGWQTHRKWKQFHP--SDLSKDSNEEIPKEKTLHFGLDLESGS 302 Query: 938 VLSEEPLLHLHCRQISIPNITEAMDRPDIS 1027 +L ++P LHLHC+++++PN+++A+ + +S Sbjct: 303 ILEKQPRLHLHCKEMTLPNVSQAIQKVQLS 332 >ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina] gi|557524859|gb|ESR36165.1| hypothetical protein CICLE_v10028283mg [Citrus clementina] Length = 494 Score = 283 bits (723), Expect = 1e-73 Identities = 138/266 (51%), Positives = 190/266 (71%), Gaps = 9/266 (3%) Frame = +2 Query: 257 YIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDC 436 +I+SL +YKD +IV+NKP G+PVQGG GI++SID LA L+Y Y E PRLVHRLD+D Sbjct: 199 FIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDS 258 Query: 437 SGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIA 616 SG+LVMGRT+ SA++LH++FREKT S ED + L+R YWALV+GT +G I A Sbjct: 259 SGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISA 318 Query: 617 PLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRV 796 PL KVV D+ S+RI + + + S Q AVT ++VI PS +G TWL+L P TGRKHQ+RV Sbjct: 319 PLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRV 378 Query: 797 HCAEALGMPILGDYKYGWSAHKKWRPFDP--ISKHIESESNAE-------ELNNGSVLSE 949 HCAE LG PI+GDYKYGW H+KW+ F P ++K E+ E +L +GS+L + Sbjct: 379 HCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEK 438 Query: 950 EPLLHLHCRQISIPNITEAMDRPDIS 1027 +P LHLHC+++++PN+++A+ + +S Sbjct: 439 QPGLHLHCKEMTLPNVSQAIQKVQLS 464 >ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X2 [Glycine max] Length = 429 Score = 279 bits (713), Expect = 1e-72 Identities = 140/266 (52%), Positives = 187/266 (70%), Gaps = 8/266 (3%) Frame = +2 Query: 236 LDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLV 415 L + + +I +LVIYKDP ++VLNKP G+PVQGG I++S+D++A A+L+YGY + PRLV Sbjct: 129 LTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLV 188 Query: 416 HRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQ 595 HRLD+DCSG+LVMGRT S ++LH++FREKT + +S+D + L+RRYWALV+G + Sbjct: 189 HRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR-ASDDIGKEKRILQRRYWALVLGCPRR 247 Query: 596 KQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTG 775 +G + A L KVV D+ S+RI I S+Q A+T++RVI S G TWLEL P TG Sbjct: 248 PKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTG 307 Query: 776 RKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFD-PISKHIESESNAEE-------LNN 931 RKHQ+RVHCAE LG PI+GDYKYGW AH+KW FD P + E EE LN Sbjct: 308 RKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLPFGLNLNK 367 Query: 932 GSVLSEEPLLHLHCRQISIPNITEAM 1009 GS+ P LHLHC+Q+ +PNI++A+ Sbjct: 368 GSISENHPRLHLHCKQMVLPNISQAL 393 >ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform X1 [Glycine max] Length = 427 Score = 279 bits (713), Expect = 1e-72 Identities = 140/266 (52%), Positives = 187/266 (70%), Gaps = 8/266 (3%) Frame = +2 Query: 236 LDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLV 415 L + + +I +LVIYKDP ++VLNKP G+PVQGG I++S+D++A A+L+YGY + PRLV Sbjct: 127 LTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLV 186 Query: 416 HRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQ 595 HRLD+DCSG+LVMGRT S ++LH++FREKT + +S+D + L+RRYWALV+G + Sbjct: 187 HRLDRDCSGILVMGRTHTSTTVLHSIFREKTSR-ASDDIGKEKRILQRRYWALVLGCPRR 245 Query: 596 KQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTG 775 +G + A L KVV D+ S+RI I S+Q A+T++RVI S G TWLEL P TG Sbjct: 246 PKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTG 305 Query: 776 RKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFD-PISKHIESESNAEE-------LNN 931 RKHQ+RVHCAE LG PI+GDYKYGW AH+KW FD P + E EE LN Sbjct: 306 RKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLPFGLNLNK 365 Query: 932 GSVLSEEPLLHLHCRQISIPNITEAM 1009 GS+ P LHLHC+Q+ +PNI++A+ Sbjct: 366 GSISENHPRLHLHCKQMVLPNISQAL 391 >ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera] gi|296090438|emb|CBI40257.3| unnamed protein product [Vitis vinifera] Length = 476 Score = 278 bits (711), Expect = 3e-72 Identities = 140/268 (52%), Positives = 190/268 (70%), Gaps = 9/268 (3%) Frame = +2 Query: 251 MKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDK 430 + ++ +L +YKDP +IV+NKP GLPVQGG GI++S+D LA L Y E PRLVHRLD+ Sbjct: 179 INFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDR 238 Query: 431 DCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRI 610 D SG+L+MGRT+ SA++LH++FREKT S+ D + L+RRYWALVIG+ + +G I Sbjct: 239 DSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLI 298 Query: 611 IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 790 APL KVV DD SERI I + S+Q A+T++RVI S +G TWLEL P TGRKHQ+ Sbjct: 299 SAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQL 358 Query: 791 RVHCAEALGMPILGDYKYGWSAHKKWRPF--DPISKHI-ESESNAE------ELNNGSVL 943 RVHCAE LG PI+GDYKYGW AH+KW+ I K++ E+ SN + +L +GS+L Sbjct: 359 RVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSIL 418 Query: 944 SEEPLLHLHCRQISIPNITEAMDRPDIS 1027 ++P LHLHC+Q+ +PN++ A+ +S Sbjct: 419 DKQPHLHLHCKQMVLPNVSLALQNLQLS 446 >ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Brachypodium distachyon] Length = 479 Score = 277 bits (708), Expect = 6e-72 Identities = 142/297 (47%), Positives = 198/297 (66%), Gaps = 9/297 (3%) Frame = +2 Query: 140 EIMRPGMKLYLXXXXXXXXXXXXMSE-KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPS 316 E+M PGM+++L A +L + ++Y++ LVIYKD ++VLNKP Sbjct: 138 EVMEPGMRIHLPVSVAEAEIKKRYETIPAATLHPNKDEIEYLKRLVIYKDSAILVLNKPP 197 Query: 317 GLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLF 496 +P++G + S+D LA AALSYG ++GP+LVHRLD+D SG+L+MGRTKES + LH LF Sbjct: 198 KVPMKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESFTRLHWLF 257 Query: 497 RE-KTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAH 673 K + +S + +RYWALVIGT + +G I APLTKV+ DD +ER+++AH Sbjct: 258 TSVKLARTASPIWNSACESYLQRYWALVIGTPKESEGVISAPLTKVLLDDGKAERVILAH 317 Query: 674 EKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWS 853 + Q+AVT++RV+GP+I GC+W+ELCP TGRKHQ+RVHCAEALG PI+GDYKYGW Sbjct: 318 PSGIDGAQEAVTEYRVMGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 377 Query: 854 AHKKWR-----PFDPISKHIESESNAE--ELNNGSVLSEEPLLHLHCRQISIPNITE 1003 H++W+ F+P + E E+ GSVLS+ PLLHLHCR++ +PNI + Sbjct: 378 VHQRWKQNPQPDFEPFTGEQYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAK 434 >gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris] Length = 432 Score = 276 bits (706), Expect = 1e-71 Identities = 137/266 (51%), Positives = 183/266 (68%), Gaps = 8/266 (3%) Frame = +2 Query: 236 LDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLV 415 L + + +I +LVI+KDP ++VLNKP G+PVQGG I+ S+D +A A L+Y Y E PRLV Sbjct: 132 LTPQQINFIRTLVIHKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLV 191 Query: 416 HRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALVIGTLNQ 