BLASTX nr result
ID: Ephedra28_contig00021290
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00021290
(388 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004699176.1| RNP-1 like RNA-binding protein [Treponema ca... 70 3e-10
ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema az... 69 5e-10
ref|WP_010253056.1| RNA-binding protein [Treponema primitia] 69 8e-10
gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytric... 67 3e-09
ref|XP_006478116.1| PREDICTED: glycine-rich RNA-binding protein ... 66 4e-09
emb|CDJ82838.1| RNA recognition motif domain containing protein ... 66 4e-09
ref|XP_004976601.1| PREDICTED: glycine-rich RNA-binding protein-... 66 4e-09
gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar... 66 5e-09
emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis] 65 7e-09
gb|EFW22034.1| polyadenylation factor subunit CstF64 [Coccidioid... 65 7e-09
gb|ETX00256.1| RNA-binding protein [Candidatus Entotheonella sp.... 65 9e-09
ref|XP_006441346.1| hypothetical protein CICLE_v10022555mg [Citr... 65 9e-09
ref|XP_006855610.1| hypothetical protein AMTR_s00044p00073410 [A... 65 9e-09
ref|YP_431499.1| RNA-binding protein [Hahella chejuensis KCTC 23... 65 9e-09
ref|XP_003066112.1| RNA recognition motif containing protein [Co... 65 9e-09
ref|XP_001247252.1| hypothetical protein CIMG_01023 [Coccidioide... 65 9e-09
ref|NP_502432.1| Protein RBD-1 [Caenorhabditis elegans] gi|38800... 65 9e-09
ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovo... 64 2e-08
gb|ADE77701.1| unknown [Picea sitchensis] 64 2e-08
ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protei... 64 2e-08
>ref|YP_004699176.1| RNP-1 like RNA-binding protein [Treponema caldaria DSM 7334]
gi|503735870|ref|WP_013969946.1| RNA-binding protein
[Treponema caldaria] gi|338835490|gb|AEJ20668.1| RNP-1
like RNA-binding protein [Treponema caldaria DSM 7334]
Length = 116
Score = 70.1 bits (170), Expect = 3e-10
Identities = 29/85 (34%), Positives = 54/85 (63%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++G +S E+ +R++F FG++ ++ ETG KG+ F+E +T+EEA AA+AG
Sbjct: 26 LYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAIAGT 85
Query: 181 HGNYFRGRRMRVELHSGELRNKQED 255
+G F GR++RV + R ++++
Sbjct: 86 NGREFEGRQLRVNEAMDKPRRERDN 110
>ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|505824900|ref|WP_015710278.1| RNA-binding protein
[Treponema azotonutricium] gi|333734416|gb|AEF80365.1|
RNP-1 like RNA-binding protein [Treponema azotonutricium
ZAS-9]
Length = 100
Score = 69.3 bits (168), Expect = 5e-10
Identities = 28/72 (38%), Positives = 50/72 (69%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++G +S E+ +R++F +FG +T ++ E+G+ KG+ FIE +T+EEA AA+ G
Sbjct: 5 LYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGT 64
Query: 181 HGNYFRGRRMRV 216
+G+ F GR++RV
Sbjct: 65 NGHEFEGRQLRV 76
>ref|WP_010253056.1| RNA-binding protein [Treponema primitia]
Length = 99
Score = 68.6 bits (166), Expect = 8e-10
