BLASTX nr result

ID: Ephedra28_contig00020900 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00020900
         (647 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Rici...    88   2e-15
gb|ABR17073.1| unknown [Picea sitchensis]                              86   7e-15
ref|XP_004296864.1| PREDICTED: RING-H2 finger protein ATL2-like ...    86   1e-14
dbj|BAK03766.1| predicted protein [Hordeum vulgare subsp. vulgare]     84   3e-14
gb|ACN40904.1| unknown [Picea sitchensis]                              84   3e-14
gb|AFK35896.1| unknown [Lotus japonicus]                               84   4e-14
emb|CBI17870.3| unnamed protein product [Vitis vinifera]               84   4e-14
ref|XP_002267344.1| PREDICTED: RING-H2 finger protein ATL43-like...    84   4e-14
ref|NP_001066681.1| Os12g0432600 [Oryza sativa Japonica Group] g...    84   5e-14
gb|ABK26617.1| unknown [Picea sitchensis]                              84   5e-14
gb|AFW70296.1| putative RING zinc finger domain superfamily prot...    83   6e-14
ref|XP_006494326.1| PREDICTED: E3 ubiquitin-protein ligase ATL42...    83   8e-14
ref|XP_006451246.1| hypothetical protein CICLE_v10010254mg [Citr...    83   8e-14
ref|XP_002315508.2| hypothetical protein POPTR_0010s01400g [Popu...    82   1e-13
ref|XP_006298704.1| hypothetical protein CARUB_v10014799mg [Caps...    82   1e-13
ref|XP_006357148.1| PREDICTED: RING-H2 finger protein ATL3-like ...    82   1e-13
ref|XP_002304259.2| hypothetical protein POPTR_0003s07090g [Popu...    82   1e-13
ref|XP_006298197.1| hypothetical protein CARUB_v10014245mg [Caps...    82   1e-13
ref|XP_006474307.1| PREDICTED: RING-H2 finger protein ATL43-like...    82   2e-13
ref|XP_006453207.1| hypothetical protein CICLE_v10010271mg, part...    82   2e-13

>ref|XP_002533814.1| RING-H2 finger protein ATL1M, putative [Ricinus communis]
           gi|223526251|gb|EEF28567.1| RING-H2 finger protein
           ATL1M, putative [Ricinus communis]
          Length = 281

 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 48/124 (38%), Positives = 64/124 (51%), Gaps = 21/124 (16%)
 Frame = -1

Query: 326 VLLMGLAIVVALSL---WYFWN------------------HLPSSTKRVRGLSHSDLKGL 210
           +L M +  V+ L L   W++W                     P+     RGL  S L+ L
Sbjct: 23  ILFMVVVFVLLLHLYAKWFWWRIEEPTSPPHSRRNRRRFVFTPAQDPVRRGLDMSVLRSL 82

Query: 209 STMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRRHSTCPLCRC 30
             ++FQS +D +D  ECAVCL   + G+  RL+P C+H FHV C D W + HSTCPLCR 
Sbjct: 83  PVVIFQS-EDFKDGLECAVCLSEIAQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRN 141

Query: 29  SVVP 18
           SV P
Sbjct: 142 SVAP 145


>gb|ABR17073.1| unknown [Picea sitchensis]
          Length = 187

 Score = 86.3 bits (212), Expect = 7e-15
 Identities = 52/130 (40%), Positives = 68/130 (52%), Gaps = 19/130 (14%)
 Frame = -1

Query: 359 MAAQISQFLSWVLLMGLAIVVALSLWYFWNHLPSSTKRVR--------------GLSHSD 222
           +AA +S  L   L   + ++V   LW  W      + R R              GLS +D
Sbjct: 7   LAAMMSLLL---LCAAIGVMVLAYLWLVWYVSLHQSLRQRPLEDNGNGKPPKQQGLSEAD 63

Query: 221 LKGLSTMVFQSHKDEEDPE-----ECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRR 57
           L+ L T+  +  K+EE  E     ECAVCL +F  GD CR++P+CSH FHV CAD WL +
Sbjct: 64  LQRLPTI--ECCKEEEGDERTGNAECAVCLEAFQSGDRCRVIPVCSHAFHVQCADAWLSK 121

Query: 56  HSTCPLCRCS 27
            S CPLCR S
Sbjct: 122 RSVCPLCRRS 131


>ref|XP_004296864.1| PREDICTED: RING-H2 finger protein ATL2-like [Fragaria vesca subsp.
           vesca]
          Length = 288

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 37/75 (49%), Positives = 43/75 (57%)
 Frame = -1

Query: 242 RGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWL 63
           RGL  S LK L   V+ S    E   ECAVCL  F   +  R++P C H FH+ C D W 
Sbjct: 92  RGLDESVLKSLPVFVYDSKTHPEAVLECAVCLSEFEENETGRVLPKCKHSFHIECIDMWF 151

