BLASTX nr result
ID: Ephedra28_contig00021702
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00021702
(773 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 55 2e-15
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 55 2e-15
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 55 2e-15
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat... 55 2e-15
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 55 3e-15
emb|CAN79644.1| hypothetical protein VITISV_033788 [Vitis vinifera] 57 5e-15
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group] 55 5e-15
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 55 8e-15
gb|ABG37663.1| CCHC-type integrase [Populus trichocarpa] 57 3e-14
emb|CAN62421.1| hypothetical protein VITISV_020606 [Vitis vinifera] 56 4e-14
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera] 55 8e-14
emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera] 54 1e-13
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 56 1e-13
emb|CAN74767.1| hypothetical protein VITISV_041860 [Vitis vinifera] 57 1e-13
emb|CAN72675.1| hypothetical protein VITISV_020405 [Vitis vinifera] 56 1e-13
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 51 3e-13
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 51 3e-13
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 51 3e-13
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 51 3e-13
gb|AAF18630.1|AC006228_1 F5J5.1 [Arabidopsis thaliana] 55 4e-13
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 55.1 bits (131), Expect(2) = 2e-15
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N D RSL
Sbjct: 991 MEVHQSDEGIFISQRKYAENILKKFKMDNYKSVTTPLLPNEKQKARDGADKADPTIYRSL 1050
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 1051 VGSLLYLTATRPDIMFAASLLSRYMSSP 1078
Score = 54.3 bits (129), Expect(2) = 2e-15
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
L A +L+YIKGT +Y ++Y KL GY D++WAGCLD +K+ G F
Sbjct: 1081 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAF 1134
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 54.7 bits (130), Expect(2) = 2e-15
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N D RSL
Sbjct: 1078 MEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSL 1137
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 1138 VGSLLYLTATRPDIMFAASLLSRYMSSP 1165
Score = 54.3 bits (129), Expect(2) = 2e-15
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
L A +L+YIKGT +Y ++Y KL GY D++WAGCLD +K+ G F
Sbjct: 1168 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAF 1221
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 54.7 bits (130), Expect(2) = 2e-15
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N D RSL
Sbjct: 1057 MEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSL 1116
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 1117 VGSLLYLTATRPDIMFAASLLSRYMSSP 1144
Score = 54.3 bits (129), Expect(2) = 2e-15
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
L A +L+YIKGT +Y ++Y KL GY D++WAGCLD +K+ G F
Sbjct: 1147 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAF 1200
>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708461|gb|ABF96256.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1167
Score = 54.7 bits (130), Expect(2) = 2e-15
Identities = 29/88 (32%), Positives = 49/88 (55%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N +D RSL
Sbjct: 910 MEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKVDPTIYRSL 969
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 970 VGSLLYLTATRPDIMFAASLLSRYMSSP 997
Score = 54.3 bits (129), Expect(2) = 2e-15
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
L A +L+YIKGT +Y ++Y KL GY D++WAGCLD +K+ G F
Sbjct: 1000 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAF 1053
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 54.7 bits (130), Expect(2) = 3e-15
