BLASTX nr result
ID: Ephedra28_contig00020864
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00020864
(701 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG22123.1| polyprotein [Prunus avium] 147 3e-33
gb|ABG22121.1| polyprotein [Solanum melongena] 132 1e-28
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 119 9e-25
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 110 3e-22
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 104 2e-20
emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera] 101 2e-19
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 100 6e-19
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera] 100 6e-19
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 100 6e-19
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 99 1e-18
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 99 1e-18
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 99 1e-18
gb|AFB73911.1| polyprotein [Citrus sinensis] 99 1e-18
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 99 1e-18
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 98 2e-18
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 98 2e-18
gb|ABG22119.1| polyprotein [Cynara cardunculus var. scolymus] 98 2e-18
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 97 4e-18
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 97 4e-18
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 97 5e-18
>gb|ABG22123.1| polyprotein [Prunus avium]
Length = 276
Score = 147 bits (371), Expect = 3e-33
Identities = 75/114 (65%), Positives = 86/114 (75%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAMVCTRPD QAVSI+ RYMHNPGKGH QA+K IL ILGT+D+GLLFQ+D G
Sbjct: 111 SLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQ 170
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
++G V+SDYAG+LD RST FVFT+ G V WRS LQ T L TE EYMA+
Sbjct: 171 CVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSWRSILQSTVALSTTEAEYMAV 224
>gb|ABG22121.1| polyprotein [Solanum melongena]
Length = 361
Score = 132 bits (332), Expect = 1e-28
Identities = 67/114 (58%), Positives = 84/114 (73%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAMVCTR D QAVS++ RYMH+PGKGH QA+K IL I T+DIGL+F++D ++G
Sbjct: 196 SLMYAMVCTRSDISQAVSVVSRYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGS 255
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
++G +SDYAG+LD RST ++FTL V W+STLQ T L TE EYMAI
Sbjct: 256 CVVGYCDSDYAGDLDKRRSTTGYLFTLAKGPVSWKSTLQATVALSTTEAEYMAI 309
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 119 bits (298), Expect = 9e-25
Identities = 63/116 (54%), Positives = 81/116 (69%)
Frame = -2
Query: 352 IMHSLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYA 173
++ SL+YAMVCTRPD QAVS++ RYMHNPGK A+K IL + GT+D+GLLF+++
Sbjct: 81 VVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKWILRYLYGTVDVGLLFKKN-- 138
Query: 172 IG*SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMA 5
G +G +SD+AG+LD RST +VFTL G V WRS LQ T L TE EY+A
Sbjct: 139 CGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSILQSTIALSTTEAEYIA 194
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 110 bits (276), Expect = 3e-22
Identities = 58/114 (50%), Positives = 76/114 (66%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAMVCTRPD AVS++ R+M PG+ H QA+K I + GT D+GL++ D
Sbjct: 1098 SLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQC-- 1155
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G +SDYAG++D RS +VFTL G +V W++TLQPT L TE EYMA+
Sbjct: 1156 LVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMAL 1209
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 104 bits (260), Expect = 2e-20
Identities = 54/113 (47%), Positives = 74/113 (65%)
Frame = -2
Query: 340 LMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG*S 161
LMYAM+CTRPD QA+S++ +YM NPGK H +A+K I + T +G++F+R
Sbjct: 1090 LMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEA-C 1148
Query: 160 IIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G V+SD+AG+LD RST +VFT G V W++TLQ L TE EYMA+
