BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00021990
         (1343 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containi...   152   3e-34
ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containi...   152   3e-34
ref|XP_006465352.1| PREDICTED: pentatricopeptide repeat-containi...   151   7e-34
ref|XP_002530894.1| pentatricopeptide repeat-containing protein,...   150   1e-33
ref|XP_006427239.1| hypothetical protein CICLE_v100269871mg, par...   149   2e-33
ref|XP_002305285.2| pentatricopeptide repeat-containing family p...   146   2e-32
ref|XP_004305328.1| PREDICTED: pentatricopeptide repeat-containi...   144   6e-32
gb|ESW16694.1| hypothetical protein PHAVU_007G177800g [Phaseolus...   143   2e-31
gb|EMJ17106.1| hypothetical protein PRUPE_ppa004160mg [Prunus pe...   143   2e-31
ref|XP_006364201.1| PREDICTED: pentatricopeptide repeat-containi...   140   9e-31
ref|XP_006842064.1| hypothetical protein AMTR_s00078p00045650 [A...   140   1e-30
gb|EOY26490.1| Pentatricopeptide repeat (PPR) superfamily protei...   140   1e-30
ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-30
emb|CBI36294.3| unnamed protein product [Vitis vinifera]              139   2e-30
ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containi...   138   5e-30
ref|XP_004235996.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-29
gb|EXB67320.1| hypothetical protein L484_025802 [Morus notabilis]     136   2e-29
ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containi...   133   1e-28
ref|NP_175673.1| pentatricopeptide repeat-containing protein [Ar...   132   3e-28
gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japo...   132   4e-28

>ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  152 bits (384), Expect = 3e-34
 Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 1/234 (0%)
 Frame = +3

Query: 12  DEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAI 191
           DE YK++ EM ++G  PD  TY+  I + C+   L    R L R+ R    P+V  YN +
Sbjct: 272 DEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCV 331

Query: 192 IEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDE 371
           I++LC  Q+ +EEA QI+D M+ + V PD  +Y+ +   HC   ++  A  L  +M  D+
Sbjct: 332 IKKLCKDQN-VEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDK 390

Query: 372 IPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGW-THEA 548
                  YNM+++  +R  +F+RA   WE +  +G   +VS Y  MIH   K  W   EA
Sbjct: 391 CVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEA 450

Query: 549 VHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
             +F  MI + IPPY+ T + +   L+ +  ++ + I  D+MKRS S  IQ+L+
Sbjct: 451 CKYFEMMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELA 504


>ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score =  152 bits (384), Expect = 3e-34
 Identities = 82/234 (35%), Positives = 128/234 (54%), Gaps = 1/234 (0%)
 Frame = +3

Query: 12  DEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAI 191
           DE YK++ EM ++G  PD  TY+  I + C+   L    R L R+ R    P+V  YN +
Sbjct: 272 DEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCV 331

Query: 192 IEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDE 371
           I++LC  Q+ +EEA QI+D M+ + V PD  +Y+ +   HC   ++  A  L  +M  D+
Sbjct: 332 IKKLCKDQN-VEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDK 390

Query: 372 IPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGW-THEA 548
                  YNM+++  +R  +F+RA   WE +  +G   +VS Y  MIH   K  W   EA
Sbjct: 391 CVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLEEA 450

Query: 549 VHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
             +F  MI + IPPY+ T + +   L+ +  ++ + I  D+MKRS S  IQ+L+
Sbjct: 451 CKYFEMMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELA 504


>ref|XP_006465352.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Citrus sinensis]
          Length = 531

 Score =  151 bits (381), Expect = 7e-34
 Identities = 79/235 (33%), Positives = 131/235 (55%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE + +  EM + G +PD  +Y+  I A CEA  +    R L    RY   P+V  YN 
Sbjct: 276 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 335

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC ++  +EEA Q++D M+ +   PD  +Y+ ++  HC   ++ +A +L  +M ++
Sbjct: 336 IIKKLCKNEK-VEEAYQLLDEMIERGANPDEWSYNAILAYHCDHAEVNMALRLITRMTKE 394

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
            +      YNM+++  +R  +F+RA   WE +E +G   +VS Y  M+H L  K G   E
Sbjct: 395 NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE 454

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  M+ + IPPY  T + + + LV L   + + I  D+M+RS S  IQ+L+
Sbjct: 455 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDVIEILADKMERSTSCTIQELA 509



 Score = 64.3 bits (155), Expect = 1e-07
 Identities = 46/184 (25%), Positives = 80/184 (43%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           AIR   R   +G  PS+   + ++  LC  +  ++ A Q  D++   ++ P  +TYS L+
Sbjct: 175 AIRAFNRMVEFGIKPSIYDLDQLLHALCKRKH-VKVAHQFFDNV-KHEITPTVKTYSILV 232

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
                 G+L  A KLFD+MLE + P     +N L+ A  +    + A     ++ + G  
Sbjct: 233 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE 292

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +  +Y   IH   +    H      + M +  + P V+T   ++  L K +     Y  
Sbjct: 293 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIKKLCKNEKVEEAYQL 352

Query: 663 HDRM 674
            D M
Sbjct: 353 LDEM 356



 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 2/209 (0%)
 Frame = +3

Query: 3   DLLDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAY 182
           +L ++  + ++ M+  G KP       L+ ALC+ K +KVA      + ++  TP+V  Y
Sbjct: 170 NLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVA-HQFFDNVKHEITPTVKTY 228

