BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00022109
         (430 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           152   4e-35
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...   150   2e-34
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   149   3e-34
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   149   4e-34
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   149   4e-34
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   149   4e-34
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   149   4e-34
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   149   5e-34
gb|AAY87200.1| reverse transcriptase [Sciadopitys verticillata]       148   6e-34
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   148   6e-34
gb|AAB82754.1| retrofit [Oryza longistaminata]                        148   8e-34
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc...   147   1e-33
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   147   1e-33
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   147   1e-33
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   147   2e-33
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   146   2e-33
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   146   2e-33
ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa In...   146   2e-33
gb|ABA99232.1| retrotransposon protein, putative, Ty1-copia subc...   146   2e-33
emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]           146   2e-33

>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  152 bits (384), Expect = 4e-35
 Identities = 73/144 (50%), Positives = 103/144 (71%), Gaps = 2/144 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGFHQ+EG+DY ETF+P+     IR++L +A  KGW++  LDV ++FLHG L+  
Sbjct: 948  ARLVAKGFHQEEGLDYLETFSPVVRTATIRLVLDVATAKGWNIKQLDVSNAFLHGELKEP 1007

Query: 248  VHMTQSPGY--NEKIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PG+   EK   VC+L K+LYGLKQAPR W+  ++++L D GF  SK DP+L+  
Sbjct: 1008 VYMLQPPGFVDQEKPSYVCRLTKALYGLKQAPRAWFDTISNYLLDFGFSCSKSDPSLFTY 1067

Query: 74   NKGDKGRPIILAFHVDDIIITGED 3
            +K   G+ ++L  +VDDI++TG D
Sbjct: 1068 HK--NGKTLVLLLYVDDILLTGSD 1089


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score =  150 bits (379), Expect = 2e-34
 Identities = 73/138 (52%), Positives = 101/138 (73%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR +L +A+++GW +  LDV+++FLHG LE +
Sbjct: 848  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEED 907

Query: 248  VHMTQSPGYNEKIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYLNK 69
            V M Q PGY +K   VCKL K+LYGLKQAPR WY RL++ L + GFK+SK D +L++ +K
Sbjct: 908  VFMRQPPGYEQKDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSK 967

Query: 68   GDKGRPIILAFHVDDIII 15
            GD    I +  +VDDII+
Sbjct: 968  GDV--TIFMLVYVDDIIV 983


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|31433472|gb|AAP54977.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1031

 Score =  149 bits (377), Expect = 3e-34
 Identities = 73/138 (52%), Positives = 100/138 (72%)
 Frame = -3

Query: 428 ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
           ARLVAKGF Q+ GIDY++TF P+     IR +L +A+++GW +  LDV+++FLHG LE +
Sbjct: 586 ARLVAKGFKQRYGIDYEDTFRPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEED 645

Query: 248 VHMTQSPGYNEKIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYLNK 69
           V M Q PGY +K   VCKL K+LYGLKQAPR WY RL++ L + GFK+SK D +L++ +K
Sbjct: 646 VFMRQPPGYEQKDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSK 705

Query: 68  GDKGRPIILAFHVDDIII 15
           GD    I +  +VDDII+
Sbjct: 706 GDV--TIFMLVYVDDIIV 721


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  149 bits (376), Expect = 4e-34
 Identities = 77/140 (55%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L LAV+KGW +  LDV+++FLHG LE E
Sbjct: 1007 ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEE 1066

Query: 248  VHMTQSPGYNE--KIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PG+ +  K   VCKL K+LYGLKQAPR W+ RL+  L D GFK SK D +L++L
Sbjct: 1067 VYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFL 1126

Query: 74   NKGDKGRPIILAFHVDDIII 15
            NKGD    + +  +VDDII+
Sbjct: 1127 NKGD--ITMFVLVYVDDIIV 1144


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  149 bits (376), Expect = 4e-34
 Identities = 77/140 (55%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L LAV+KGW +  LDV+++FLHG LE E
Sbjct: 729  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEE 788

Query: 248  VHMTQSPGYNE--KIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PG+ +  K   VCKL K+LYGLKQAPR W+ RL+  L D GFK SK D +L++L
Sbjct: 789  VYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFL 848

