BLASTX nr result
ID: Ephedra28_contig00020989
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00020989
(616 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 203 4e-50
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 202 5e-50
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 201 2e-49
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 190 2e-46
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 190 2e-46
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 190 2e-46
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 190 3e-46
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 188 1e-45
ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Popu... 188 1e-45
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 187 3e-45
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 187 3e-45
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 185 1e-44
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 185 1e-44
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 182 8e-44
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 182 8e-44
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 180 2e-43
ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polyme... 180 2e-43
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 175 1e-41
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps... 175 1e-41
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 175 1e-41
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 203 bits (516), Expect = 4e-50
Identities = 104/206 (50%), Positives = 144/206 (69%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKAL 439
I +R SMVKVERD ++ P+ +S E+ + + A LS+ LI LL++GGVP S F L
Sbjct: 478 IQVRPSMVKVERDTDFSRLPSFNSFEMVGTSNRPRGAALSRYLITLLSHGGVPKSCFMFL 537
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
AL+D+ ++ A + Q + D+ V RM+ G+P+ EP+LQ RL + +
Sbjct: 538 IQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGLPLEEPYLQHRLSILMKEE 597
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
K +++GKV L NSYY+MGTADP+G+LK NEVCIILDHGQ+SG VLVYR+PG HFGD+H+
Sbjct: 598 RKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILDHGQISGKVLVYRHPGLHFGDIHV 657
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
+ ATY++++ EIVG+AKF IFFSTQG
Sbjct: 658 FTATYIEDLVEIVGNAKFAIFFSTQG 683
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 202 bits (515), Expect = 5e-50
Identities = 107/206 (51%), Positives = 142/206 (68%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKAL 439
I IR SMVKVE D P DSLEI I + +KAYLS+ LI+LL+YGGV +F L
Sbjct: 501 IHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNKAYLSKNLISLLSYGGVQKEYFMEL 560
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
ALE+ + A K++ + +DDD RM+S+GIP+NEP L+ RL +
Sbjct: 561 LGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMISSGIPLNEPHLRARLSRLAKIE 620
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
+R GK+ + +S+Y+MGTADP+G L+ NEVC+ILD+GQ+SG VLVYRNPG HFGDVH+
Sbjct: 621 RTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQISGRVLVYRNPGLHFGDVHV 680
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
KA YV+E+ ++VGDAK+GIFFST+G
Sbjct: 681 MKARYVEELADVVGDAKYGIFFSTKG 706
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 201 bits (510), Expect = 2e-49
Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKAL 439
I IR SMVKVE D P DSLEI I + +KAYLS+ LI+LL+YGGV +F L
Sbjct: 499 IHIRPSMVKVEIDPTISSIPTFDSLEIVAISHRPNKAYLSKNLISLLSYGGVHKEYFMEL 558
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
ALE+ + A K+ + +DD+ RM+S+GIP+NEP L RL +
Sbjct: 559 LGSALEETKQVYLRKRAALKVAINYREMDDECLTARMISSGIPLNEPHLHARLSRLAKIE 618
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
