BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00021203
         (558 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Eph...   366   2e-99
dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwits...   287   1e-75
ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mir...   287   1e-75
ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [G...   275   5e-72
dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ...   273   3e-71
ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifoliu...   273   3e-71
ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [P...   248   7e-64
ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Pic...   248   7e-64
ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensi...   248   7e-64
ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Lar...   247   1e-63
gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]       247   1e-63
gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   247   2e-63
gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   247   2e-63
ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]...   247   2e-63
gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var...   247   2e-63
ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis] ...   246   2e-63
gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   246   2e-63
gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   246   2e-63
gb|AET48742.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   246   2e-63
gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus ...   246   2e-63

>ref|YP_002519950.1| RNA polymerase beta chain (chloroplast) [Ephedra equisetina]
            gi|220983551|dbj|BAH11318.1| RNA polymerase beta chain
            (chloroplast) [Ephedra equisetina]
          Length = 1100

 Score =  366 bits (940), Expect = 2e-99
 Identities = 183/185 (98%), Positives = 185/185 (100%)
 Frame = -2

Query: 557  SYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSI 378
            SYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSI
Sbjct: 469  SYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSI 528

Query: 377  GVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEGR 198
            GVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQ+ALDSRILATSIQEGR
Sbjct: 529  GVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQVALDSRILATSIQEGR 588

Query: 197  IEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTIG 18
            IEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQ+PQVNQGNYVKRGQFMADGSTTIG
Sbjct: 589  IEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQKPQVNQGNYVKRGQFMADGSTTIG 648

Query: 17   GELCL 3
            GELCL
Sbjct: 649  GELCL 653


>dbj|BAH11233.1| RNA polymerase beta chain (chloroplast) [Welwitschia mirabilis]
          Length = 1108

 Score =  287 bits (735), Expect = 1e-75
 Identities = 138/185 (74%), Positives = 161/185 (87%)
 Frame = -2

Query: 557  SYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSI 378
            SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP QYFSI
Sbjct: 476  SYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPFQYFSI 535

Query: 377  GVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEGR 198
            GVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS  LA S QEGR
Sbjct: 536  GVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAISKQEGR 595

Query: 197  IEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTIG 18
            I+Y D++TI+SS    T +  L+ YQRSNSN L++Q+P +NQG Y+K+GQ +ADG+ T+G
Sbjct: 596  IKYIDAETIISSSKGSTTQIELQTYQRSNSNTLMYQKPHINQGKYIKKGQILADGAVTVG 655

Query: 17   GELCL 3
            GE+CL
Sbjct: 656  GEICL 660


>ref|YP_001876572.1| RNA polymerase beta subunit [Welwitschia mirabilis]
            gi|163311627|gb|ABY26785.1| RNA polymerase beta subunit
            [Welwitschia mirabilis]
          Length = 1108

 Score =  287 bits (735), Expect = 1e-75
 Identities = 138/185 (74%), Positives = 161/185 (87%)
 Frame = -2

Query: 557  SYLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSI 378
            SYLLP+ED++YRIAL N LAVD K+PEKKNTPTQYRQ+FLS+AWEQIHFRSILP QYFSI
Sbjct: 476  SYLLPSEDESYRIALGNFLAVDQKIPEKKNTPTQYRQEFLSIAWEQIHFRSILPFQYFSI 535

Query: 377  GVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEGR 198
            GVSLIPFLEHNDATRALMGSNMQRQAVP LQPEKCIVGTGLE Q+ALDS  LA S QEGR
Sbjct: 536  GVSLIPFLEHNDATRALMGSNMQRQAVPPLQPEKCIVGTGLESQVALDSGNLAISKQEGR 595

Query: 197  IEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTIG 18
            I+Y D++TI+SS    T +  L+ YQRSNSN L++Q+P +NQG Y+K+GQ +ADG+ T+G
Sbjct: 596  IKYIDAETIISSSKGNTTQIELQTYQRSNSNTLMYQKPHINQGKYIKKGQILADGAVTVG 655

Query: 17   GELCL 3
            GE+CL
Sbjct: 656  GEICL 660


>ref|YP_008082190.1| RNA polymerase beta subunit (chloroplast) [Gnetum montanum]
            gi|490345015|gb|AGL11035.1| RNA polymerase beta subunit
            (chloroplast) [Gnetum montanum]
          Length = 1109