Query: 183 NAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKML 362
           + ++  L      L EAR++ D ML +    D   ++ L+ + C+ G +  A  +  +M 
Sbjct: 229 SILVRGL-GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR 287

Query: 363 EDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTH 542
                     Y++ I A              + ++   LV NV  Y  +I +L K     
Sbjct: 288 SIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIKKLCKNEKVE 347

Query: 543 EAVHFFNEMIKKAIPP--YVYTCKFMMHC 623
           EA    +EMI++   P  + Y      HC
Sbjct: 348 EAYQLLDEMIERGANPDEWSYNAILAYHC 376


>ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529547|gb|EEF31500.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 519

 Score =  150 bits (379), Expect = 1e-33
 Identities = 81/236 (34%), Positives = 137/236 (58%), Gaps = 2/236 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           + E YK++ EM ++G KPD  T++  I A CEA  + +A R L    RY   P+V  YN 
Sbjct: 264 VSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNC 323

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           +I++LC  ++ +EEA Q+++ ++ +   PD  +Y+ ++  HC+  ++  A++L  +M++D
Sbjct: 324 MIKKLC-KKEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRMVKD 382

Query: 369 E-IPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTH 542
             +P  H  YNML++  IR  +F+RA+  WE +  KG   +VS Y  M+H L  K G   
Sbjct: 383 NCLPDKHS-YNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVSTYSVMVHGLCKKKGKLE 441

Query: 543 EAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           EA  +F  MI + IPPY  T + + + L+ L   + + I   +M+ S +  IQ+L+
Sbjct: 442 EACKYFEMMIDEGIPPYSSTVEILRNRLIGLGLLDYIEILAGKMEHSTACSIQELA 497


>ref|XP_006427239.1| hypothetical protein CICLE_v100269871mg, partial [Citrus
           clementina] gi|557529229|gb|ESR40479.1| hypothetical
           protein CICLE_v100269871mg, partial [Citrus clementina]
          Length = 436

 Score =  149 bits (377), Expect = 2e-33
 Identities = 79/235 (33%), Positives = 130/235 (55%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE + +  EM + G +PD  +Y+  I A CEA  +    R L    RY   P+V  YN 
Sbjct: 181 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 240

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II +LC ++  +EEA Q++D M+ +   PD  +Y+ ++  HC   ++ +A +L  +M ++
Sbjct: 241 IIRKLCKNEK-VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE 299

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
            +      YNM+++  +R  +F+RA   WE +E +G   +VS Y  M+H L  K G   E
Sbjct: 300 NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE 359

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  M+ + IPPY  T + + + LV L   + + I  D+M+RS S  IQ+L+
Sbjct: 360 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA 414



 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 2/209 (0%)
 Frame = +3

Query: 3   DLLDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAY 182
           +L ++  + ++ M+  G KP       L+ ALC+ K +KVA      + ++ FTP+V  Y
Sbjct: 75  NLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVA-HQFFDNAKHEFTPTVKTY 133

Query: 183 NAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKML 362
           + ++  L      L EAR++ D ML +    D   ++ L+ + C+ G +  A  +  +M 
Sbjct: 134 SILVRGL-GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR 192

Query: 363 EDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTH 542
                     Y++ I A              + ++   LV NV  Y  +I +L K     
Sbjct: 193 SIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE 252

Query: 543 EAVHFFNEMIKKAIPP--YVYTCKFMMHC 623
           EA    +EMI++   P  + Y      HC
Sbjct: 253 EAYQLLDEMIERGANPDEWSYNAILAYHC 281



 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 46/184 (25%), Positives = 78/184 (42%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           AIR   R   +G  PS+   + ++  LC  +  ++ A Q  D+    +  P  +TYS L+
Sbjct: 80  AIRAFNRMVEFGIKPSIYDLDQLLHALCKRKH-VKVAHQFFDNA-KHEFTPTVKTYSILV 137

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
                 G+L  A KLFD+MLE + P     +N L+ A  +    + A     ++ + G  
Sbjct: 138 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE 197

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +  +Y   IH   +    H      + M +  + P V+T   ++  L K +     Y  
Sbjct: 198 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL 257

Query: 663 HDRM 674
            D M
Sbjct: 258 LDEM 261


>ref|XP_002305285.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550340729|gb|EEE85796.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 523

 Score =  146 bits (368), Expect = 2e-32
 Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 1/236 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE YK++ E+ + G +PD  +Y   I A CEA  +      L R  RY   P+V  YN 
Sbjct: 268 VDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNC 327

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC +   +E+A Q++  M+ + V PD  +Y+ ++  HC+  ++  A+KL   M++D
Sbjct: 328 IIKKLCKN-GKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKD 386

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNML++  +R  +F+RA   WE +  +G   +VS Y  MIH L  K G   E
Sbjct: 387 NCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEE 446

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSR 713
           A  +F  MI + IPPY  T + + + L+     + + I   +M+R  S  IQ+L++
Sbjct: 447 ACRYFETMIDEGIPPYASTIEMLRNRLIGFGLLDHIEILACKMERGTSCSIQELAK 502