Identities = 29/88 (32%), Positives = 49/88 (55%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N +D RSL
Sbjct: 868 MEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKVDPTIYRSL 927
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 928 VGSLLYLTATRPDIMFAASLLSRYMSSP 955
Score = 53.9 bits (128), Expect(2) = 3e-15
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
L A +L+YIKGT +Y ++Y KL GY D++WAGCLD +K G F
Sbjct: 958 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGTSGYAF 1011
>emb|CAN79644.1| hypothetical protein VITISV_033788 [Vitis vinifera]
Length = 1181
Score = 56.6 bits (135), Expect(2) = 5e-15
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = -3
Query: 561 GIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSLIGSLVYLT 382
GI++ Q YA +++++F+LE+ ++ QN + A RSL+GSL+YL
Sbjct: 909 GIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLX 968
Query: 381 VTRLHI*PVISVISRYLSKPRISHNG 304
VTR + S++SR+LS PR H G
Sbjct: 969 VTRPDLMFPASLLSRFLSSPRNVHMG 994
Score = 51.2 bits (121), Expect(2) = 5e-15
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
M VA +L+Y+KGT N ++Y +KL GY D++W G +DY+K+ G F
Sbjct: 993 MGVAKRVLKYVKGTTNLGIWYLKTGGVKLDGYADSDWVGSVDYMKSTSGYVF 1044
>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1136
Score = 54.7 bits (130), Expect(2) = 5e-15
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N D RSL
Sbjct: 862 MEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPLLPNEKQKARDGADKADPTIYRSL 921
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 922 VGSLLYLTATRPDIMFAASLLSRYMSSP 949
Score = 53.1 bits (126), Expect(2) = 5e-15
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
L A +L+YIKGT Y ++Y KL GY D++WAGCLD +K+ G F
Sbjct: 952 LNFTAAKRVLRYIKGTAYYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAF 1005
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 54.7 bits (130), Expect(2) = 8e-15
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ V + +GI++ Q YA ++++F+++N S++ N D RSL
Sbjct: 941 MEVHQSDEGIFISQRKYAKNILKKFKMDNCKSVTTPLLPNEKQKARYGADKADPTIYRSL 1000
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKP 322
+GSL+YLT TR I S++SRY+S P
Sbjct: 1001 VGSLLYLTATRPDIMFAASLLSRYMSSP 1028
Score = 52.4 bits (124), Expect(2) = 8e-15
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = -1
Query: 314 LTMEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA 171
L A +L+YIKGT +Y ++Y KL GY D++WAGCLD +K+
Sbjct: 1031 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKS 1078
>gb|ABG37663.1| CCHC-type integrase [Populus trichocarpa]
Length = 2037
Score = 57.0 bits (136), Expect(2) = 3e-14
Identities = 29/94 (30%), Positives = 51/94 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ + GI++ Q YA ++++RF+LE+ ++ L QN + A RSL
Sbjct: 1508 MEIHQCSSGIFISQRKYAVDILKRFKLESCKEVTTLMAQNEKISKNDGEKLEEPSAYRSL 1567
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISHNG 304
+GSL+YLT T+ + + ++SR++S P H G
Sbjct: 1568 VGSLLYLTATKPDLMFLAGLLSRFMSSPSNFHMG 1601
Score = 48.1 bits (113), Expect(2) = 3e-14
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
M VA +L+YI+GT N + YS + L+GY D++WAG +D +K+ G F
Sbjct: 1600 MGVAKRVLKYIRGTTNLGILYSKSGGVNLSGYADSDWAGSVDDMKSTFGYVF 1651
>emb|CAN62421.1| hypothetical protein VITISV_020606 [Vitis vinifera]
Length = 1798
Score = 56.2 bits (134), Expect(2) = 4e-14
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = -3
Query: 561 GIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSLIGSLVYLT 382
GI++ Q YA +++++F+LE+ ++ QN + A RSL+ SL+YLT
Sbjct: 1161 GIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVSSLLYLT 1220
Query: 381 VTRLHI*PVISVISRYLSKPRISHNG 304
+TR + S++SR+LS PR H G
Sbjct: 1221 ITRPDLMFPASLLSRFLSSPRNVHMG 1246
Score = 48.5 bits (114), Expect(2) = 4e-14
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
M VA +L+Y+KGT N ++Y +KL GY D++WAG +D +K+ G F