 Score =  275 bits (703), Expect = 5e-72
 Identities = 134/184 (72%), Positives = 154/184 (83%)
 Frame = -2

Query: 554  YLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSIG 375
            YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  LPLQYFSIG
Sbjct: 478  YLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFSIG 537

Query: 374  VSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEGRI 195
            VSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEGRI
Sbjct: 538  VSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEGRI 597

Query: 194  EYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTIGG 15
            +Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+   +Q  YV++GQ +ADG+ T+GG
Sbjct: 598  QYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHASQAKYVRKGQILADGAATLGG 657

Query: 14   ELCL 3
            E+CL
Sbjct: 658  EICL 661


>dbj|BAN16890.1| RNA polymerase beta chain (chloroplast) [Gnetum ula]
          Length = 1110

 Score =  273 bits (697), Expect = 3e-71
 Identities = 133/184 (72%), Positives = 153/184 (83%)
 Frame = -2

Query: 554  YLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSIG 375
            YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  L LQYFS+G
Sbjct: 479  YLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLTLQYFSVG 538

Query: 374  VSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEGRI 195
            VSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEGRI
Sbjct: 539  VSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEGRI 598

Query: 194  EYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTIGG 15
            +Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+  V+Q  YV++GQ +ADG  T+GG
Sbjct: 599  QYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHVSQAKYVRKGQILADGGATLGG 658

Query: 14   ELCL 3
            E+CL
Sbjct: 659  EICL 662


>ref|YP_002519787.1| RNA polymerase beta chain [Gnetum parvifolium]
            gi|158513793|sp|A6BM50.1|RPOB_GNEPA RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|149941456|dbj|BAF64895.1| RNA polymerase beta subunit
            [Gnetum parvifolium] gi|220983530|dbj|BAH11298.1| RNA
            polymerase beta chain (chloroplast) [Gnetum parvifolium]
          Length = 1108

 Score =  273 bits (697), Expect = 3e-71
 Identities = 133/184 (72%), Positives = 153/184 (83%)
 Frame = -2

Query: 554  YLLPNEDKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFSIG 375
            YL P+ED  YRIAL N L+VD K+PEKKNTPTQY Q+FLS+AWEQIHFR  LPLQYFSIG
Sbjct: 478  YLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQYHQEFLSIAWEQIHFRCFLPLQYFSIG 537

Query: 374  VSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEGRI 195
            VSLIPFLEHNDATRALMGSNMQRQAVP +QPEKCIVGTGLEGQ+ALDS  LA S QEGRI
Sbjct: 538  VSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEGQVALDSGALAISTQEGRI 597

Query: 194  EYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTIGG 15
            +Y D+ TIVS L   T +T L+IYQRSNSN L+HQ+   +Q  YV++GQ +ADG+  +GG
Sbjct: 598  QYSDAATIVSVLKGNTTQTELQIYQRSNSNTLMHQKTHASQAKYVRKGQILADGAAMLGG 657

Query: 14   ELCL 3
            E+CL
Sbjct: 658  EICL 661


>ref|YP_008082826.1| RNA polymerase beta subunit (chloroplast) [Picea abies]
            gi|502524860|emb|CCW23110.1| RNA polymerase beta subunit
            (chloroplast) [Picea abies]
          Length = 1076

 Score =  248 bits (633), Expect = 7e-64
 Identities = 123/186 (66%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 472  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 531

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 532  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVAIATQEG 591

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+ T+
Sbjct: 592  RIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGAATV 651

Query: 20   GGELCL 3
            GGEL L
Sbjct: 652  GGELSL 657


>ref|YP_004891746.1| RNA polymerase beta chain (chloroplast) [Picea morrisonicola]
            gi|307683667|dbj|BAJ19812.1| RNA polymerase beta chain
            [Picea morrisonicola] gi|347977527|dbj|BAK86484.1| RNA
            polymerase beta chain (chloroplast) [Picea morrisonicola]
          Length = 1076

 Score =  248 bits (633), Expect = 7e-64
 Identities = 123/186 (66%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 472  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 531

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 532  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVAIATQEG 591

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+ T+
Sbjct: 592  RIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGAATV 651

Query: 20   GGELCL 3
            GGEL L
Sbjct: 652  GGELSL 657


>ref|YP_002905075.1| RNA polymerase beta subunit [Picea sitchensis]
            gi|226875285|gb|ACO89024.1| RNA polymerase beta subunit
            [Picea sitchensis]
          Length = 1076