Query: 74   NKGDKGRPIILAFHVDDIII 15
            NKGD    + +  +VDDII+
Sbjct: 849  NKGD--ITMFVLVYVDDIIV 866


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  149 bits (376), Expect = 4e-34
 Identities = 77/140 (55%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L LAV+KGW +  LDV+++FLHG LE E
Sbjct: 1000 ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGYLEEE 1059

Query: 248  VHMTQSPGYNE--KIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PG+ +  K   VCKL K+LYGLKQAPR W+ RL+  L D GFK SK D +L++L
Sbjct: 1060 VYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKADTSLFFL 1119

Query: 74   NKGDKGRPIILAFHVDDIII 15
            NKGD    + +  +VDDII+
Sbjct: 1120 NKGD--ITMFVLVYVDDIIV 1137


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  149 bits (376), Expect = 4e-34
 Identities = 75/140 (53%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L +AV++GW +  LDV+++FLHG LE E
Sbjct: 810  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEE 869

Query: 248  VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY +K+  D VCKL K+LYGLKQAPR WY +L+  L+  GF+ SK D +L++ 
Sbjct: 870  VYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFY 929

Query: 74   NKGDKGRPIILAFHVDDIII 15
            NKG  G  I +  +VDDII+
Sbjct: 930  NKG--GLIIFVLVYVDDIIV 947


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  149 bits (375), Expect = 5e-34
 Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 2/141 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L +AV+KGW +  LDV+++FLHG LE E
Sbjct: 801  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEE 860

Query: 248  VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY +      VCKL K+LYGLKQAPR WY RL+  L D GF+ SK D +L++ 
Sbjct: 861  VYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFY 920

Query: 74   NKGDKGRPIILAFHVDDIIIT 12
            NKGD    I +  +VDDII+T
Sbjct: 921  NKGD--LIIFVLIYVDDIIVT 939


>gb|AAY87200.1| reverse transcriptase [Sciadopitys verticillata]
          Length = 148

 Score =  148 bits (374), Expect = 6e-34
 Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428 ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
           ARLVAKG+ Q+EG+D++ETFAP A +   R+LL +A   GW VF +DVKS+FL+G+L+ E
Sbjct: 7   ARLVAKGYLQQEGVDFEETFAPTAKMVTFRLLLSMAAQFGWKVFQMDVKSAFLNGDLDEE 66

Query: 248 VHMTQSPGYNE--KIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
           V+MTQ  G+ E     LVC+L+KSLYGLKQAPR WY ++ + LKD GF+ S  DPNL+  
Sbjct: 67  VYMTQPEGFQETGSEHLVCRLVKSLYGLKQAPRAWYIKIDAHLKDSGFRRSMSDPNLYV- 125

Query: 74  NKGDKGRPIILAFHVDDIII 15
            K  +   +IL  +VDD++I
Sbjct: 126 -KSTEDSIVILVVYVDDVVI 144


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  148 bits (374), Expect = 6e-34
 Identities = 77/140 (55%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L +AV++GW +  LDV+++FLHG LE E
Sbjct: 985  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFLHGVLEEE 1044

Query: 248  VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY      D VCKL K+LYGLKQAPR WY RL+  L D GFK SK D +L++ 
Sbjct: 1045 VYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFY 1104

Query: 74   NKGDKGRPIILAFHVDDIII 15
            NKG     I L  +VDDII+
Sbjct: 1105 NKG--SLTIFLLIYVDDIIV 1122


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  148 bits (373), Expect = 8e-34
 Identities = 75/140 (53%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L +AV++GW +  LDV+++FLHG LE E
Sbjct: 999  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEE 1058

Query: 248  VHMTQSPGY--NEKIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PG+  + K D VCKL K+LYGLKQAPR WY RL+  L + GF+ SK D +L++L
Sbjct: 1059 VYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFL 1118