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 2/209 (0%)
 Frame = +3

Query: 3   DLLDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAY 182
           +L  +  + +  M   G +P       L+  LC+ K +K A +   R  ++ F      Y
Sbjct: 162 NLPSDAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDRV-KHKFEAKAKTY 220

Query: 183 NAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKML 362
           + ++       + +E AR++ D ML +    D   Y+ L+ + C+ G +  A K+F ++ 
Sbjct: 221 SILVRGWGDIGEAVE-ARKVFDEMLGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIG 279

Query: 363 EDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTH 542
              +      Y + IRA              + ++   LV NV  Y  +I +L K G   
Sbjct: 280 SHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVE 339

Query: 543 EAVHFFNEMIKKAIPP--YVYTCKFMMHC 623
           +A    +EM+++ + P  + Y      HC
Sbjct: 340 DAYQLLHEMMERGVSPDAWSYNTILAYHC 368


>ref|XP_004305328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
            mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 734

 Score =  144 bits (364), Expect = 6e-32
 Identities = 87/259 (33%), Positives = 136/259 (52%), Gaps = 10/259 (3%)
 Frame = +3

Query: 9    LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
            +DE YK++ EM + G +PD  TY+  I A CEA  +      L R  RY    +V  YN 
Sbjct: 408  VDEAYKIFREMGSKGVEPDAGTYSIFIRAYCEANDIHSVFSVLDRMKRYNLLANVFTYNC 467

Query: 189  IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
            +I++LC ++  +EEA Q++D M+   V PD  +Y+ +   HC+ G++  A +L  +M +D
Sbjct: 468  VIKKLCKNE-RVEEAYQLLDEMIEMGVKPDEWSYNAIQAYHCEHGEVNQALRLLSRMEKD 526

Query: 369  EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGW-THE 545
                 H  YNM+++  IR  +F+RA   WE +  +G   +VS Y  MIH L K      E
Sbjct: 527  SCMPDHHTYNMVLKLLIRIGRFDRATDVWERMGKRGFYPSVSTYSVMIHGLCKKKHKLEE 586

Query: 546  AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSRYF-V 722
            A  +F  MI + IPPY  T + + + L+ L   + + I   +M++S S   Q+ ++   V
Sbjct: 587  ACKYFEIMIDEGIPPYSSTVEMLRNRLLGLGLLDDIEILARKMEQSSSCSTQEFAKKVGV 646

Query: 723  PARDRR--------FRPPP 755
              R RR        + PPP
Sbjct: 647  QCRPRRAPRVIEVNWHPPP 665



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 5/205 (2%)
 Frame = +3

Query: 24  KLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAIIE-- 197
           + Y  M+  G KP       L+  LC+ K +K A +      + GF      Y+ ++   
Sbjct: 309 RAYSRMVEFGIKPSIHDLDHLLYTLCKRKHVKHA-QEFFDKVKSGFELGAKTYSILMRGW 367

Query: 198 -QLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDEI 374
             +C S    + AR++ D M  K  L D   Y+  + + C+ G +  A K+F +M    +
Sbjct: 368 GDICDS----DNARKLFDEMTEKGCLVDVPAYNSYLEALCKGGNVDEAYKIFREMGSKGV 423

Query: 375 PTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTHEAVH 554
                 Y++ IRA              + ++   L+ NV  Y  +I +L K     EA  
Sbjct: 424 EPDAGTYSIFIRAYCEANDIHSVFSVLDRMKRYNLLANVFTYNCVIKKLCKNERVEEAYQ 483

Query: 555 FFNEMIKKAIPP--YVYTCKFMMHC 623
             +EMI+  + P  + Y      HC
Sbjct: 484 LLDEMIEMGVKPDEWSYNAIQAYHC 508


>gb|ESW16694.1| hypothetical protein PHAVU_007G177800g [Phaseolus vulgaris]
          Length = 524

 Score =  143 bits (360), Expect = 2e-31
 Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 1/245 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE  K +H+M+  G +PD  TY+  I   C A  ++ A R L +  RY   P+V  YN 
Sbjct: 267 VDEAKKFFHDMLLKGVEPDAFTYSIFIHFYCNANNVQSAFRVLDKMKRYNLLPNVFTYNC 326

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC ++  +EEA Q++D M+S  V PD  +Y+ +   HC   ++  A +L  +M +D
Sbjct: 327 IIKRLCKNE-LVEEAYQLLDEMISIGVKPDIWSYNAIQAYHCDHCEVNRALRLMFRMEKD 385

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNM+++  IR  +F++    WE++  K    +VS Y  +IH    K G   E
Sbjct: 386 NCLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVNKSFFPSVSTYSVLIHGFCKKKGKLEE 445

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSRYFVP 725
           A  +F  MI + IPPYV T + + + L+ L   + + I  D+M++S S  IQ+L+   + 
Sbjct: 446 ACKYFEMMIDEGIPPYVTTVELLRNRLLGLGLLDHIEILIDKMRQSSSHAIQELANIMIG 505

Query: 726 ARDRR 740
            R  R
Sbjct: 506 NRAAR 510



 Score = 63.9 bits (154), Expect = 1e-07
 Identities = 37/126 (29%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
 Frame = +3