Identities = 29/72 (40%), Positives = 48/72 (66%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++G +S E+ +R++F +FG++ ++ ETG KG+ FIE T+EEA AA+AG
Sbjct: 5 LYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAIAGT 64
Query: 181 HGNYFRGRRMRV 216
+G F GR++RV
Sbjct: 65 NGREFDGRQLRV 76
>gb|EJY69916.1| RNA binding domain-containing protein 28 [Oxytricha trifallax]
Length = 732
Score = 66.6 bits (161), Expect = 3e-09
Identities = 29/64 (45%), Positives = 46/64 (71%)
Frame = +1
Query: 28 VKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGMHGNYFRGRR 207
+KE H++ FQKFGTI +N+ + +E +G+ FIEF+T+EEA+ A+ GM+G ++GR
Sbjct: 41 LKEPHLKKEFQKFGTIVAVNVPIKNENNLNRGFGFIEFSTKEEAQKAIDGMNGQKYKGRV 100
Query: 208 MRVE 219
+ VE
Sbjct: 101 LAVE 104
>ref|XP_006478116.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
isoform X1 [Citrus sinensis]
Length = 171
Score = 66.2 bits (160), Expect = 4e-09
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+F+ G+S E+ +R+ FQ FG + ++NLV+ +G+AF+ +ATEEE++ A+ GM
Sbjct: 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLVMDKIANRPRGFAFLRYATEEESRRAIEGM 139
Query: 181 HGNYFRGRRMRVELHSGELRNKQ 249
HG + GR + VE+ +Q
Sbjct: 140 HGKFLDGRVIFVEIAKSRAELRQ 162
>emb|CDJ82838.1| RNA recognition motif domain containing protein [Haemonchus
contortus]
Length = 878
Score = 66.2 bits (160), Expect = 4e-09
Identities = 32/90 (35%), Positives = 52/90 (57%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
IF+ + KEE + +F+KFG I ++ +++ +TG CKG+A +EF E A AA A
Sbjct: 284 IFVRNLPFTTKEEDLHFLFKKFGEIAEIQVIIDKKTGNCKGFAIVEFVFPESAVAAYASA 343
Query: 181 HGNYFRGRRMRVELHSGELRNKQEDASSEA 270
G F+GR M + + E R K++ +E+
Sbjct: 344 DGTIFKGRMMHI-IPGSEKREKKDPEKTES 372
>ref|XP_004976601.1| PREDICTED: glycine-rich RNA-binding protein-like [Setaria italica]
Length = 147
Score = 66.2 bits (160), Expect = 4e-09
Identities = 29/74 (39%), Positives = 49/74 (66%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++ G+S EE +R+ F+KFG +T++NLV+ +G+AF+ +A EE+ K A+ GM
Sbjct: 67 LYVHGLSFRTTEESLRNAFEKFGDLTEVNLVMDRAAKRPRGFAFVSYADEEQTKTAIEGM 126
Query: 181 HGNYFRGRRMRVEL 222
HG + GR + VE+
Sbjct: 127 HGKFLDGRVIFVEV 140
>gb|EIE89793.1| hypothetical protein RO3G_14504 [Rhizopus delemar RA 99-880]
Length = 292
Score = 65.9 bits (159), Expect = 5e-09
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTIT-KMNLVVHHETGTCKGYAFIEFATEEEAKAAVAG 177
+F+ +S E+ ++ F+KFGTI ++ L + +TG +G A+I+F TE+EA+AAV G
Sbjct: 175 VFVANLSYDTDEDSLKQAFEKFGTIVGEIGLPISRDTGRIRGIAYIQFETEDEAEAAVKG 234
Query: 178 MHGNYFRGRRMRVELHSGELRNK 246
M+G Y GR +R + RN+
Sbjct: 235 MNGVYLDGRPIRTDFSGDNDRNR 257
>emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
Length = 196
Score = 65.5 bits (158), Expect = 7e-09
Identities = 30/74 (40%), Positives = 49/74 (66%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+F+ G+S EE +R F++FG +T++NLV+ +G+AF+ +A EEE+K A+ GM
Sbjct: 118 LFIEGLSFRTTEESLRSAFERFGQLTEVNLVMDRVAKRPRGFAFLSYANEEESKNAMEGM 177
Query: 181 HGNYFRGRRMRVEL 222
HG + GR + VE+
Sbjct: 178 HGKFLDGRVIFVEV 191
>gb|EFW22034.1| polyadenylation factor subunit CstF64 [Coccidioides posadasii str.