Query: 62  RRHSTCPLCRCSVVP 18
             HSTCPLCRC+V P
Sbjct: 152 HSHSTCPLCRCAVEP 166


>dbj|BAK03766.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 404

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
 Frame = -1

Query: 254 TKRVRGLSHSDLKGLSTMVF---QSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHV 84
           ++R+RGL  + L+ L TM +   ++HK  +   ECAVCL  F   D  RL+P CSH FH 
Sbjct: 105 SRRMRGLDPAALEALPTMAYADVKAHKVGKGELECAVCLSEFDDDDTLRLLPKCSHAFHA 164

Query: 83  SCADQWLRRHSTCPLCRCSVVP 18
            C D WL  H TCP+CR ++VP
Sbjct: 165 DCIDAWLASHVTCPVCRANLVP 186


>gb|ACN40904.1| unknown [Picea sitchensis]
          Length = 218

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
 Frame = -1

Query: 326 VLLMGLAIVVALSLWYFW----NHLP--------SSTKRVRGLSHSDLKGLSTMVFQSHK 183
           +L  G+ + VA+ LW  W    N+ P            + +GLS +DL+ L T+  Q  +
Sbjct: 48  LLCAGMGMGVAVYLWLVWYVSLNNRPRQRASEDNGKPHKHQGLSEADLQRLPTIECQEEE 107

Query: 182 DEEDP-----EECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRRHSTCPLCRCS 27
                      ECAVCL  F  GD CR++P CSH FHV CAD WL + S CP+CR S
Sbjct: 108 SHAGDGGGGDAECAVCLEVFQSGDRCRVIPACSHAFHVHCADAWLSKRSVCPICRRS 164


>gb|AFK35896.1| unknown [Lotus japonicus]
          Length = 286

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 42/80 (52%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
 Frame = -1

Query: 260 SSTKRVR-GLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHV 84
           S  +R R GL  S L+ L  +VFQS +D +D  ECAVCL     G+  RL+P C+H FHV
Sbjct: 66  SEPRRPRTGLDPSVLRSLPVVVFQS-QDFKDGLECAVCLSELDEGEKARLLPKCNHGFHV 124

Query: 83  SCADQWLRRHSTCPLCRCSV 24
            C D W + HSTCPLCR SV
Sbjct: 125 DCIDMWFQSHSTCPLCRTSV 144


>emb|CBI17870.3| unnamed protein product [Vitis vinifera]
          Length = 457

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -1

Query: 266 LPSSTKRVRGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFH 87
           L S+ ++  G+  + ++ L    F S + ++D  ECAVCL  F P ++ RL+P C H FH
Sbjct: 94  LSSAARKNSGIDRTVIESLPVFRFASLRGQKDGLECAVCLNRFEPTEILRLLPKCKHAFH 153

Query: 86  VSCADQWLRRHSTCPLCRCSVVP 18
           V C D WL  HSTCPLCR  V P
Sbjct: 154 VECVDTWLDAHSTCPLCRYRVDP 176


>ref|XP_002267344.1| PREDICTED: RING-H2 finger protein ATL43-like [Vitis vinifera]
          Length = 404

 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -1

Query: 266 LPSSTKRVRGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFH 87
           L S+ ++  G+  + ++ L    F S + ++D  ECAVCL  F P ++ RL+P C H FH
Sbjct: 94  LSSAARKNSGIDRTVIESLPVFRFASLRGQKDGLECAVCLNRFEPTEILRLLPKCKHAFH 153

Query: 86  VSCADQWLRRHSTCPLCRCSVVP 18
           V C D WL  HSTCPLCR  V P
Sbjct: 154 VECVDTWLDAHSTCPLCRYRVDP 176


>ref|NP_001066681.1| Os12g0432600 [Oryza sativa Japonica Group]
           gi|77554889|gb|ABA97685.1| Zinc finger, C3HC4 type
           family protein, expressed [Oryza sativa Japonica Group]
           gi|113649188|dbj|BAF29700.1| Os12g0432600 [Oryza sativa
           Japonica Group] gi|215766317|dbj|BAG98545.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 185

 Score = 83.6 bits (205), Expect = 5e-14
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
 Frame = -1

Query: 308 AIVVALSLWYFW--------------NHLPSSTKRVRGLSHSDLKGLSTMVFQSHKDEED 171
           A+++A + W+ W              +H P++    RGLS  D++ +    ++       
Sbjct: 60  AVLLAAAGWFTWYYFGAAPAPPVLPDHHQPAAPVEARGLSQEDIEAIPAFEYRRGSSGSG 119