+R GK+ + +S+Y+MGTADP+G L+ NEVC+ILD+GQVSG VLVYRNPG HFGDVH+
Sbjct: 619 RTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDNGQVSGRVLVYRNPGLHFGDVHV 678
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
KA YV+E+ ++VGDAK+GIFFST+G
Sbjct: 679 MKARYVEELADVVGDAKYGIFFSTKG 704
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 190 bits (483), Expect = 2e-46
Identities = 89/171 (52%), Positives = 126/171 (73%)
Frame = -2
Query: 513 KAYLSQTLIALLNYGGVPDSFFKALTWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVL 334
K LS+ LIALL++GGVPD +FK L W AL + D+ A ++ +DDD TV
Sbjct: 25 KTCLSRCLIALLSHGGVPDDYFKGLLWNALRESHGAFNDKRTAIRVAINRGSIDDDSTVA 84
Query: 333 RMLSAGIPVNEPFLQQRLREYLTNDIKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCII 154
RM+ +GIP+ EP+LQ RL + + K++R G++H+D+ +Y+MGTADP+G+L+ +EVCI+
Sbjct: 85 RMILSGIPLEEPYLQHRLFVLVKEERKSLRGGRLHVDDCFYLMGTADPTGKLEHDEVCIV 144
Query: 153 LDHGQVSGDVLVYRNPGRHFGDVHLYKATYVKEIEEIVGDAKFGIFFSTQG 1
L +GQVSG VLVYRNPG HFGD+H+ KATY++E+E VG+AK+ IFFS +G
Sbjct: 145 LANGQVSGKVLVYRNPGLHFGDIHVLKATYIEEMESFVGNAKYAIFFSKKG 195
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 190 bits (483), Expect = 2e-46
Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 1/204 (0%)
Frame = -2
Query: 609 IRSSMVKVERDENYVGSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTW 433
IR SM+KVE D + + +SLEI + K +LS+ LIALL+YGGVP+ FF +
Sbjct: 366 IRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVN 425
Query: 432 RALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIK 253
ALED ++ A ++ N G DD V M+ GIP+ EP+LQ RL + + K
Sbjct: 426 NALEDAHGILSNKNAALRVAL-NYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKK 484
Query: 252 NIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYK 73
+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQ+SG+VL+YRNPG HFGD+H+ K
Sbjct: 485 SLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILK 544
Query: 72 ATYVKEIEEIVGDAKFGIFFSTQG 1
ATYV+E+E+ VG+AK+ IFF +G
Sbjct: 545 ATYVRELEDFVGNAKYAIFFPCKG 568
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 190 bits (483), Expect = 2e-46
Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 1/204 (0%)
Frame = -2
Query: 609 IRSSMVKVERDENYVGSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKALTW 433
IR SM+KVE D + + +SLEI + K +LS+ LIALL+YGGVP+ FF +
Sbjct: 388 IRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKNLIALLSYGGVPEEFFMGIVN 447
Query: 432 RALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIK 253
ALED ++ A ++ N G DD V M+ GIP+ EP+LQ RL + + K
Sbjct: 448 NALEDAHGILSNKNAALRVAL-NYGDMDDNIVATMIGCGIPLEEPYLQCRLSILMKEEKK 506
Query: 252 NIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYK 73
+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQ+SG+VL+YRNPG HFGD+H+ K
Sbjct: 507 SLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQISGEVLIYRNPGLHFGDIHILK 566
Query: 72 ATYVKEIEEIVGDAKFGIFFSTQG 1
ATYV+E+E+ VG+AK+ IFF +G
Sbjct: 567 ATYVRELEDFVGNAKYAIFFPCKG 590
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 190 bits (482), Expect = 3e-46
Identities = 100/206 (48%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKAL 439
I IR SMVKVE D V+SLEI + + H+ + S+ LIALL +GGVP +F+ L
Sbjct: 284 IQIRPSMVKVETDPMISDDQTVNSLEIVTVSKSHRNTFFSRHLIALLCHGGVPKEYFREL 343
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
+ LED A+K+ + +DDDY ++M+ +GIP+ E +LQ RL +
Sbjct: 344 LMKDLEDTRGVFCSRRAAFKVAYNHGEIDDDYNSVKMILSGIPLEESYLQYRLSILKKEE 403
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
K+++KGK+ SY +MGTADP+G L+ +EVCIILD GQ+SG VLVYR+PG HFGD+HL
Sbjct: 404 NKSLQKGKICSPQSYMLMGTADPTGILERDEVCIILDSGQMSGQVLVYRHPGLHFGDIHL 463
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
KA YVKE+E +VG+AK+ IFFS +G
Sbjct: 464 LKARYVKELEYVVGNAKYAIFFSCKG 489