Query: 3   DLLDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAY 182
           +L++E Y+L  EM++ G KPD  +Y A+    C+  ++  A+R + R ++    P    Y
Sbjct: 335 ELVEEAYQLLDEMISIGVKPDIWSYNAIQAYHCDHCEVNRALRLMFRMEKDNCLPDRHTY 394

Query: 183 NAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHC-QFGQLRIASKLFDKM 359
           N ++ +L       ++  ++ ++M++K   P   TYS LI   C + G+L  A K F+ M
Sbjct: 395 NMVL-KLLIRIGRFDKVTEVWENMVNKSFFPSVSTYSVLIHGFCKKKGKLEEACKYFEMM 453

Query: 360 LEDEIP 377
           +++ IP
Sbjct: 454 IDEGIP 459



 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 48/184 (26%), Positives = 80/184 (43%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           AIR+  R D +G TP+V   + ++  LC  +  L++A+Q  D   ++  L   +TYS LI
Sbjct: 166 AIRSFNRMDEFGITPTVHDLDKLLYFLCKRKH-LKQAQQFFDKAKNRFSL-SAKTYSILI 223

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
               + G      +LF+ ML    P     YN L+ A  +    + A  ++ D+  KG+ 
Sbjct: 224 SGWGEIGDSDKVHELFEAMLGQGCPLDLLAYNNLLGALCKSGCVDEAKKFFHDMLLKGVE 283

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +   Y   IH          A    ++M +  + P V+T   ++  L K +     Y  
Sbjct: 284 PDAFTYSIFIHFYCNANNVQSAFRVLDKMKRYNLLPNVFTYNCIIKRLCKNELVEEAYQL 343

Query: 663 HDRM 674
            D M
Sbjct: 344 LDEM 347


>gb|EMJ17106.1| hypothetical protein PRUPE_ppa004160mg [Prunus persica]
          Length = 526

 Score =  143 bits (360), Expect = 2e-31
 Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE YK++  M ++G  PD  TY+  I A CEA  +    R L R  RY   P+V +YN 
Sbjct: 270 VDEAYKIFRGMGSNGTDPDACTYSIFIRAYCEANDIHSVFRVLDRMKRYNLLPNVYSYNC 329

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC + D +EEA +++D M+ + V+PD  +Y+ +   HC   ++  A +L  +M +D
Sbjct: 330 IIKKLCKN-DKVEEAYELLDEMIERGVMPDAWSYNAIQAHHCDHCEVNRALRLLSRMKKD 388

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGW-THE 545
                   YNM+++  IR  +F+RA   WE +  +G   +VS Y  MIH L K      E
Sbjct: 389 NCKPDRHTYNMVLKLLIRIGRFDRATEVWESMGERGFYPSVSTYSVMIHGLCKKKHKLEE 448

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  MI + IPPY  T + + + L  L       I   +M++S    IQ+++
Sbjct: 449 ACKYFEIMIDEGIPPYFSTVEMLKNRLRGLGLLEHTEILASKMEQSTCCSIQEMA 503



 Score = 58.2 bits (139), Expect = 8e-06
 Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 2/202 (0%)
 Frame = +3

Query: 24  KLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAIIEQL 203
           + ++ M+  G KP       L+  LC+ K +K A        + GF  +   Y+ ++   
Sbjct: 171 RAFNRMVEFGIKPSVLDLDQLMYTLCKRKHVKYA-HEFFDKVKSGFELNAKIYSILMRGW 229

Query: 204 CTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDEIPTS 383
               D+ +EAR++ D M  +  L D   Y+  + + C+ G++  A K+F  M  +     
Sbjct: 230 GDIGDS-DEARKLFDEMTERGCLVDVPAYNSYLEALCKGGKVDEAYKIFRGMGSNGTDPD 288

Query: 384 HKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTHEAVHFFN 563
              Y++ IRA              + ++   L+ NV +Y  +I +L K     EA    +
Sbjct: 289 ACTYSIFIRAYCEANDIHSVFRVLDRMKRYNLLPNVYSYNCIIKKLCKNDKVEEAYELLD 348

Query: 564 EMIKKAIPP--YVYTCKFMMHC 623
           EMI++ + P  + Y      HC
Sbjct: 349 EMIERGVMPDAWSYNAIQAHHC 370


>ref|XP_006364201.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Solanum tuberosum]
          Length = 550

 Score =  140 bits (354), Expect = 9e-31
 Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE +  + +M + G  PD  +Y+  I   C A  +    R L +  RY   P+V  YN 
Sbjct: 293 MDEAFNFFMKMRSIGLIPDAFSYSIFIHGYCTANDIHSVFRVLDQMRRYKLVPNVFTYNC 352

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC ++  ++EA Q++D M+S+ V PD  +Y+ ++ SHC   ++ +A +L  +M ++
Sbjct: 353 IIKKLCKTKK-VDEAYQLIDEMISEGVRPDCWSYNTILASHCDHNEVNLAHRLVSRMEQN 411

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNML++  IR  +F+R    WE +E +    +VS Y  M+H    K G   E
Sbjct: 412 NCLPDKHTYNMLLKMLIRVGRFDRVEKVWESMEDRNFYPSVSTYSVMVHGFCQKKGKLEE 471

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  MI + IPPY  TC+ + + L+         I  D+M+RS SS IQ+L+
Sbjct: 472 ACKYFEMMIDEGIPPYTETCEKLRNRLIGHGFAEQTEILADKMERSTSSLIQELA 526