Query: 170 PEECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRRHSTCPLCRCSVV 21
             +CAVC+ +   GD  R +P C H FH  C D WLR H+TCP+CR  VV
Sbjct: 120 VAQCAVCIAAVKDGDTVRRLPACGHAFHAPCVDGWLRDHATCPMCRADVV 169


>gb|ABK26617.1| unknown [Picea sitchensis]
          Length = 186

 Score = 83.6 bits (205), Expect = 5e-14
 Identities = 52/129 (40%), Positives = 69/129 (53%), Gaps = 26/129 (20%)
 Frame = -1

Query: 335 LSWVLLM-GLAIVVALSLWYFW----------NHLPSS----TKRVRGLSHSDLKGLSTM 201
           LS++LL  G+  VV + LW  W             PS      ++ +GLS +DL+ L T+
Sbjct: 10  LSFLLLCAGIGGVVLVYLWLIWYVSLHEMSNRGRRPSEGNGKAQKQQGLSAADLQRLPTI 69

Query: 200 VFQSHKDEEDPE-----------ECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRRH 54
             +  K+EE  E           ECAVCL  F  GD CR++P+CSH FHV CAD WL + 
Sbjct: 70  --ECGKEEEGEERSSGSRGGGNAECAVCLEIFQNGDRCRVIPVCSHAFHVQCADAWLSKC 127

Query: 53  STCPLCRCS 27
           S CP+CR S
Sbjct: 128 SVCPICRRS 136


>gb|AFW70296.1| putative RING zinc finger domain superfamily protein [Zea mays]
          Length = 247

 Score = 83.2 bits (204), Expect = 6e-14
 Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
 Frame = -1

Query: 335 LSWVLLMGLAIVVALSLWYFWNHLPS---------STKRVRGLSHSDLKGLSTMVFQSHK 183
           +S+  L+ + +V+    WY      S           KR +GL    +  L   V+Q  K
Sbjct: 82  ISFGSLLAILLVMCAIRWYLVRRSASRDATAAAELEKKRSKGLGADAIAALPEFVYQKEK 141

Query: 182 DEEDPEE-------CAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRRHSTCPLCRCSV 24
           D  D EE       CAVCLG+   GD    +P C H FH  C D WLR HSTCP+CR  V
Sbjct: 142 DANDGEEEEERELECAVCLGAMVHGDAALRLPPCMHVFHRGCVDVWLREHSTCPVCRAEV 201

Query: 23  V 21
           V
Sbjct: 202 V 202


>ref|XP_006494326.1| PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Citrus sinensis]
          Length = 428

 Score = 82.8 bits (203), Expect = 8e-14
 Identities = 36/78 (46%), Positives = 47/78 (60%)
 Frame = -1

Query: 257 STKRVRGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSC 78
           ST R  G+  + ++ L    F S K  +   ECAVCL  F   ++ RL+P C H FH+SC
Sbjct: 84  STSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISC 143

Query: 77  ADQWLRRHSTCPLCRCSV 24
            DQWL +HS+CPLCR  V
Sbjct: 144 IDQWLEKHSSCPLCRLKV 161


>ref|XP_006451246.1| hypothetical protein CICLE_v10010254mg [Citrus clementina]
           gi|557554472|gb|ESR64486.1| hypothetical protein
           CICLE_v10010254mg [Citrus clementina]
          Length = 415

 Score = 82.8 bits (203), Expect = 8e-14
 Identities = 36/78 (46%), Positives = 47/78 (60%)
 Frame = -1

Query: 257 STKRVRGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSC 78
           ST R  G+  + ++ L    F S K  +   ECAVCL  F   ++ RL+P C H FH+SC
Sbjct: 71  STSRFSGIDKAVIESLPFFRFSSLKGSKQGLECAVCLSKFEDTEILRLLPKCKHAFHISC 130

Query: 77  ADQWLRRHSTCPLCRCSV 24
            DQWL +HS+CPLCR  V
Sbjct: 131 IDQWLEKHSSCPLCRLKV 148


>ref|XP_002315508.2| hypothetical protein POPTR_0010s01400g [Populus trichocarpa]
           gi|550328861|gb|EEF01679.2| hypothetical protein
           POPTR_0010s01400g [Populus trichocarpa]
          Length = 291

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 37/81 (45%), Positives = 47/81 (58%)
 Frame = -1

Query: 257 STKRVRGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSC 78
           +T+  RGL  + LK L   V+ S K  +D  ECAVCL  F   +  R +P C+H FH+ C
Sbjct: 80  TTQVTRGLEETVLKSLPVFVY-SEKTHQDSMECAVCLSEFQENETGRTLPKCNHSFHIGC 138