Sbjct: 1149 VAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMAL 1201
>emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]
Length = 734
Score = 101 bits (252), Expect = 2e-19
Identities = 50/114 (43%), Positives = 75/114 (65%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
S+MY MVCTR + AVS++ RYM +P K H QA+K IL ++ GT +GL++ +++ I
Sbjct: 593 SIMYVMVCTRLEKSHAVSVVSRYMDHPEKIHWQAVKWILRHLRGTSHVGLVYDKNFDISR 652
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
I+G V+ DY G+LD RS +VFTL G+++ W++TLQ T L E + M +
Sbjct: 653 GIVGYVDFDYVGDLDRRRSLTRYVFTLCGNVISWKATLQSTIALSTIEAKCMIV 706
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 100 bits (248), Expect = 6e-19
Identities = 55/117 (47%), Positives = 74/117 (63%)
Frame = -2
Query: 352 IMHSLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYA 173
++ SLMYAMVC+RPD A+S++ RYM NPGK H +A++ I + GT L F R
Sbjct: 925 VVGSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQFGRSRD 984
Query: 172 IG*SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
++G V+SD+AG+LD RS +VFT+ G V W++ LQ T L TE EYMAI
Sbjct: 985 ---GLVGYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANLQATVALSTTEAEYMAI 1038
>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
Length = 406
Score = 100 bits (248), Expect = 6e-19
Identities = 53/113 (46%), Positives = 74/113 (65%)
Frame = -2
Query: 340 LMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG*S 161
LMYAMVCTR D AVS++ +++ NPG+ + A+K I + GT D G+ F + + S
Sbjct: 199 LMYAMVCTRLDLAHAVSVVSKFLSNPGRMNWDAVKWIFRYLRGTTDYGITFSKQQSDP-S 257
Query: 160 IIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G V++DYAG+LD RSTI +VFTL G +CW+S +Q L T+ EYMAI
Sbjct: 258 VKGYVDADYAGDLDERRSTIGYVFTLGGGPICWKSMIQSLVALYTTKSEYMAI 310
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 100 bits (248), Expect = 6e-19
Identities = 55/114 (48%), Positives = 73/114 (64%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAMVC RPD A+S++ RYM NPGK H +A++ I + GT L F+R
Sbjct: 1094 SLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAVQWIFRYLRGTSSACLQFERSRD--- 1150
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
++G V+SD+AG+LD RS +VFT+ G V W+++LQ T L TE EYMAI
Sbjct: 1151 GLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWKASLQATVALSTTEAEYMAI 1204
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 99.4 bits (246), Expect = 1e-18
Identities = 55/114 (48%), Positives = 73/114 (64%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAMVC+RPD A+S++ RYM NPGK H +A++ I + GT L F R
Sbjct: 1329 SLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRD--- 1385
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
++G V+SD+AG+LD RS +VFT+ G V W+++LQ T L TE EYMAI
Sbjct: 1386 GLVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAI 1439
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 99.4 bits (246), Expect = 1e-18
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = -2
Query: 352 IMHSLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLF-QRDY 176
++ SLMYAMVCTRPD AVS++ R+M NPGK H +A+K I+ + G+ + L++ D
Sbjct: 1182 VVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDV 1241
Query: 175 AIG*SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G ++G +SD+ G+L RS ++FTL G + WR++LQPT L TE EYM++
Sbjct: 1242 SSG--LVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSL 1297
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 99.4 bits (246), Expect = 1e-18
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Frame = -2
Query: 352 IMHSLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLF-QRDY 176
++ SLMYAMVCTRPD AVS++ R+M NPGK H +A+K I+ + G+ + L++ D
Sbjct: 1419 VVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDV 1478
Query: 175 AIG*SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G ++G +SD+ G+L RS ++FTL G + WR++LQPT L TE EYM++
Sbjct: 1479 SSG--LVGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSL 1534
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 99.0 bits (245), Expect = 1e-18