 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 44/184 (23%), Positives = 81/184 (44%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           AIR   +   +G  P +   + ++  LC  +   ++A++  D +   D +P  +TYS LI
Sbjct: 192 AIRAFNKMVDFGIKPCLADLDKLLLALCKRKHA-KQAQEFFDKV-KDDFMPSVKTYSILI 249

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
                 G++  A KLFD+MLE         YN ++ +  +  K + A  ++  + + GL+
Sbjct: 250 RGWGDLGEVAEAQKLFDEMLERGCSVDLLAYNSILDSLCKAGKMDEAFNFFMKMRSIGLI 309

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +  +Y   IH        H      ++M +  + P V+T   ++  L K    +  Y  
Sbjct: 310 PDAFSYSIFIHGYCTANDIHSVFRVLDQMRRYKLVPNVFTYNCIIKKLCKTKKVDEAYQL 369

Query: 663 HDRM 674
            D M
Sbjct: 370 IDEM 373


>ref|XP_006842064.1| hypothetical protein AMTR_s00078p00045650 [Amborella trichopoda]
            gi|548844113|gb|ERN03739.1| hypothetical protein
            AMTR_s00078p00045650 [Amborella trichopoda]
          Length = 595

 Score =  140 bits (353), Expect = 1e-30
 Identities = 76/237 (32%), Positives = 128/237 (54%)
 Frame = +3

Query: 9    LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
            +D  +KL+ EM + G  PD  +Y+  + A  EA  +  AIR      R+   P+V  YN+
Sbjct: 320  VDYAHKLFREMGSYGLVPDAFSYSTFVNAYSEADDVNSAIRVFDSMRRHNLVPNVYTYNS 379

Query: 189  IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
            +I+ LC ++  +++A  ++D M+ K + PD  +Y+ ++  HC   ++  A +L ++M  D
Sbjct: 380  LIKVLCKNE-RVDDAYGLLDEMIEKGLSPDLWSYNTILAIHCNVREVNKALRLLNRMDRD 438

Query: 369  EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTHEA 548
                    YNML++  I   +F+RA+  W  +E +G    V+ Y  MIH L K G   +A
Sbjct: 439  LCKPDKHTYNMLLKMLILVGRFDRAVKVWNGMEERGFYPAVTTYAVMIHGLCKRGRIEDA 498

Query: 549  VHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSRYF 719
               F  MI + +PPY  TC+ + + LV L  Q+   +  ++M+R+ S  IQ+LS  F
Sbjct: 499  CSHFETMIDEGVPPYTSTCELIRNHLVHLGMQDKARVIANKMQRASSCSIQELSIMF 555



 Score = 59.7 bits (143), Expect = 3e-06
 Identities = 49/228 (21%), Positives = 102/228 (44%), Gaps = 1/228 (0%)
 Frame = +3

Query: 18  MYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAIIE 197
           ++ L   M  DG +     +  +  +   A     AIR   R + +G  PS+   + +I 
Sbjct: 184 IWDLVFGMKNDGFEIKRELFWVMFRSYARANLPTDAIRAFRRMEEFGIKPSIDDLDQLIY 243

Query: 198 QLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDEIP 377
            LC  +  ++ A +  +    +  +   ++YS LI    + G    A  LF +M+++++P
Sbjct: 244 TLCKHR-LVDYAHKFFEKAKFEFAVSS-KSYSILINGWGEIGNWVEAESLFHEMVKEKVP 301

Query: 378 TSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTHEAVHF 557
                YN L+ +  +  K + A   + ++ + GLV +  +Y   ++   +    + A+  
Sbjct: 302 LDIVAYNTLLGSLCKSGKVDYAHKLFREMGSYGLVPDAFSYSTFVNAYSEADDVNSAIRV 361

Query: 558 FNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRM-KRSMSSDI 698
           F+ M +  + P VYT   ++  L K +  +  Y   D M ++ +S D+
Sbjct: 362 FDSMRRHNLVPNVYTYNSLIKVLCKNERVDDAYGLLDEMIEKGLSPDL 409


>gb|EOY26490.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
           cacao]
          Length = 520

 Score =  140 bits (353), Expect = 1e-30
 Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE YK++  M +   + D  +Y+  I A CEA  +  A R L R  RY   P++  YN 
Sbjct: 265 VDEAYKMFGAMGSSRIELDACSYSVFIRAYCEANDIHAAFRVLDRMRRYNLVPNLFTYNC 324

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II +LC + D ++EA Q++  M+ + + PD  +Y+ ++  HC+  ++  A  L  +M ++
Sbjct: 325 IIRKLCNN-DKVDEAYQLLTEMIERGISPDEWSYNAILAYHCEHSEVNRALNLISRMEKN 383

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
           E       YNM ++  IR  +F+RA   WE +  +G   +VS Y  MIH L  K G   E
Sbjct: 384 ECFPDRHTYNMALKLLIRIGRFDRATELWESMANRGFYPSVSTYAVMIHGLCKKRGKLEE 443

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  MI + IPPY  T + + + L+ L   + + I  ++M RS S  IQ+L+
Sbjct: 444 ACRYFEIMIDEGIPPYSSTVELLRNRLLGLGFLDNIEILANKMARSSSCSIQELA 498