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 188 bits (477), Expect = 1e-45
Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 1/204 (0%)
Frame = -2
Query: 609 IRSSMVKVERDENYVGSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKALTW 433
+R SM+KVE D + + +SLEI + K +LS+ LIALL+YGGVP+ FF +
Sbjct: 366 VRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILN 425
Query: 432 RALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIK 253
ALED +KA + N G DD V M+ GIP+ EP+LQ L + K
Sbjct: 426 NALEDAH-GILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKK 484
Query: 252 NIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYK 73
+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQVSG+VLVYRNPG HFGD+H+ K
Sbjct: 485 SLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILK 544
Query: 72 ATYVKEIEEIVGDAKFGIFFSTQG 1
ATYV+E+E+ VG+AK+ IFF +G
Sbjct: 545 ATYVRELEDFVGNAKYAIFFPCKG 568
>ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 188 bits (477), Expect = 1e-45
Identities = 100/204 (49%), Positives = 135/204 (66%), Gaps = 1/204 (0%)
Frame = -2
Query: 609 IRSSMVKVERDENYVGSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKALTW 433
+R SM+KVE D + + +SLEI + K +LS+ LIALL+YGGVP+ FF +
Sbjct: 170 VRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILN 229
Query: 432 RALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTNDIK 253
ALED +KA + N G DD V M+ GIP+ EP+LQ L + K
Sbjct: 230 NALEDAH-GILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKK 288
Query: 252 NIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLYK 73
+++ GK+ + SYY+MGTADP+G L+ +EVCIILD GQVSG+VLVYRNPG HFGD+H+ K
Sbjct: 289 SLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILK 348
Query: 72 ATYVKEIEEIVGDAKFGIFFSTQG 1
ATYV+E+E+ VG+AK+ IFF +G
Sbjct: 349 ATYVRELEDFVGNAKYAIFFPCKG 372
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 187 bits (474), Expect = 3e-45
Identities = 100/207 (48%), Positives = 136/207 (65%), Gaps = 2/207 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKAL 439
I IR SM+KV+ D + +SLE+ Q K YLS+ LIALL+YGGVP+ FF +
Sbjct: 498 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 557
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
AL+D ++ A K+ G+D D+T RM+ +GI ++EP+LQ RL + +
Sbjct: 558 LRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE 617
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD-VLVYRNPGRHFGDVH 82
K+++ GK+ + SYY+MGT DP+G LK NEVCIIL GQVS + VLVYRNPG HFGD+H
Sbjct: 618 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIH 677
Query: 81 LYKATYVKEIEEIVGDAKFGIFFSTQG 1
+ KATYVKE+E+ VG +K+ IFF G
Sbjct: 678 VLKATYVKELEDFVGTSKYAIFFPCNG 704
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 187 bits (474), Expect = 3e-45
Identities = 100/207 (48%), Positives = 136/207 (65%), Gaps = 2/207 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKAL 439
I IR SM+KV+ D + +SLE+ Q K YLS+ LIALL+YGGVP+ FF +
Sbjct: 500 IQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRNLIALLSYGGVPEIFFLDI 559
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
AL+D ++ A K+ G+D D+T RM+ +GI ++EP+LQ RL + +
Sbjct: 560 LRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGISLDEPYLQHRLSILMKEE 619
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGD-VLVYRNPGRHFGDVH 82
K+++ GK+ + SYY+MGT DP+G LK NEVCIIL GQVS + VLVYRNPG HFGD+H
Sbjct: 620 KKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILKDGQVSWEKVLVYRNPGLHFGDIH 679
Query: 81 LYKATYVKEIEEIVGDAKFGIFFSTQG 1
+ KATYVKE+E+ VG +K+ IFF G
Sbjct: 680 VLKATYVKELEDFVGTSKYAIFFPCNG 706
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 185 bits (469), Expect = 1e-44
Identities = 99/206 (48%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKAL 439