Identities = 56/113 (49%), Positives = 70/113 (61%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLM+AM+CTRPD QAV ++ RYM NPG H A+K IL I GT D+ L +
Sbjct: 1098 SLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGSEF--- 1154
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMA 5
++ G V+SD+AG+LD +ST +VFTL G V W S LQ L TE EYMA
Sbjct: 1155 TVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMA 1207
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 99.0 bits (245), Expect = 1e-18
Identities = 55/114 (48%), Positives = 73/114 (64%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAMVC+RPD A+S++ RYM NPGK H +A++ I + GT L F R
Sbjct: 1031 SLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSD--- 1087
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
++G V+SD+AG+LD RS +VFT+ G V W+++LQ T L TE EYMAI
Sbjct: 1088 GLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAI 1141
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 98.2 bits (243), Expect = 2e-18
Identities = 51/114 (44%), Positives = 71/114 (62%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
S+MY MVC+RPD AVS+I RYM PGK H QA+K + + GT +GL++ + +
Sbjct: 994 SVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLET 1053
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G V++DYAGN+D +S +VFT G V W++ LQ L TE EYMA+
Sbjct: 1054 QLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQSVVALSTTEAEYMAM 1107
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 98.2 bits (243), Expect = 2e-18
Identities = 51/114 (44%), Positives = 72/114 (63%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
S+MY MVC+RPD AVS+I RYM GK H QA+K + + GT +GL++ + +G
Sbjct: 521 SVMYTMVCSRPDLAYAVSMIRRYMSCLGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLGT 580
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G V++DY GN+D +S I +VFT+ G V W++ LQ L TE EYMA+
Sbjct: 581 QLQGFVDADYPGNIDTRKSLIGYVFTVFGGAVSWKANLQSVVALSATEAEYMAM 634
>gb|ABG22119.1| polyprotein [Cynara cardunculus var. scolymus]
Length = 358
Score = 98.2 bits (243), Expect = 2e-18
Identities = 54/116 (46%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLF--QRDYAI 170
SLMYAM+CTRPD AVS++ RYM NPG+ H +A++ +L + GT D + F RD
Sbjct: 195 SLMYAMICTRPDLAYAVSMVSRYMANPGREHWKAVQWVLRYLSGTRDYCMCFGTSRD--- 251
Query: 169 G*SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
+ G V+SDY G+LD RS +VFT+ + W++ LQPT + TE EYMAI
Sbjct: 252 --GVQGYVDSDYGGDLDGRRSLTGYVFTMGSCAISWKAVLQPTVAVSTTEAEYMAI 305
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 97.4 bits (241), Expect = 4e-18
Identities = 57/113 (50%), Positives = 68/113 (60%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLMYAM+CTRPD QAV + R+M +PGK H A+K IL I GT L F
Sbjct: 1094 SLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSEF--- 1150
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMA 5
+I G V+SD+AG+LD +ST +VFTL G V W S LQ L TE EYMA
Sbjct: 1151 TIRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMA 1203
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 97.4 bits (241), Expect = 4e-18
Identities = 52/112 (46%), Positives = 71/112 (63%)
Frame = -2
Query: 337 MYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG*SI 158
MYAMVC RPD VS++ +++ NPG+ H AIK I + G G++F + + SI
Sbjct: 471 MYAMVCIRPDLAHTVSVVSKFLSNPGRMHWDAIKWIFRYLRGXTYYGIMFSKQQSDP-SI 529
Query: 157 IGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMAI 2
G V++DYAG+LD+ RST +VFTL G +CW+S +Q L TE EYMAI
Sbjct: 530 RGYVDADYAGDLDDRRSTTGYVFTLGGGPICWKSMVQSLVALFTTESEYMAI 581
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 97.1 bits (240), Expect = 5e-18
Identities = 54/113 (47%), Positives = 68/113 (60%)
Frame = -2
Query: 343 SLMYAMVCTRPDTLQAVSIIYRYMHNPGKGH*QAIK*IL*NILGTIDIGLLFQRDYAIG* 164
SLM+AM+CTRPD QAV ++ RYM NPG+ H +K IL I GT D+ L + I
Sbjct: 1087 SLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFI-- 1144
Query: 163 SIIGCVNSDYAGNLDNCRSTIHFVFTLVGDLVCWRSTLQPTFFLLITEVEYMA 5
I G V+SDYAG+LD +ST +VF + G V W S LQ TE EY+A
Sbjct: 1145 -INGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVA 1196