 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 50/209 (23%), Positives = 87/209 (41%), Gaps = 2/209 (0%)
 Frame = +3

Query: 3   DLLDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAY 182
           +L  +  + +  M+  G +P       L+  LC+ K +K A     R  ++ F PS  +Y
Sbjct: 159 NLPGDAIRAFDRMVEFGIRPSIHDVDQLLFVLCKRKHVKQAQGFFDRV-KHEFEPSAKSY 217

Query: 183 NAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKML 362
           + ++       +  + AR++ D M+ +    D   Y+ L+ + C+ G +  A K+F  M 
Sbjct: 218 SILVRGWGDIGEACQ-ARKVFDEMVQRGCSIDVLAYNCLLEALCKSGNVDEAYKMFGAMG 276

Query: 363 EDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTH 542
              I      Y++ IRA         A    + +    LV N+  Y  +I +L       
Sbjct: 277 SSRIELDACSYSVFIRAYCEANDIHAAFRVLDRMRRYNLVPNLFTYNCIIRKLCNNDKVD 336

Query: 543 EAVHFFNEMIKKAIPP--YVYTCKFMMHC 623
           EA     EMI++ I P  + Y      HC
Sbjct: 337 EAYQLLTEMIERGISPDEWSYNAILAYHC 365


>ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  139 bits (351), Expect = 2e-30
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE YKL+ EM ++G  PD  +Y+  I A CE   +  A + L R  RY   P+V  YN 
Sbjct: 270 VDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNC 329

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           I+++LC S+  ++EA Q++D M+ + V PD  +Y+ +   HC   ++  A +L  +M ++
Sbjct: 330 IVKKLCKSEK-VDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKE 388

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNM+++  +R  +F+R    W  +E +G     S Y  M+H    K G   E
Sbjct: 389 NCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEE 448

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  MI   IPPY  T + + + ++ L     + +   +M+RS S  IQ+LS
Sbjct: 449 ACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSEQIDVLAGKMERSTSCVIQELS 503



 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 1/203 (0%)
 Frame = +3

Query: 93  ALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVL 272
           A C A     AIR   +   +G    V   + ++  LC  +  +++A++  D + + +V+
Sbjct: 159 AYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKH-VKQAQEFFDKV-NVEVM 216

Query: 273 PDFRTYSHLICSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYY 452
           P+ +TYS L+      G    A KLF++M E         YN L+ A  +    + A   
Sbjct: 217 PNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKL 276

Query: 453 WEDIEAKGLVKNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVK 632
           + ++ + GL  +  +Y   I    ++   H A    + M +  + P V+T   ++  L K
Sbjct: 277 FREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCK 336

Query: 633 LDDQNAMYIFHDRM-KRSMSSDI 698
            +  +  Y   D M +R +S D+
Sbjct: 337 SEKVDEAYQLLDEMIERGVSPDL 359


>emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  139 bits (351), Expect = 2e-30
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE YKL+ EM ++G  PD  +Y+  I A CE   +  A + L R  RY   P+V  YN 
Sbjct: 243 VDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNC 302

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           I+++LC S+  ++EA Q++D M+ + V PD  +Y+ +   HC   ++  A +L  +M ++
Sbjct: 303 IVKKLCKSEK-VDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKE 361

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNM+++  +R  +F+R    W  +E +G     S Y  M+H    K G   E
Sbjct: 362 NCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKLEE 421

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  MI   IPPY  T + + + ++ L     + +   +M+RS S  IQ+LS
Sbjct: 422 ACKYFEMMIDDGIPPYSCTVELLRNRVIGLGFSEQIDVLAGKMERSTSCVIQELS 476



 Score = 58.5 bits (140), Expect = 6e-06
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 1/203 (0%)
 Frame = +3

Query: 93  ALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVL 272
           A C A     AIR   +   +G    V   + ++  LC  +  +++A++  D + + +V+
Sbjct: 132 AYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKH-VKQAQEFFDKV-NVEVM 189

Query: 273 PDFRTYSHLICSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYY 452
           P+ +TYS L+      G    A KLF++M E         YN L+ A  +    + A   
Sbjct: 190 PNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKL 249

Query: 453 WEDIEAKGLVKNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVK 632
           + ++ + GL  +  +Y   I    ++   H A    + M +  + P V+T   ++  L K
Sbjct: 250 FREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCK 309

Query: 633 LDDQNAMYIFHDRM-KRSMSSDI 698
            +  +  Y   D M +R +S D+
Sbjct: 310 SEKVDEAYQLLDEMIERGVSPDL 332


>ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  138 bits (348), Expect = 5e-30
 Identities = 80/242 (33%), Positives = 133/242 (54%), Gaps = 1/242 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE   ++H+M++   +PD  TY+  I + C+A  ++ A R L +  RY   P+V  YN 
Sbjct: 267 VDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNC 326

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II+QLC ++  +EEA Q++D M+S+ V PD  +Y+ +   HC   ++  A +L  +M +D
Sbjct: 327 IIKQLCKNEH-VEEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKD 385

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNM+++  IR  +F++    WE++  K    +VS Y  MIH    K G   E
Sbjct: 386 ICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVMIHGFCKKKGKLEE 445

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSRYFVP 725
           A  +F  MI + IPPYV T + + + L+ L   + + I   +M++S S  IQ+L+   + 
Sbjct: 446 ACKYFEMMIDEGIPPYVTTVEMLRNRLLGLGFIDHIEILAAKMRQSTSYAIQELANIMIG 505

Query: 726 AR 731
            R
Sbjct: 506 NR 507


>ref|XP_004235996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Solanum lycopersicum]
          Length = 550

 Score =  137 bits (344), Expect = 1e-29
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 1/235 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE +  + +M + G  PD  +Y+  I   C    +    R L +  RY   P+V  YN 
Sbjct: 293 MDEAFNFFMKMRSIGLIPDAFSYSIFIHGYCAGNDIHSVFRVLDQMRRYKLVPNVFTYNC 352

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC ++  ++EA Q++D M+++ V PD  +Y+ ++ SHC   ++ +A +L  +M ++
Sbjct: 353 IIKKLCKTKK-VDEAYQLIDEMINEGVRPDCWSYNTILASHCDQNEVNLAHRLVSRMEQN 411

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNML++  IR  +F+R    W+ +E +    +VS Y  M+H    K G   E
Sbjct: 412 NCLPDKHTYNMLLKMLIRVGRFDRVEKVWKSMEGRNFYPSVSTYAVMVHGFCQKKGKLEE 471

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
           A  +F  MI + IPPY  TC+ + + L+         I  D+M+RS SS IQ+L+
Sbjct: 472 ACKYFEMMIDEGIPPYTETCEKLRNRLIGHGFAEQTEILADKMERSTSSLIQELA 526



 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 44/184 (23%), Positives = 81/184 (44%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           AIR   +   +G  P +   + ++  LC  +   ++A++  D +   D +P  +TYS LI
Sbjct: 192 AIRAFNKMVDFGIKPCLADLDKLLLALCKRKHA-KQAQEFFDKV-KDDFMPSVKTYSILI 249

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
                 G++  A KLFD+MLE         YN ++ +  +  K + A  ++  + + GL+
Sbjct: 250 RGWGDLGEVAEAQKLFDEMLERGCSVDLLAYNSILDSLCKAGKMDEAFNFFMKMRSIGLI 309

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +  +Y   IH        H      ++M +  + P V+T   ++  L K    +  Y  
Sbjct: 310 PDAFSYSIFIHGYCAGNDIHSVFRVLDQMRRYKLVPNVFTYNCIIKKLCKTKKVDEAYQL 369

Query: 663 HDRM 674
            D M
Sbjct: 370 IDEM 373


>gb|EXB67320.1| hypothetical protein L484_025802 [Morus notabilis]
          Length = 529

 Score =  136 bits (342), Expect = 2e-29
 Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 1/234 (0%)
 Frame = +3

Query: 12  DEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAI 191
           DE Y+++  M   G  PD  TY+  I   CEA  +    R L R  RY   P+V  YN I
Sbjct: 276 DEAYEIFRGMKEKGVSPDACTYSVFIRTYCEANDIHSVFRVLDRMRRYDLLPNVFTYNLI 335

Query: 192 IEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDE 371
           I++LC   + ++EA Q+++ M+   V PD  +Y+ ++  HC   ++  A +L  +M +D 
Sbjct: 336 IKKLC-KNEKVDEAYQLLEEMIENGVRPDSWSYNAILAFHCDHCEVHRALRLLSRMEKDC 394

Query: 372 IPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHEA 548
            P  H  YNM+++  I   +F+R    WE++  KG   +VS Y  MIH L  K G   EA
Sbjct: 395 KPDRH-TYNMVLKLLIGIGRFDRMTEVWENMAVKGFYPSVSTYAVMIHGLCKKKGKLEEA 453

Query: 549 VHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
             +F  MI + IPPY  T + + + L+ L     + I   +M+RS S  IQ+ +
Sbjct: 454 CKYFETMIDEGIPPYSTTVEMLRNRLLGLGLLEHIDIIARKMERSTSCLIQEFA 507


>ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  133 bits (335), Expect = 1e-28
 Identities = 77/242 (31%), Positives = 132/242 (54%), Gaps = 1/242 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +DE   ++H+M++   +PD  TY+  I + C+A  ++ A+R L +  RY   P+V  YN 
Sbjct: 267 VDEAKTIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNC 326

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II++LC ++  +EEA  ++D M+S+ V PD  +Y+ +   HC   ++  A +L  +M +D
Sbjct: 327 IIKRLCKNEH-VEEAYLLLDEMISRGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKD 385

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
                   YNM+++  IR  +F++    W ++  K    +VS Y  MIH    K G   E
Sbjct: 386 NCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGDKKFYPSVSTYSVMIHGFCKKKGKLEE 445

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSRYFVP 725
           A  +F  MI + IPPYV T + + + L+ L   + + I   +M++S S  IQ+L+   + 
Sbjct: 446 ACKYFEMMIDEGIPPYVTTVEMLRNQLLGLGFLDHIEILAAKMRQSTSYAIQELANIMIG 505

Query: 726 AR 731
            R
Sbjct: 506 NR 507



 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 47/184 (25%), Positives = 84/184 (45%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           AIR+  R D +G  P++  ++ ++  LC ++  +++A+Q  D   ++ +L   +TYS LI
Sbjct: 166 AIRSFNRMDEFGIKPTINDFDKLLFILCKTKH-VKQAQQFFDQAKNRFLLTA-KTYSILI 223