Query: 74   NKGDKGRPIILAFHVDDIII 15
            NKG  G  + +  +VDDII+
Sbjct: 1119 NKG--GILMFVLVYVDDIIV 1136


>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1241

 Score =  147 bits (371), Expect = 1e-33
 Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L LAV++GW +  LDVK++FLHG LE E
Sbjct: 893  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEE 952

Query: 248  VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY +K   + VCKL K+LYGLKQAPR WY RL++ L + GF  SK D +L++ 
Sbjct: 953  VYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFY 1012

Query: 74   NKGDKGRPIILAFHVDDIII 15
             KG     I L  +VDDII+
Sbjct: 1013 KKGQVS--IFLLIYVDDIIV 1030


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  147 bits (371), Expect = 1e-33
 Identities = 71/138 (51%), Positives = 100/138 (72%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            AR+VAKGF Q+ GIDY++TF P+     IR +L +A+++GW +  LDV+++FLHG LE +
Sbjct: 986  ARVVAKGFKQRYGIDYEDTFNPVVKAATIRTILSIAISRGWTLRQLDVQNAFLHGVLEED 1045

Query: 248  VHMTQSPGYNEKIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYLNK 69
            V M Q PGY +K   VCKL K+LYGLKQAPR WY RL++ L + GFK+SK D +L++ +K
Sbjct: 1046 VFMRQPPGYEQKDGYVCKLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSK 1105

Query: 68   GDKGRPIILAFHVDDIII 15
            GD    + +  +VDDII+
Sbjct: 1106 GDVA--MFMLVYVDDIIV 1121


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  147 bits (371), Expect = 1e-33
 Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L LAV++GW +  LDVK++FLHG LE E
Sbjct: 947  ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEE 1006

Query: 248  VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY +K   + VCKL K+LYGLKQAPR WY RL++ L + GF  SK D +L++ 
Sbjct: 1007 VYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFY 1066

Query: 74   NKGDKGRPIILAFHVDDIII 15
             KG     I L  +VDDII+
Sbjct: 1067 KKGQVS--IFLLIYVDDIIV 1084


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  147 bits (370), Expect = 2e-33
 Identities = 76/141 (53%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+     IR++L +AV++GW +  LDV+++FLHG LE E
Sbjct: 1001 ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEE 1060

Query: 248  VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY ++     VCKL K+LYGLKQAPR WY RL+  L D GF+ SK D +L++ 
Sbjct: 1061 VYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFY 1120

Query: 74   NKGDKGRPIILAFHVDDIIIT 12
            NKG  G  I +  +VDDII+T
Sbjct: 1121 NKG--GLIIFVLIYVDDIIVT 1139


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  146 bits (369), Expect = 2e-33
 Identities = 73/139 (52%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
 Frame = -3

Query: 425  RLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*EV 246
            RL+AKGF Q+ GIDY++TF+P+     IR++L +AV++GW +  LDV++ FLHG LE EV
Sbjct: 1003 RLIAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEV 1062

Query: 245  HMTQSPGY--NEKIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYLN 72
            +M Q PG+  + K D VCKL K+LYGLKQAPR WY RL+  L + GF+ SK D +L++LN
Sbjct: 1063 YMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLN 1122

Query: 71   KGDKGRPIILAFHVDDIII 15
            KG  G  + +  +VDDII+
Sbjct: 1123 KG--GIIMFVLVYVDDIIV 1139


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
           gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
           Japonica Group]
          Length = 821

 Score =  146 bits (369), Expect = 2e-33
 Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428 ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
           ARLVAKGF Q+ GIDY++TF+P+     IR++L LAV++GW +  LDVK++FLHG LE E
Sbjct: 369 ARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEE 428

Query: 248 VHMTQSPGYNEKI--DLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
           V+M Q PGY +K   + VCKL K+LYGLKQAPR WY RL++ L + GF  SK D +L++ 
Sbjct: 429 VYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFY 488