 Score =  248 bits (633), Expect = 7e-64
 Identities = 123/186 (66%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 472  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 531

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL QPEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 532  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFQPEKCIAGTGLEGQAALDSGSVAIATQEG 591

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+ T+
Sbjct: 592  RIEYIDAVNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGAATV 651

Query: 20   GGELCL 3
            GGEL L
Sbjct: 652  GGELSL 657


>ref|YP_004891192.1| RNA polymerase beta chain (chloroplast) [Larix decidua]
            gi|307683573|dbj|BAJ19765.1| RNA polymerase beta chain
            [Larix decidua] gi|347977543|dbj|BAK86499.1| RNA
            polymerase beta chain (chloroplast) [Larix decidua]
          Length = 1076

 Score =  247 bits (631), Expect = 1e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 472  YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 531

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 532  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 591

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+ T+
Sbjct: 592  RIEYIDATNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGAATV 651

Query: 20   GGELCL 3
            GGEL L
Sbjct: 652  GGELSL 657


>gb|ACP52193.1| RNA polymerase beta subunit [Larix occidentalis]
          Length = 1076

 Score =  247 bits (631), Expect = 1e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 472  YLLPGEDEDEYYRIATGNYLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 531

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 532  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 591

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T L IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+ T+
Sbjct: 592  RIEYIDATNITSSVNGDTVRTELVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGAATV 651

Query: 20   GGELCL 3
            GGEL L
Sbjct: 652  GGELSL 657


>gb|AET47520.1| RNA polymerase beta subunit (chloroplast) [Pinus lumholtzii]
            gi|356999718|gb|AET47592.1| RNA polymerase beta subunit
            (chloroplast) [Pinus leiophylla]
            gi|357000519|gb|AET48382.1| RNA polymerase beta subunit
            (chloroplast) [Pinus greggii]
          Length = 1074

 Score =  247 bits (630), Expect = 2e-63
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 470  YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHFRSIFPFQYFS 529

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 530  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 589

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ+ QG  VK+GQ +ADG+TT+
Sbjct: 590  RIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIRQGECVKKGQILADGATTV 649

Query: 20   GGELCL 3
            GGEL L
Sbjct: 650  GGELSL 655


>gb|AET45799.1| RNA polymerase beta subunit (chloroplast) [Pinus roxburghii]
          Length = 1075

 Score =  247 bits (630), Expect = 2e-63
 Identities = 121/186 (65%), Positives = 147/186 (79%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNE--DKNYRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP E  D+ YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 471  YLLPGEYEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 530

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 531  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 590

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ++QG +VK+GQ +ADG+TT+
Sbjct: 591  RIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIHQGEFVKKGQILADGATTV 650

Query: 20   GGELCL 3
            GGEL L
Sbjct: 651  GGELSL 656


>ref|YP_004276368.1| RNA polymerase beta subunit [Pinus nelsonii]
            gi|323522686|gb|ADX94934.1| RNA polymerase beta subunit
            [Pinus nelsonii]
          Length = 1075

 Score =  247 bits (630), Expect = 2e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 471  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 530

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 531  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 590

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+TT+
Sbjct: 591  RIEYIDAVNITSSINGNTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGATTV 650

Query: 20   GGELCL 3
            GGEL L
Sbjct: 651  GGELSL 656


>gb|ACP52002.1| RNA polymerase beta subunit [Pinus leiophylla var. chihuahuana]
            gi|356996525|gb|AET44443.1| RNA polymerase beta subunit
            (chloroplast) [Pinus leiophylla var. chihuahuana]
          Length = 1074

 Score =  247 bits (630), Expect = 2e-63
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 470  YLLPGEDEDEYYRIATGNSLALNQGIQEEQTTPARYRQEFIVIAWEQIHFRSIFPFQYFS 529

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 530  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 589

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ+ QG  VK+GQ +ADG+TT+
Sbjct: 590  RIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIRQGECVKKGQILADGATTV 649