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
                 G    A +LF  MLE   P     YN L++A  +    + A   + D+ +K + 
Sbjct: 224 SGWGDIGDSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVE 283

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +   Y   IH          A+   ++M +  I P V+T   ++  L K +     Y+ 
Sbjct: 284 PDAFTYSIFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLL 343

Query: 663 HDRM 674
            D M
Sbjct: 344 LDEM 347


>ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
           gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535
           DUF domains [Arabidopsis thaliana]
           gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis
           thaliana] gi|62320530|dbj|BAD95108.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332194712|gb|AEE32833.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  132 bits (332), Expect = 3e-28
 Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 1/247 (0%)
 Frame = +3

Query: 9   LDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNA 188
           +D  YK++ EM   G KPD  ++   I A C+A  +  A + L R  RY   P+V  +N 
Sbjct: 259 VDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNH 318

Query: 189 IIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLED 368
           II+ LC ++  +++A  ++D M+ K   PD  TY+ ++  HC   ++  A+KL  +M   
Sbjct: 319 IIKTLCKNEK-VDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRT 377

Query: 369 EIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWTHE 545
           +       YNM+++  IR  +F+RA   WE +  +     V+ Y  MIH L+ K G   E
Sbjct: 378 KCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEE 437

Query: 546 AVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLSRYFVP 725
           A  +F  MI + IPPY  T + + + LV     + + +   +M+RS S  +QD++   V 
Sbjct: 438 ACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSCSVQDMA---VE 494

Query: 726 ARDRRFR 746
            R +R R
Sbjct: 495 MRGKRRR 501



 Score = 59.3 bits (142), Expect = 4e-06
 Identities = 42/184 (22%), Positives = 75/184 (40%)
 Frame = +3

Query: 123 AIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLI 302
           A R   R   +G  P V   + ++  LC  +  +  A++         ++P  +TYS L+
Sbjct: 157 ACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKH-VNHAQEFFGKAKGFGIVPSAKTYSILV 215

Query: 303 CSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLV 482
               +      A K+FD+MLE         YN L+ A  +    +     ++++   GL 
Sbjct: 216 RGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLK 275

Query: 483 KNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIF 662
            +  ++   IH     G  H A    + M +  + P VYT   ++  L K +  +  Y+ 
Sbjct: 276 PDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLL 335

Query: 663 HDRM 674
            D M
Sbjct: 336 LDEM 339


>gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
          Length = 579

 Score =  132 bits (331), Expect = 4e-28
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 1/237 (0%)
 Frame = +3

Query: 3   DLLDEMYKLYHEMMADGPKPDGSTYTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAY 182
           D+     +L +   + G  P+ +TY   + A C +K ++ A+R L R   +  TP+V  Y
Sbjct: 274 DITSAQEQLSNMQKSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTY 333

Query: 183 NAIIEQLCTSQDTLEEARQIMDSMLSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKML 362
           NA+I  LC   + + EA  I+D + ++   PD  +Y+ L+ +HC+  ++  A +L  +M 
Sbjct: 334 NAVIRLLCDLGE-INEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMD 392

Query: 363 EDEIPTSHKLYNMLIRASIRELKFERALYYWEDIEAKGLVKNVSNYCAMIHELL-KLGWT 539
           ++  P     YNML++  I   +F+ A+  W+ +E +G     + Y  MIH L  K G  
Sbjct: 393 KELCPPDRHSYNMLLKMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLASKKGRA 452

Query: 540 HEAVHFFNEMIKKAIPPYVYTCKFMMHCLVKLDDQNAMYIFHDRMKRSMSSDIQDLS 710
            +A  +F  M+ + IPPY  TC+ +   L+ L  ++ + +  DRM+RS S  IQ++S
Sbjct: 453 EDACSYFVRMVDEGIPPYQATCEVLRDRLLMLGLRDQLGVLTDRMRRSTSYTIQEMS 509



 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 43/187 (22%), Positives = 81/187 (43%)
 Frame = +3

Query: 75  YTALILALCEAKKLKVAIRTLIRSDRYGFTPSVTAYNAIIEQLCTSQDTLEEARQIMDSM 254
           YT LI      KK + A        + G    V  YNA+I+ LC   D      Q+ +  
Sbjct: 227 YTILISGWAVVKKPENARSLFDEMVKRGVELDVHVYNALIDALCRGGDITSAQEQLSNMQ 286

Query: 255 LSKDVLPDFRTYSHLICSHCQFGQLRIASKLFDKMLEDEIPTSHKLYNMLIRASIRELKF 434
            S  ++P+  TY   + + C    +R A ++ D+M    +  +   YN +IR      + 
Sbjct: 287 KSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEI 346

Query: 435 ERALYYWEDIEAKGLVKNVSNYCAMIHELLKLGWTHEAVHFFNEMIKKAIPPYVYTCKFM 614
             A    ++I  +G   +V +Y  +++   KL   ++A+   + M K+  PP  ++   +
Sbjct: 347 NEAYNILDEITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNML 406

Query: 615 MHCLVKL 635
           +  L+ +
Sbjct: 407 LKMLISV 413