Query: 77  ADQWLRRHSTCPLCRCSVVPL 15
            D W   HSTCPLCR  V P+
Sbjct: 139 IDMWFHSHSTCPLCRSPVEPV 159


>ref|XP_006298704.1| hypothetical protein CARUB_v10014799mg [Capsella rubella]
           gi|482567413|gb|EOA31602.1| hypothetical protein
           CARUB_v10014799mg [Capsella rubella]
          Length = 163

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 30/72 (41%), Positives = 48/72 (66%)
 Frame = -1

Query: 239 GLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLR 60
           GL  + ++ L  ++F+    +E+ EEC +CLG F  GD  +++P CSH +H  C D+WL+
Sbjct: 81  GLDPATIRSLPVVLFRREAADEEEEECCICLGGFEEGDKMKVLPPCSHCYHCECVDRWLK 140

Query: 59  RHSTCPLCRCSV 24
           + S+CPLCR S+
Sbjct: 141 KESSCPLCRVSI 152


>ref|XP_006357148.1| PREDICTED: RING-H2 finger protein ATL3-like [Solanum tuberosum]
          Length = 236

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 35/75 (46%), Positives = 46/75 (61%)
 Frame = -1

Query: 236 LSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWLRR 57
           +SH D++ L +  FQS      P ECAVCL +   G+ CRL+PLC+H FH  C D WL +
Sbjct: 49  MSHEDIEKLPSYAFQSKDKGTSPIECAVCLDNLKVGEKCRLLPLCNHSFHAECIDLWLLK 108

Query: 56  HSTCPLCRCSVVPLK 12
            S CP+CR +   LK
Sbjct: 109 TSICPMCRATADFLK 123


>ref|XP_002304259.2| hypothetical protein POPTR_0003s07090g [Populus trichocarpa]
           gi|550342602|gb|EEE79238.2| hypothetical protein
           POPTR_0003s07090g [Populus trichocarpa]
          Length = 277

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 39/75 (52%), Positives = 46/75 (61%)
 Frame = -1

Query: 242 RGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVSCADQWL 63
           RGL  S  + L  ++FQS KD  D  ECAVCL     G+  RL+P C+H FH  C D W 
Sbjct: 73  RGLDLSIRRSLPVVIFQS-KDFPDGLECAVCLSDVVEGEKARLLPKCNHGFHHDCIDMWF 131

Query: 62  RRHSTCPLCRCSVVP 18
           + HSTCPLCR SV P
Sbjct: 132 QSHSTCPLCRSSVAP 146


>ref|XP_006298197.1| hypothetical protein CARUB_v10014245mg [Capsella rubella]
           gi|482566906|gb|EOA31095.1| hypothetical protein
           CARUB_v10014245mg [Capsella rubella]
          Length = 306

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 39/82 (47%), Positives = 46/82 (56%)
 Frame = -1

Query: 260 SSTKRVRGLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFHVS 81
           SS    RGL  + +K L    F S +  +DP ECAVCL  F   +  R++P C H FHV 
Sbjct: 88  SSVVASRGLDPNVIKSLPVFTF-SDETHKDPIECAVCLSEFEESESGRVLPNCKHTFHVD 146

Query: 80  CADQWLRRHSTCPLCRCSVVPL 15
           C D W   HSTCPLCR  V PL
Sbjct: 147 CIDMWFHSHSTCPLCRALVEPL 168


>ref|XP_006474307.1| PREDICTED: RING-H2 finger protein ATL43-like [Citrus sinensis]
          Length = 445

 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = -1

Query: 263 PSSTKRVR-GLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFH 87
           PSST R   G+  + ++ L    F + +  +D  ECAVCL  F P ++ RL+P C H FH
Sbjct: 108 PSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFH 167

Query: 86  VSCADQWLRRHSTCPLCRCSVVP 18
           V C D WL  HSTCPLCR  V P
Sbjct: 168 VECVDTWLDSHSTCPLCRYRVDP 190


>ref|XP_006453207.1| hypothetical protein CICLE_v10010271mg, partial [Citrus clementina]
           gi|557556433|gb|ESR66447.1| hypothetical protein
           CICLE_v10010271mg, partial [Citrus clementina]
          Length = 499

 Score = 81.6 bits (200), Expect = 2e-13
 Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
 Frame = -1

Query: 263 PSSTKRVR-GLSHSDLKGLSTMVFQSHKDEEDPEECAVCLGSFSPGDMCRLMPLCSHYFH 87
           PSST R   G+  + ++ L    F + +  +D  ECAVCL  F P ++ RL+P C H FH
Sbjct: 187 PSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFH 246

Query: 86  VSCADQWLRRHSTCPLCRCSVVP 18
           V C D WL  HSTCPLCR  V P
Sbjct: 247 VECVDTWLDSHSTCPLCRYRVDP 269


Top