I IR SM+KVE D + V+S+EI Q ++YLS+ LIALL+YGGVP+ +F L
Sbjct: 417 IQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNL 476
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
ALED + ++A + G DD V RM+ +GIP++EPFL L + +
Sbjct: 477 LKDALEDAP-SVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEE 535
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
K +R GK+ +++ +Y+MGTADP+G LK +EVCIILDHGQV G VLVY++PG HFGD+H+
Sbjct: 536 RKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHV 595
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
ATYV+ +EE VG+AK+ IFF +G
Sbjct: 596 LNATYVEALEEFVGNAKYAIFFPIKG 621
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 185 bits (469), Expect = 1e-44
Identities = 99/206 (48%), Positives = 137/206 (66%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIG-QKHKAYLSQTLIALLNYGGVPDSFFKAL 439
I IR SM+KVE D + V+S+EI Q ++YLS+ LIALL+YGGVP+ +F L
Sbjct: 431 IQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNL 490
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
ALED + ++A + G DD V RM+ +GIP++EPFL L + +
Sbjct: 491 LKDALEDAP-SVQSSKRAALRVSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEE 549
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
K +R GK+ +++ +Y+MGTADP+G LK +EVCIILDHGQV G VLVY++PG HFGD+H+
Sbjct: 550 RKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHV 609
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
ATYV+ +EE VG+AK+ IFF +G
Sbjct: 610 LNATYVEALEEFVGNAKYAIFFPIKG 635
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 182 bits (461), Expect = 8e-44
Identities = 96/206 (46%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKAL 439
+ +R SM+KV D +SLE+ KA LS+ L+ALL+YGGVP+ FF +
Sbjct: 479 VQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNI 538
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
LE+ E A+K N G DD YT M+ GIP++EP+L+ RL L +
Sbjct: 539 LRNTLEESKTIFYSERAAFKAAI-NYG-DDQYTA-DMILVGIPLDEPYLKDRLSYLLKTE 595
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
++ G+ +D SYY+MGT DP+G LK NE+C+IL GQ+SGDVLVYRNPG HFGD+H+
Sbjct: 596 RNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHV 655
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
KATYVK +E+ VG+AKF +FF +G
Sbjct: 656 LKATYVKALEDYVGNAKFAVFFPQKG 681
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 182 bits (461), Expect = 8e-44
Identities = 96/206 (46%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQK-HKAYLSQTLIALLNYGGVPDSFFKAL 439
+ +R SM+KV D +SLE+ KA LS+ L+ALL+YGGVP+ FF +
Sbjct: 453 VQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNI 512
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
LE+ E A+K N G DD YT M+ GIP++EP+L+ RL L +
Sbjct: 513 LRNTLEESKTIFYSERAAFKAAI-NYG-DDQYTA-DMILVGIPLDEPYLKDRLSYLLKTE 569
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
++ G+ +D SYY+MGT DP+G LK NE+C+IL GQ+SGDVLVYRNPG HFGD+H+
Sbjct: 570 RNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQISGDVLVYRNPGLHFGDIHV 629
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
KATYVK +E+ VG+AKF +FF +G
Sbjct: 630 LKATYVKALEDYVGNAKFAVFFPQKG 655
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 180 bits (457), Expect = 2e-43
Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKAL 439
I +R SM+KVE+D + V +++SLE+ K K YLS+ LIALL++GGVP+ FF L
Sbjct: 475 IQVRPSMIKVEKDPS-VHMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMDL 533
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
+ED + ++ A + N G D+Y M+ GIP++EPFL+ L + +
Sbjct: 534 LRSNMEDANHVYSNKRSALRA-SINCGEKDEYNAAEMILCGIPLDEPFLKHHLSRFAREE 592
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
K +R GK+++ + +Y+MGT DP+G LK N+VCII ++ Q+ GDVLVYRNPG HFGD+H