Silveira]
Length = 307
Score = 65.5 bits (158), Expect = 7e-09
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+FLG + + EE V+ + GT+TK L+V+ ETG KGY F +FA + A +AV +
Sbjct: 10 VFLGNIPYTLTEEQVKDILSSAGTVTKFRLMVNPETGKPKGYGFADFADADAAASAVRNL 69
Query: 181 HGNYFRGRRMRVEL-HSGELRNKQEDASSEAQVSSEG 288
+ GR++RV+ H+ E + D S + Q S+ G
Sbjct: 70 NDYEIMGRKIRVDWPHNNEKDSVPLDYSQQGQASAAG 106
>gb|ETX00256.1| RNA-binding protein [Candidatus Entotheonella sp. TSY1]
Length = 105
Score = 65.1 bits (157), Expect = 9e-09
Identities = 28/72 (38%), Positives = 47/72 (65%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
I++G + V E VR +F+ GT+ +NL+ ETG +G+ F+E +++EEA AA+A +
Sbjct: 5 IYVGNLPFSVTPEEVRDLFEIHGTVESVNLITDRETGRLRGFGFVEMSSDEEASAAIAAL 64
Query: 181 HGNYFRGRRMRV 216
HG+ +GR + V
Sbjct: 65 HGSQCQGRTLTV 76
>ref|XP_006441346.1| hypothetical protein CICLE_v10022555mg [Citrus clementina]
gi|567897718|ref|XP_006441347.1| hypothetical protein
CICLE_v10022555mg [Citrus clementina]
gi|557543608|gb|ESR54586.1| hypothetical protein
CICLE_v10022555mg [Citrus clementina]
gi|557543609|gb|ESR54587.1| hypothetical protein
CICLE_v10022555mg [Citrus clementina]
Length = 171
Score = 65.1 bits (157), Expect = 9e-09
Identities = 29/83 (34%), Positives = 51/83 (61%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+F+ G+S E+ +R+ FQ FG + ++NL++ +G+AF+ +ATEEE++ A+ GM
Sbjct: 80 LFVSGLSFRTSEDSLRNAFQGFGQLVEVNLMMDKIANRPRGFAFLRYATEEESRRAIEGM 139
Query: 181 HGNYFRGRRMRVELHSGELRNKQ 249
HG + GR + VE+ +Q
Sbjct: 140 HGKFLDGRVIFVEIAKSRAELRQ 162
>ref|XP_006855610.1| hypothetical protein AMTR_s00044p00073410 [Amborella trichopoda]
gi|548859397|gb|ERN17077.1| hypothetical protein
AMTR_s00044p00073410 [Amborella trichopoda]
Length = 170
Score = 65.1 bits (157), Expect = 9e-09
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++ G+S EE +R+ F+ FG + ++ LV+ +G+AF+E+ATEEE++ A+ GM
Sbjct: 79 LYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDKRANRPRGFAFLEYATEEESRQAIEGM 138
Query: 181 HGNYFRGRRMRVEL 222
HG + GR + VE+
Sbjct: 139 HGKFLDGRVIFVEV 152
>ref|YP_431499.1| RNA-binding protein [Hahella chejuensis KCTC 2396]
gi|499713417|ref|WP_011394151.1| RNA-binding protein
[Hahella chejuensis] gi|83631107|gb|ABC27074.1|
RNA-binding protein (RRM domain) [Hahella chejuensis
KCTC 2396]
Length = 90
Score = 65.1 bits (157), Expect = 9e-09
Identities = 27/72 (37%), Positives = 44/72 (61%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
I++G ++ V EE +R F FG +T NL++ TG KG+AF+E + EA AA+ G+
Sbjct: 3 IYVGNLAYGVTEEELREAFSSFGEVTSANLIIDRNTGQSKGFAFVEMSNNSEADAAIKGL 62
Query: 181 HGNYFRGRRMRV 216
+ +GR ++V
Sbjct: 63 NDTALKGRNIKV 74
>ref|XP_003066112.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp] gi|240105774|gb|EER23967.1| RNA