595 HRLD+DCSG+LVMGRT+ S ++LH++FREKT + + +D + L+RRYWALV+G Sbjct: 192 HRLDRDCSGILVMGRTQTSTTVLHSIFREKTSR-ALDDTEEEKRILQRRYWALVLGRPRC 250 Query: 596 KQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTG 775 +G + A L KVV D+ S+RI + S+Q A+T++RVI S G TWLEL P TG Sbjct: 251 SKGLVTASLGKVVVDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLELSPLTG 310 Query: 776 RKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAEE--------LNN 931 RKHQ+RVHCAE LG PI+GDYKYGW AH+KW FD + E + +E LNN Sbjct: 311 RKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGNFDLSNVEDSCEEHLKEETLPFGLNLNN 370 Query: 932 GSVLSEEPLLHLHCRQISIPNITEAM 1009 GS+ P LHLHC++I +PNI+EA+ Sbjct: 371 GSISENRPRLHLHCKKIVLPNISEAL 396 >ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda] gi|548850328|gb|ERN08832.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda] Length = 457 Score = 275 bits (703), Expect = 2e-71 Identities = 137/258 (53%), Positives = 184/258 (71%), Gaps = 6/258 (2%) Frame = +2 Query: 251 MKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDK 430 M+YI SL +YKD ++V+NKP GLPVQGG G++ S+D L ++L Y Y E PRLVHRLD+ Sbjct: 162 MEYIRSLEVYKDAAIVVVNKPPGLPVQGGTGVKLSLDVLVASSLKYDYSEVPRLVHRLDQ 221 Query: 431 DCSGVLVMGRTKESASLLHTLFREKTEKFS-SEDPTMFGQKLKRRYWALVIGTLNQKQGR 607 D SG+LVMGRT+ES +LLH++FR+KT S + D LKR+YWALVIG +G Sbjct: 222 DSSGILVMGRTQESTTLLHSIFRDKTCGASFNVDIKNSKIILKRKYWALVIGNPQPSEGL 281 Query: 608 IIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQ 787 I APL+K++ DD SERI ++ + + S + A+T++RV+ S +G TWLEL P TGRKHQ Sbjct: 282 ISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRSSGHGFTWLELYPRTGRKHQ 341 Query: 788 VRVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAE-----ELNNGSVLSEE 952 +RVHCAE LG PILGDYKYGW+AH+KW+PF + E N + +L GSV ++ Sbjct: 342 LRVHCAEVLGTPILGDYKYGWNAHRKWKPFPTLK--FEERLNRKAPFGLDLEGGSVSDKK 399 Query: 953 PLLHLHCRQISIPNITEA 1006 P LHLHCRQ+++PN++ A Sbjct: 400 PRLHLHCRQMTLPNMSLA 417 >ref|XP_006406501.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum] gi|557107647|gb|ESQ47954.1| hypothetical protein EUTSA_v10020633mg [Eutrema salsugineum] Length = 477 Score = 274 bits (700), Expect = 5e-71 Identities = 142/273 (52%), Positives = 187/273 (68%), Gaps = 3/273 (1%) Frame = +2 Query: 218 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYK 397 K +S K++ SLV+YKDP +IVLNKP GL VQGG GI+ SID LA L++G Sbjct: 167 KKESFCCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGTGIKISIDELAATCLTFGKS 226 Query: 398 EGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALV 577 E PRLVHRLD+DCSG+LV+GRT+ +A++LH++FREKT S+ + LKR+Y ALV Sbjct: 227 ESPRLVHRLDRDCSGLLVLGRTQTAATVLHSIFREKTSGASAYSVKKNIKSLKRKYLALV 286 Query: 578 IGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLE 757 IG +++G+I APL KVV DD S+RI + E STQ A+T++RVI S +G TWLE Sbjct: 287 IGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLE 346 Query: 758 LCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAE---ELN 928 L P TGRKHQ+RVHCAE LG PILGDYKYGW AHK PF S + +L+ Sbjct: 347 LRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKSREPFVSSGNTPTKPSLSPFGLDLD 406 Query: 929 NGSVLSEEPLLHLHCRQISIPNITEAMDRPDIS 1027 G V S++P LHLH +QI +PNI++ +++ ++S Sbjct: 407 GGDVSSKQPHLHLHSKQIDLPNISQLLEQLEVS 439 >ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana] gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudouridine synthase 4, mitochondrial; AltName: Full=RNA pseudouridylate synthase 4; AltName: Full=RNA-uridine isomerase 4; Flags: Precursor gi|11994467|dbj|BAB02469.1| unnamed protein product [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1| hypothetical protein [Arabidopsis thaliana] gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4 [Arabidopsis thaliana] Length = 477 Score = 274 bits (700), Expect = 5e-71 Identities = 140/273 (51%), Positives = 188/273 (68%), Gaps = 3/273 (1%) Frame = +2 Query: 218 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYK 397 K +S + K++ SLV+YKDP +IVLNKP GL VQGG GI+ SID LA + L + Sbjct: 167 KKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKS 226 Query: 398 EGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALV 577 E PRLVHRLD+DCSG+LV+ RT+ +A++LH++FREKT S+ + LKR+Y ALV Sbjct: 227 ESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALV 286 Query: 578 IGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLE 757 IG +++G+I APL KVV DD SERI + E STQ A+T++RVI S +G TWLE Sbjct: 287 IGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLE 346 Query: 758 LCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAE---ELN 928 L P TGRKHQ+RVHCAE LG PI+GDYKYGW AHK PF + +S++ +L+ Sbjct: 347 LRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPFGLDLD 406 Query: 929 NGSVLSEEPLLHLHCRQISIPNITEAMDRPDIS 1027 G V S++P LHLH +QI +PNI++ +++ +S Sbjct: 407 GGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVS 439 >ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis sativus] Length = 471 Score = 273 bits (698), Expect = 8e-71 Identities = 133/259 (51%), Positives = 183/259 (70%), Gaps = 8/259 (3%) Frame = +2 Query: 257 YIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDC 436 ++ SLV++KDP ++V+NKP GLPVQGG G+++S+D LA + LSYGY E PRLVHRLD+D Sbjct: 182 FMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDS 241 Query: 437 SGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQK--LKRRYWALVIGTLNQKQGRI 610 SG+L+MGRT S SLLH++FREKT + S + +K L +RYWALVIG+ + +G I Sbjct: 242 SGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLI 301 Query: 611 IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 790 APL K+V DD SE+I++ E Q A+T ++VI S +G TWLELCP TGRKHQ+ Sbjct: 302 TAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQL 360 Query: 791 RVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAE------ELNNGSVLSEE 952 RVHCAE LG PI+GDYKYGW AHK W+PF S +++ + + +GS+ Sbjct: 361 RVHCAEVLGTPIVGDYKYGWQAHKNWKPF--CSNFHKNQGKKQFLPFGLDFESGSIAENS 418 Query: 953 PLLHLHCRQISIPNITEAM 1009 P LHLHC+Q+++P+++ A+ Sbjct: 419 PRLHLHCKQLTLPDVSFAL 437 >ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis sativus] Length = 466 Score = 273 bits (698), Expect = 8e-71 Identities = 133/259 (51%), Positives = 183/259 (70%), Gaps = 8/259 (3%) Frame = +2 Query: 257 YIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDC 436 ++ SLV++KDP ++V+NKP GLPVQGG G+++S+D LA + LSYGY E PRLVHRLD+D Sbjct: 177 FMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDS 236 Query: 437 SGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQK--LKRRYWALVIGTLNQKQGRI 610 SG+L+MGRT S SLLH++FREKT + S + +K L +RYWALVIG+ + +G I Sbjct: 237 SGILIMGRTSTSTSLLHSVFREKTFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLI 296 Query: 611 IAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQV 790 APL K+V DD SE+I++ E Q A+T ++VI S +G TWLELCP TGRKHQ+ Sbjct: 297 TAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVI-KSHHGYTWLELCPLTGRKHQL 355 Query: 791 RVHCAEALGMPILGDYKYGWSAHKKWRPFDPISKHIESESNAE------ELNNGSVLSEE 952 RVHCAE LG PI+GDYKYGW AHK W+PF S +++ + + +GS+ Sbjct: 356 RVHCAEVLGTPIVGDYKYGWQAHKNWKPF--CSNFHKNQGKKQFLPFGLDFESGSIAENN 413 Query: 953 PLLHLHCRQISIPNITEAM 1009 P LHLHC+Q+++P+++ A+ Sbjct: 414 PRLHLHCKQLTLPDVSFAL 432 >ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum tuberosum] Length = 467 Score = 271 bits (694), Expect = 2e-70 Identities = 138/280 (49%), Positives = 187/280 (66%), Gaps = 9/280 (3%) Frame = +2 Query: 212 SEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYG 391 SEK K++ SL +YKDP+++V+NKP G+PVQGG GI++S+D LA + + Sbjct: 157 SEKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHE 216 Query: 392 YKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWA 571 Y E PRLVHRLD+DCSG+LVMGRT+ SAS LH++FREKT +ED + L+++YWA Sbjct: 217 YSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWA 276 Query: 572 LVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTW 751 LVIG + G I APL K+V D+ SERI I + S Q AVT++R+IG S G TW Sbjct: 277 LVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTW 336 Query: 752 LELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR----PFDPISKHIESESNAE 919 LEL P TGRKHQ+RVHCAEALG PI+GDYKYGW AH+K + P ++ ++ Sbjct: 337 LELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKP 396 Query: 920 E-----LNNGSVLSEEPLLHLHCRQISIPNITEAMDRPDI 1024 + L NGS+ ++P LHLHC+++ +PNI+ A+ R + Sbjct: 397 DPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQV 436 >dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 357 Score = 271 bits (694), Expect = 2e-70 Identities = 139/297 (46%), Positives = 196/297 (65%), Gaps = 9/297 (3%) Frame = +2 Query: 140 EIMRPGMKLYLXXXXXXXXXXXXMSE-KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPS 316 E+M PGM+++L +L + ++Y++ LVIYKD ++VLNKP Sbjct: 16 EVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAILVLNKPP 75 Query: 317 GLPVQGGPGIQKSIDSLAVAALSYGYKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLF 496 +P++G + S+D LA AALS+G +EGP+LVHRLD+D SG+L+MGRT+E + LH LF Sbjct: 76 KVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTREGFTRLHWLF 135 Query: 497 RE-KTEKFSSEDPTMFGQKLKRRYWALVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAH 673 K K +S+ + +RYWALVIGT + +G I APLTKV+ DD +ER+++AH Sbjct: 136 TSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKAERVILAH 195 Query: 674 EKEGNSTQDAVTDFRVIGPSIYGCTWLELCPFTGRKHQVRVHCAEALGMPILGDYKYGWS 853 + Q+AVT++RV+GP+I GC+W+EL P TGRKHQ+RVHCAEALG PI+GDYKYGW Sbjct: 196 PSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWF 255 Query: 854 AHKKWR-----PFDPISKHIESESNAE--ELNNGSVLSEEPLLHLHCRQISIPNITE 1003 H++W+ F+P + E E+ GSVLS+ PLLHLHCR++ +PNI + Sbjct: 256 VHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAK 312 >gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao] Length = 477 Score = 271 bits (692), Expect = 4e-70 Identities = 134/280 (47%), Positives = 188/280 (67%), Gaps = 9/280 (3%) Frame = +2 Query: 215 EKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGY 394 E+ Q + +I L +YKDP +IVLNKP G+PVQGG GI+ S+D LA A L + Y Sbjct: 168 EEKQESGCTEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDY 227 Query: 395 KEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWAL 574 E PRLVHRLD+D SG+LVMGRT+ SA++LH++FRE+T S +D + L++RYWAL Sbjct: 228 SEPPRLVHRLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWAL 287 Query: 575 VIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWL 754 VIG+ + +G I+APL KVV DD S+RI + + S+Q A T+++VI + +G TWL Sbjct: 288 VIGSPRRPKGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWL 347 Query: 755 ELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR--PFDPISKHIESESNAE--- 919 EL P TGRKHQ+RVHCAE LG PI+GDYKYGW AH++W+ P + K + E Sbjct: 348 ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSNDKCPEENML 407 Query: 920 ----ELNNGSVLSEEPLLHLHCRQISIPNITEAMDRPDIS 1027 +++GS+ ++ P LHLHCR++ PN+++A+ +S Sbjct: 408 PFGLNMDSGSISAKRPRLHLHCREMIFPNVSQALQNLQLS 447 >ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum lycopersicum] Length = 467 Score = 271 bits (692), Expect = 4e-70 Identities = 140/280 (50%), Positives = 187/280 (66%), Gaps = 9/280 (3%) Frame = +2 Query: 212 SEKAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYG 391 SEK K++ SL +YKD ++IV+NKP G+PVQGG GI++S+D LA +S+ Sbjct: 157 SEKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQ 216 Query: 392 YKEGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWA 571 Y E PRLVHRLD+DCSG+LVMGRT+ SAS LH++FREKT +ED + L+++YWA Sbjct: 217 YSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWA 276 Query: 572 LVIGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTW 751 LVIG + G I APL K+V D+ SERI I + S Q AVT++R+IG S G TW Sbjct: 277 LVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTW 336 Query: 752 LELCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWR----PFDPISKHIESESNAE 919 LEL P TGRKHQ+RVHCAEALG PI+GDYKYGW AH+K + P ++ +E Sbjct: 337 LELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLVVEIPRQKP 396 Query: 920 E-----LNNGSVLSEEPLLHLHCRQISIPNITEAMDRPDI 1024 + L NGS+ ++P LHLHC+++ +PNI+ A+ R + Sbjct: 397 DPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQV 436 >ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella] gi|482566291|gb|EOA30480.1| hypothetical protein CARUB_v10013603mg [Capsella rubella] Length = 476 Score = 270 bits (691), Expect = 5e-70 Identities = 138/273 (50%), Positives = 185/273 (67%), Gaps = 3/273 (1%) Frame = +2 Query: 218 KAQSLRLDTRTMKYIESLVIYKDPQLIVLNKPSGLPVQGGPGIQKSIDSLAVAALSYGYK 397 K +S R K++ SLV+YKDP +IVLNKP G+ VQGG GI+ SID LA L++ Sbjct: 166 KKESFRCSEEERKFVCSLVLYKDPSIIVLNKPHGMAVQGGTGIKTSIDELAATCLTFDKS 225 Query: 398 EGPRLVHRLDKDCSGVLVMGRTKESASLLHTLFREKTEKFSSEDPTMFGQKLKRRYWALV 577 E PRLVHRLD+DCSG+LV+ RT+ +A++LH++FREKT S+ + LKR+Y ALV Sbjct: 226 ESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTSGASAYGVKKNIKSLKRKYMALV 285 Query: 578 IGTLNQKQGRIIAPLTKVVSDDKSSERILIAHEKEGNSTQDAVTDFRVIGPSIYGCTWLE 757 IG +++G+I APL KVV DD S+RI + E STQ A+T++RVI S +G TWLE Sbjct: 286 IGCPRRQRGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITEYRVIESSPHGYTWLE 345 Query: 758 LCPFTGRKHQVRVHCAEALGMPILGDYKYGWSAHKKWRPF---DPISKHIESESNAEELN 928 L P TGRKHQ+RVHCAE LG PI+GDYKYGW AHK P + +S +L+ Sbjct: 346 LRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKSREPLVTSENTPTKPQSSPFGLDLD 405 Query: 929 NGSVLSEEPLLHLHCRQISIPNITEAMDRPDIS 1027 G V S++P LHLH +QI +PNI++ +++ +S Sbjct: 406 GGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVS 438