Sbjct: 1245 MGVAKRVLKYVKGTTNLGIWYLKTGGVKLDGYXDSDWAGSVDDMKSXSGYVF 1296
>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
Length = 2041
Score = 54.7 bits (130), Expect(2) = 8e-14
Identities = 29/86 (33%), Positives = 49/86 (56%)
Frame = -3
Query: 561 GIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSLIGSLVYLT 382
GI++ Q YA +++++F+LE+ ++ QN + A RSL+GSL+YLT
Sbjct: 1769 GIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLT 1828
Query: 381 VTRLHI*PVISVISRYLSKPRISHNG 304
VT+ + S++SR++S P H G
Sbjct: 1829 VTKPDLMFPASLLSRFMSSPSNVHMG 1854
Score = 48.9 bits (115), Expect(2) = 8e-14
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
M VA +L+Y+KGT N ++Y +KL GY D++WAG +D +K+ G F
Sbjct: 1853 MGVAKRVLKYLKGTTNLGIWYLKTGGVKLDGYADSDWAGSVDDMKSTSGYAF 1904
>emb|CAN80930.1| hypothetical protein VITISV_005279 [Vitis vinifera]
Length = 1291
Score = 53.5 bits (127), Expect(2) = 1e-13
Identities = 29/86 (33%), Positives = 48/86 (55%)
Frame = -3
Query: 561 GIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSLIGSLVYLT 382
GI++ Q YA +++++F+LE+ ++ QN + A RSL+G L+YLT
Sbjct: 1001 GIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGILLYLT 1060
Query: 381 VTRLHI*PVISVISRYLSKPRISHNG 304
VTR + S++SR++S P H G
Sbjct: 1061 VTRPDLMFPASLLSRFMSSPSNVHMG 1086
Score = 49.7 bits (117), Expect(2) = 1e-13
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPF 153
M VA +L+Y+KGT N ++Y +KL GY D++WAG +D +K+ G F
Sbjct: 1085 MGVAKRVLKYVKGTTNLGIWYLKSGGVKLNGYADSDWAGSVDDMKSTSGYAF 1136
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 56.2 bits (134), Expect(3) = 1e-13
Identities = 30/92 (32%), Positives = 50/92 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ VK + I+L Q+ YA ++++F +EN + + +D+K RS+
Sbjct: 1300 LQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSM 1359
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISH 310
IGSL+YLT +R I + V +RY + P+ISH
Sbjct: 1360 IGSLLYLTASRPDITYAVGVCARYQANPKISH 1391
Score = 43.1 bits (100), Expect(3) = 1e-13
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -1
Query: 290 ILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPFY 150
IL+Y+ GT +Y + Y S L GY DA+WAG D K+ G FY
Sbjct: 1398 ILKYVNGTSDYGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFY 1444
Score = 23.1 bits (48), Expect(3) = 1e-13
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 160 CHSIRRQSLQRVSNK*TCITLSTSETE*MATIIAVQQL 47
C + + S K C++LST+E E +A + QL
Sbjct: 1442 CFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQL 1479
>emb|CAN74767.1| hypothetical protein VITISV_041860 [Vitis vinifera]
Length = 1945
Score = 57.4 bits (137), Expect(2) = 1e-13
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = -3
Query: 561 GIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSLIGSLVYLT 382
GI++ Q YA +++++F+LE+ ++ QN + A RSL+GSL+YLT
Sbjct: 1124 GIFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLT 1183
Query: 381 VTRLHI*PVISVISRYLSKPRISHNGSS 298
VTR + S++SR+LS P H G S
Sbjct: 1184 VTRPDLMFPTSLLSRFLSSPSNVHMGVS 1211
Score = 45.4 bits (106), Expect(2) = 1e-13
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA 171
M V+ +L+Y+KGT N ++Y +KL GY D++WAG +D +K+
Sbjct: 1208 MGVSKRVLKYVKGTTNLGIWYLKTVGVKLDGYADSDWAGSVDDMKS 1253
>emb|CAN72675.1| hypothetical protein VITISV_020405 [Vitis vinifera]
Length = 1919
Score = 55.8 bits (133), Expect(2) = 1e-13
Identities = 30/85 (35%), Positives = 49/85 (57%)
Frame = -3
Query: 558 IYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSLIGSLVYLTV 379
I++ Q YA +++++F+LE+ ++ QN + A RSL+GSL+YLTV
Sbjct: 1396 IFISQRKYAMDILKKFKLESCKEVATPLAQNEKISKNDGEKLEEPSAYRSLVGSLLYLTV 1455
Query: 378 TRLHI*PVISVISRYLSKPRISHNG 304
TR + S++SR++S PR H G
Sbjct: 1456 TRPDLMFPASLLSRFMSSPRNVHMG 1480
Score = 47.0 bits (110), Expect(2) = 1e-13
Identities = 20/49 (40%), Positives = 31/49 (63%)
Frame = -1
Query: 308 MEVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HG 162