Query: 20   GGELCL 3
            GGEL L
Sbjct: 650  GGELSL 655


>ref|NP_817162.1| RNA polymerase beta subunit [Pinus koraiensis]
            gi|41017711|sp|Q85X54.1|RPOB_PINKO RecName:
            Full=DNA-directed RNA polymerase subunit beta; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta; Short=RNA polymerase subunit beta
            gi|29469681|gb|AAO74009.1| RNA polymerase beta subunit
            [Pinus koraiensis] gi|257042642|gb|ACV32912.1| RNA
            polymerase beta subunit [Pinus monticola]
            gi|257042727|gb|ACV32994.1| RNA polymerase beta subunit
            [Pinus monticola] gi|356997033|gb|AET44944.1| RNA
            polymerase beta subunit (chloroplast) [Pinus amamiana]
            gi|356998338|gb|AET46231.1| RNA polymerase beta subunit
            (chloroplast) [Pinus pumila]
          Length = 1075

 Score =  246 bits (629), Expect = 2e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 471  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 530

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 531  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 590

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+TT+
Sbjct: 591  RIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGATTV 650

Query: 20   GGELCL 3
            GGEL L
Sbjct: 651  GGELSL 656


>gb|AET49392.1| RNA polymerase beta subunit (chloroplast) [Pinus fenzeliana var.
            dabeshanensis]
          Length = 1075

 Score =  246 bits (629), Expect = 2e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 471  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 530

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 531  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 590

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+TT+
Sbjct: 591  RIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGATTV 650

Query: 20   GGELCL 3
            GGEL L
Sbjct: 651  GGELSL 656


>gb|AET49321.1| RNA polymerase beta subunit (chloroplast) [Pinus dalatensis]
          Length = 1075

 Score =  246 bits (629), Expect = 2e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 471  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 530

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 531  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 590

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+TT+
Sbjct: 591  RIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGATTV 650

Query: 20   GGELCL 3
            GGEL L
Sbjct: 651  GGELSL 656


>gb|AET48742.1| RNA polymerase beta subunit (chloroplast) [Pinus edulis]
          Length = 1075

 Score =  246 bits (629), Expect = 2e-63
 Identities = 122/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 471  YLLPGEDEDEYYRIATGNSLALNQGIQEEQITPARYRQEFIVIAWEQIHFRSIFPFQYFS 530

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 531  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 590

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQV QG  VK+GQ +ADG+TT+
Sbjct: 591  RIEYIDAVNITSSINGDTVRTESVIYQRSNTNTCTHQKPQVRQGECVKKGQILADGATTV 650

Query: 20   GGELCL 3
            GGEL L
Sbjct: 651  GGELSL 656


>gb|AET47664.1| RNA polymerase beta subunit (chloroplast) [Pinus lawsonii]
            gi|356999864|gb|AET47736.1| RNA polymerase beta subunit
            (chloroplast) [Pinus pringlei]
          Length = 1074

 Score =  246 bits (629), Expect = 2e-63
 Identities = 121/186 (65%), Positives = 146/186 (78%), Gaps = 2/186 (1%)
 Frame = -2

Query: 554  YLLPNEDKN--YRIALENLLAVDHKLPEKKNTPTQYRQDFLSVAWEQIHFRSILPLQYFS 381
            YLLP ED++  YRIA  N LA++  + E++ TP +YRQ+F+ +AWEQIHFRSI P QYFS
Sbjct: 470  YLLPGEDEDEYYRIATGNSLALNQGIQEEQXTPARYRQEFIVIAWEQIHFRSIFPFQYFS 529

Query: 380  IGVSLIPFLEHNDATRALMGSNMQRQAVPLLQPEKCIVGTGLEGQLALDSRILATSIQEG 201
            +GVSLIPFLEHNDA RALMGSNMQRQAVPL +PEKCI GTGLEGQ ALDS  +A + QEG
Sbjct: 530  VGVSLIPFLEHNDANRALMGSNMQRQAVPLFRPEKCIAGTGLEGQAALDSGSVAIATQEG 589

Query: 200  RIEYFDSKTIVSSLNRKTIETILEIYQRSNSNILIHQRPQVNQGNYVKRGQFMADGSTTI 21
            RIEY D+  I SS+N  T+ T   IYQRSN+N   HQ+PQ+ QG  VK+GQ +ADG+TT+
Sbjct: 590  RIEYIDAVNITSSVNGDTVRTESVIYQRSNTNTCTHQKPQIRQGECVKKGQILADGATTV 649

Query: 20   GGELCL 3
            GGEL L
Sbjct: 650  GGELSL 655