Query: 74  NKGDKGRPIILAFHVDDIII 15
            KG     I L  +VDDII+
Sbjct: 489 KKGQVS--IFLLIYVDDIIM 506


>ref|YP_514636.1| hypothetical protein OrsaiPp07 [Oryza sativa Indica Group]
           gi|289065044|ref|YP_003433855.1| hypothetical protein
           OrrupM_p18 [Oryza rufipogon] gi|74100111|gb|AAZ99275.1|
           hypothetical protein (mitochondrion) [Oryza sativa
           Indica Group] gi|74100166|gb|AAZ99329.1| hypothetical
           protein (mitochondrion) [Oryza sativa Japonica Group]
           gi|74100220|gb|AAZ99382.1| hypothetical protein
           (mitochondrion) [Oryza sativa Japonica Group]
           gi|285026126|dbj|BAI67959.1| hypothetical protein [Oryza
           rufipogon] gi|285026155|dbj|BAI67987.1| hypothetical
           protein [Oryza sativa Indica Group]
           gi|353685219|gb|AER12982.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|353685288|gb|AER13050.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277649|gb|AEZ03755.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|374277659|gb|AEZ03764.1| hypothetical protein
           (mitochondrion) [Oryza sativa Indica Group]
           gi|528540457|dbj|BAN67511.1| hypothetical protein
           (mitochondrion) [Oryza rufipogon]
           gi|528540460|dbj|BAN67513.1| hypothetical protein
           (mitochondrion) [Oryza rufipogon]
          Length = 490

 Score =  146 bits (369), Expect = 2e-33
 Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428 ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
           ARLVAKGF Q+ GIDY+ETF+P+     IR++L LAV+ GW +  LDV+++FLHG LE +
Sbjct: 47  ARLVAKGFKQRYGIDYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEED 106

Query: 248 VHMTQSPGYNE--KIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
           V+M Q PGY +  K+D VCKL K+LYGLKQAPR W+ RL+  L++ GF+ SK D +L++ 
Sbjct: 107 VYMRQPPGYEDKSKLDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFY 166

Query: 74  NKGDKGRPIILAFHVDDIII 15
            KG     I +  +VDDII+
Sbjct: 167 KKGTIS--IFVLIYVDDIIV 184


>gb|ABA99232.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 308

 Score =  146 bits (369), Expect = 2e-33
 Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428 ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
           ARLVAKGF Q+ GIDY+ETF+P+     IR++L LAV+ GW +  LDV+++FLHG LE +
Sbjct: 47  ARLVAKGFKQRYGIDYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEED 106

Query: 248 VHMTQSPGYNE--KIDLVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
           V+M Q PGY +  K+D VCKL K+LYGLKQAPR W+ RL+  L++ GF+ SK D +L++ 
Sbjct: 107 VYMRQPPGYEDKSKLDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFY 166

Query: 74  NKGDKGRPIILAFHVDDIII 15
            KG     I +  +VDDII+
Sbjct: 167 KKGTIS--IFVLIYVDDIIV 184


>emb|CAH67225.1| OSIGBa0145M07.7 [Oryza sativa Indica Group]
          Length = 1087

 Score =  146 bits (369), Expect = 2e-33
 Identities = 78/140 (55%), Positives = 97/140 (69%), Gaps = 2/140 (1%)
 Frame = -3

Query: 428  ARLVAKGFHQKEGIDYKETFAPMANIRIIRMLLKLAVNKGWDVFHLDVKSSFLHGNLE*E 249
            ARLVAKGF Q+ GIDY++TF+P+  I  IR++L LAV+KGW +  LDVK++FLHG LE E
Sbjct: 700  ARLVAKGFKQRYGIDYEDTFSPVVKISTIRLVLSLAVSKGWSIRQLDVKNAFLHGILEEE 759

Query: 248  VHMTQSPGYNEKID--LVCKLMKSLYGLKQAPRTWYKRLTSFLKDKGFKTSKQDPNLWYL 75
            V+M Q PGY +K     VCKL K+LYGLKQAPR WY RL   L   GF  SK D +L++ 
Sbjct: 760  VYMKQPPGYVDKSSSYYVCKLDKALYGLKQAPRAWYYRLYDKLCQLGFSASKADTSLFFY 819

Query: 74   NKGDKGRPIILAFHVDDIII 15
             KGD    I    +VDDII+
Sbjct: 820  RKGDV--VIYFLVYVDDIIV 837