M VA +L+Y+KGT N ++Y +KL GY D++W G +D +K+ G
Sbjct: 1479 MGVAKRVLKYVKGTTNLGIWYLKIXGVKLDGYADSDWVGSVDDMKSTSG 1527
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 28/92 (30%), Positives = 46/92 (50%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
I VK GI++ Q YA E++++F++++ + +D +SL
Sbjct: 1070 IEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1129
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISH 310
+GSL YLT TR I + V+SRY+ P +H
Sbjct: 1130 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTH 1161
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -1
Query: 305 EVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPFY 150
+ A IL+YIKGT+N+ ++YS KL GY D++W G +D K+ G FY
Sbjct: 1163 KAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFY 1214
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 28/92 (30%), Positives = 46/92 (50%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
I VK GI++ Q YA E++++F++++ + +D +SL
Sbjct: 1070 IEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1129
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISH 310
+GSL YLT TR I + V+SRY+ P +H
Sbjct: 1130 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTH 1161
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -1
Query: 305 EVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPFY 150
+ A IL+YIKGT+N+ ++YS KL GY D++W G +D K+ G FY
Sbjct: 1163 KAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFY 1214
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 28/92 (30%), Positives = 46/92 (50%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
I VK GI++ Q YA E++++F++++ + +D +SL
Sbjct: 1070 IEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1129
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISH 310
+GSL YLT TR I + V+SRY+ P +H
Sbjct: 1130 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTH 1161
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -1
Query: 305 EVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPFY 150
+ A IL+YIKGT+N+ ++YS KL GY D++W G +D K+ G FY
Sbjct: 1163 KAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFY 1214
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 28/92 (30%), Positives = 46/92 (50%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
I VK GI++ Q YA E++++F++++ + +D +SL
Sbjct: 1038 IEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSL 1097
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISH 310
+GSL YLT TR I + V+SRY+ P +H
Sbjct: 1098 VGSLRYLTCTRPDILYAVGVVSRYMEHPTTTH 1129
Score = 50.8 bits (120), Expect(2) = 3e-13
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -1
Query: 305 EVAIHILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPFY 150
+ A IL+YIKGT+N+ ++YS KL GY D++W G +D K+ G FY
Sbjct: 1131 KAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFY 1182
>gb|AAF18630.1|AC006228_1 F5J5.1 [Arabidopsis thaliana]
Length = 1463
Score = 55.1 bits (131), Expect(3) = 4e-13
Identities = 29/92 (31%), Positives = 50/92 (54%)
Frame = -3
Query: 585 ISVKYTKQGIYL*QAMYASELIRRFQLENKPSISILSTQNXXXXXXXXXXXIDEKACRSL 406
+ +K T +G+++ Q+MYA LI+RF ++ + + +DEK R +
Sbjct: 1199 LQIKQTDEGVHISQSMYAQGLIQRFGMQTAKTSKTPMSATAKLSADEAGLSVDEKMYRGM 1258
Query: 405 IGSLVYLTVTRLHI*PVISVISRYLSKPRISH 310
IGSL+YLT +R + + V +RY + P+ SH
Sbjct: 1259 IGSLLYLTASRPDLCFSVGVCARYQANPKQSH 1290
Score = 41.2 bits (95), Expect(3) = 4e-13
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = -1
Query: 290 ILQYIKGTLNYDMYYSDFDSLKLTGYVDANWAGCLDYLKA*HGMPFY 150
IL+Y+KGT + ++YS + L G+ DA+WAG LD ++ G F+
Sbjct: 1297 ILKYVKGTTDVGLFYSKQTNQNLVGFCDADWAGNLDDRRSTTGGCFF 1343
Score = 24.6 bits (52), Expect(3) = 4e-13
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 160 CHSIRRQSLQRVSNK*TCITLSTSETE*MATIIAVQQLN*CEKLRSDFAI 11
C +R + S K +C++LST+E E +A QL +++ D+ +
Sbjct: 1341 CFFLRNNLVSWHSKKQSCVSLSTAEAEYIALGSCCTQLLWMKQMLLDYGM 1390