Sbjct: 593 KKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDVLVYRNPGLHFGDIHK 652
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
ATYVKE+E VG +K+GIFF G
Sbjct: 653 MDATYVKELESYVGHSKYGIFFPRVG 678
>ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1068
Score = 180 bits (457), Expect = 2e-43
Identities = 96/205 (46%), Positives = 137/205 (66%), Gaps = 2/205 (0%)
Frame = -2
Query: 609 IRSSMVKVERDENYVGSPAVDSLEI-CNIGQKHKAYLSQTLIALLNYGGVPDSFFKALTW 433
IR SM+KVE+D + + ++SLEI C KAYLS+T+IALL YGGVP F +
Sbjct: 548 IRPSMIKVEKDPKFSDTNTINSLEIVCTSAPPMKAYLSRTIIALLVYGGVPKDLFMKILE 607
Query: 432 RALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLT-NDI 256
A+ED A K+ ++ G+DD + V M+ GIP+ E +LQ RL L +
Sbjct: 608 NAVEDAHHVISKTRAALKVAEKYGGIDD-FLVETMIRLGIPIEESYLQYRLSCLLRLQEG 666
Query: 255 KNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHLY 76
+RKG++ + +++ +MGTADP+G L+ +EVC+IL GQ+SG VLVYR+PG+HFGD+ +
Sbjct: 667 TGLRKGRLPIPDTFMLMGTADPTGTLERDEVCVILKDGQLSGTVLVYRHPGQHFGDIKVL 726
Query: 75 KATYVKEIEEIVGDAKFGIFFSTQG 1
KATYVKE+E +VGDA++ IFFS +G
Sbjct: 727 KATYVKELESVVGDARYAIFFSCKG 751
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 175 bits (443), Expect = 1e-41
Identities = 93/206 (45%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKAL 439
I IR SM+KVE D + +SLEI K + YLS+TLIALL YGGVP +F +
Sbjct: 584 IQIRPSMIKVEADPRLSRAQMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPVEYFYDI 643
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
LE+ DE A K+ ++ DD T M+ AG+P+ EP+L L +
Sbjct: 644 LNNTLEETQRLYSDEVTALKVAVNHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEE 703
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
++ G++ + +++Y+MGTADP+ L P+EVC+IL+HGQ+ G+VLVYRNPG HFGD+H
Sbjct: 704 RNGLKGGRLPIADTFYLMGTADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHR 763
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
A VK + +IVG+AK+GIFFST+G
Sbjct: 764 LLAVPVKNLGDIVGNAKYGIFFSTKG 789
>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
gi|482565607|gb|EOA29796.1| hypothetical protein
CARUB_v10012890mg [Capsella rubella]
Length = 998
Score = 175 bits (443), Expect = 1e-41
Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKAL 439
+ +R SM+KV D+ + +SLE+ N K LS+ LIALL+YGGVP+ FF +
Sbjct: 483 VQVRPSMIKVYEDQALLNFSTFNSLEVVNTSNPPKMTRLSRNLIALLSYGGVPNDFFLNI 542
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
+ LE+ E A K N G DD M+ IP++EP L+ RL L +
Sbjct: 543 LRKTLEESKTIFYSERAAIKAAI-NYGDMDDQNTAEMILVDIPLDEPHLKDRLSILLKTE 601
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
+++G++ + SYY+MGT DP+G LK NEVC+IL+ GQ+SG+VLVYRNPG HFGD+H+
Sbjct: 602 KNALKEGRLPIGESYYLMGTVDPTGELKENEVCVILETGQISGNVLVYRNPGLHFGDIHV 661
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
KATYVK +E+ VG++K+ +FF +G
Sbjct: 662 LKATYVKALEDYVGNSKYAVFFPQKG 687
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 175 bits (443), Expect = 1e-41
Identities = 92/206 (44%), Positives = 134/206 (65%), Gaps = 1/206 (0%)
Frame = -2
Query: 615 IVIRSSMVKVERDENYVGSPAVDSLEICNIGQKHK-AYLSQTLIALLNYGGVPDSFFKAL 439
I IR SM+KVE D + +SLE+ K +LS+ LIALLNYGGVP +F +
Sbjct: 545 IQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTFLSRNLIALLNYGGVPREYFMNI 604
Query: 438 TWRALEDLSIKCRDEEKAWKLLKQNQGLDDDYTVLRMLSAGIPVNEPFLQQRLREYLTND 259
AL+D+ + A ++ N G DD+ V RM+ AGIP++E +LQ RL L +
Sbjct: 605 LVDALKDVQGVFSSKRAALRV-SINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEE 663
Query: 258 IKNIRKGKVHLDNSYYVMGTADPSGRLKPNEVCIILDHGQVSGDVLVYRNPGRHFGDVHL 79
K+++ G++H+ YY+MGT DP+ L+ EVC+IL +GQ++G VLVYRNPG HFGD+H+
Sbjct: 664 KKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGDIHV 723
Query: 78 YKATYVKEIEEIVGDAKFGIFFSTQG 1
A YV+++ +VG+AK+ IFFS++G
Sbjct: 724 LTAKYVEKLVPVVGNAKYAIFFSSKG 749