recognition motif containing protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 307
Score = 65.1 bits (157), Expect = 9e-09
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+FLG + + EE V+ + GT+TK L+++ ETG KGY F +FA + A +AV +
Sbjct: 10 VFLGNIPYTLTEEQVKDILSSAGTVTKFRLMINPETGKPKGYGFADFADADAAASAVRNL 69
Query: 181 HGNYFRGRRMRVEL-HSGELRNKQEDASSEAQVSSEG 288
+ GR++RV+ H+ E + D S + Q S+ G
Sbjct: 70 NDYEIMGRKIRVDWPHNNEKDSVPLDYSQQGQASAAG 106
>ref|XP_001247252.1| hypothetical protein CIMG_01023 [Coccidioides immitis RS]
gi|392863509|gb|EAS35737.2| polyadenylation factor
subunit CstF64 [Coccidioides immitis RS]
Length = 307
Score = 65.1 bits (157), Expect = 9e-09
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+FLG + + EE V+ + GT+TK L+++ ETG KGY F +FA + A +AV +
Sbjct: 10 VFLGNIPYTLTEEQVKDILSSAGTVTKFRLMINPETGKPKGYGFADFADADAAASAVRNL 69
Query: 181 HGNYFRGRRMRVEL-HSGELRNKQEDASSEAQVSSEG 288
+ GR++RV+ H+ E + D S + Q S+ G
Sbjct: 70 NDYEIMGRKIRVDWPHNNEKDSVPLDYSQQGQASAAG 106
>ref|NP_502432.1| Protein RBD-1 [Caenorhabditis elegans] gi|3880097|emb|CAB05631.1|
Protein RBD-1 [Caenorhabditis elegans]
Length = 872
Score = 65.1 bits (157), Expect = 9e-09
Identities = 31/89 (34%), Positives = 54/89 (60%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+FL + KE+ ++ +F+K+G ++++ +V+ +TG CKG+A +EF E A AA + +
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340
Query: 181 HGNYFRGRRMRVELHSGELRNKQEDASSE 267
G F+GR M + L E R K+ + SE
Sbjct: 341 DGYVFKGRMMHI-LPGDEKRTKEGEEESE 368
>ref|YP_007021289.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|504902405|ref|WP_015089507.1| RNA-binding protein
[Bdellovibrio bacteriovorus] gi|425858986|gb|AFY00022.1|
RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 104
Score = 64.3 bits (155), Expect = 2e-08
Identities = 28/72 (38%), Positives = 47/72 (65%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
I++G +S V ++ + VF +FGT+ +N++ ETG KG+AF+E +TE EA+AA+ +
Sbjct: 5 IYVGNLSFNVDQDQLNQVFAEFGTVDTVNVITDRETGRSKGFAFVEMSTETEARAAIEKL 64
Query: 181 HGNYFRGRRMRV 216
+G GR M +
Sbjct: 65 NGMDLAGRAMNI 76
>gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++G +S V EE + VF + G + +V ETG +G+ FI F+T+ EA+AAVA +
Sbjct: 218 VYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASL 277
Query: 181 HGNYFRGRRMRVEL 222
+G GR MRV+L
Sbjct: 278 NGKELEGRAMRVDL 291
>ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product
[Vitis vinifera]
Length = 170
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 IFLGGMSKWVKEEHVRHVFQKFGTITKMNLVVHHETGTCKGYAFIEFATEEEAKAAVAGM 180
+++ G+S EE +R+ F+ FG + ++NLV+ +G+AF+ ++TEEE++ A+ GM
Sbjct: 81 LYVSGLSFRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGM 140
Query: 181 HGNYFRGRRMRVELHS--GELRNKQ 249
HG + GR + VE+ ELR Q
Sbjct: 141 HGKFLDGRVIFVEVAKPRSELRQNQ 165