BLASTX nr result
ID: Ephedra28_contig00020622
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00020622
(427 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABR16439.1| unknown [Picea sitchensis] 89 6e-16
gb|ABK25791.1| unknown [Picea sitchensis] 71 1e-10
ref|XP_003557365.1| PREDICTED: KH domain-containing protein SPIN... 66 5e-09
ref|XP_004973255.1| PREDICTED: KH domain-containing protein At4g... 65 1e-08
ref|XP_003522828.1| PREDICTED: KH domain-containing protein At5g... 65 1e-08
gb|ADE77960.1| unknown [Picea sitchensis] 65 1e-08
ref|XP_006650789.1| PREDICTED: KH domain-containing protein SPIN... 63 3e-08
ref|XP_006359981.1| PREDICTED: KH domain-containing protein At2g... 63 3e-08
ref|XP_006294628.1| hypothetical protein CARUB_v10023665mg, part... 63 3e-08
ref|XP_004246970.1| PREDICTED: KH domain-containing protein At2g... 63 3e-08
ref|XP_004137670.1| PREDICTED: KH domain-containing protein At2g... 63 3e-08
gb|AAG51340.1|AC012562_1 unknown protein; 28504-31237 [Arabidops... 63 3e-08
ref|XP_004955829.1| PREDICTED: KH domain-containing protein SPIN... 63 5e-08
tpg|DAA60062.1| TPA: nucleic acid binding protein [Zea mays] 63 5e-08
tpg|DAA39471.1| TPA: LOW QUALITY PROTEIN: hypothetical protein Z... 63 5e-08
tpg|DAA39469.1| TPA: hypothetical protein ZEAMMB73_019968 [Zea m... 63 5e-08
ref|XP_002459573.1| hypothetical protein SORBIDRAFT_02g006770 [S... 63 5e-08
ref|NP_001140438.1| hypothetical protein [Zea mays] gi|194699514... 63 5e-08
ref|NP_001150031.1| nucleic acid binding protein [Zea mays] gi|1... 63 5e-08
ref|NP_181395.1| RNA-binding KH domain-containing protein [Arabi... 63 5e-08
>gb|ABR16439.1| unknown [Picea sitchensis]
Length = 289
Score = 89.0 bits (219), Expect = 6e-16
Identities = 49/66 (74%), Positives = 55/66 (83%), Gaps = 6/66 (9%)
Frame = -1
Query: 181 MSGGRYLPYSPA-RVPSPQVGGLRSS----DHD-NTGRYLAELLAERQKLSPFNQVLPIC 20
MSGGRYL YSPA R PSPQ+GG+R+S DHD ++ RYLAELLAERQKLSPF QVLP C
Sbjct: 1 MSGGRYLQYSPAARAPSPQMGGMRTSSMPADHDTSSSRYLAELLAERQKLSPFMQVLPNC 60
Query: 19 SRLLDQ 2
SRLL+Q
Sbjct: 61 SRLLNQ 66
>gb|ABK25791.1| unknown [Picea sitchensis]
Length = 294
Score = 71.2 bits (173), Expect = 1e-10
Identities = 40/68 (58%), Positives = 44/68 (64%), Gaps = 11/68 (16%)
Frame = -1
Query: 172 GRYLPYSPARVPSPQVGGLRSS--------DHD---NTGRYLAELLAERQKLSPFNQVLP 26
GRYL YSPA PSP + S DH+ N+ RYL ELLAERQKL PF QVLP
Sbjct: 3 GRYLQYSPAGGPSPHYNSMSMSMRNPATPQDHESSSNSSRYLTELLAERQKLGPFMQVLP 62
Query: 25 ICSRLLDQ 2
ICSRLL+Q
Sbjct: 63 ICSRLLNQ 70
>ref|XP_003557365.1| PREDICTED: KH domain-containing protein SPIN1-like [Brachypodium
distachyon]
Length = 285
Score = 65.9 bits (159), Expect = 5e-09
Identities = 37/62 (59%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNT--GRYLAELLAERQKLSPFNQVLPICSRLL 8
MSG +SPAR SPQ+ G + DHD +YLAELLAE QKL PF QVLP+CSRLL
Sbjct: 1 MSGLYSQGFSPARTASPQIRG--NPDHDRLLCSQYLAELLAEHQKLGPFMQVLPVCSRLL 58
Query: 7 DQ 2
+Q
Sbjct: 59 NQ 60
>ref|XP_004973255.1| PREDICTED: KH domain-containing protein At4g26480-like [Setaria
italica]
Length = 282
Score = 64.7 bits (156), Expect = 1e-08
Identities = 33/59 (55%), Positives = 43/59 (72%)
Frame = -1
Query: 178 SGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
SGGRY+ YSP+ P L+ +DH+ +Y+AELLAE+QKL+PF QVLP SRLL+Q
Sbjct: 3 SGGRYMAYSPSPSTGPHSPHLQLADHE---KYIAELLAEKQKLTPFMQVLPCTSRLLNQ 58
>ref|XP_003522828.1| PREDICTED: KH domain-containing protein At5g56140-like [Glycine
max]
Length = 291
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = -1
Query: 187 TTMSGGRYL--PYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSR 14
+T GRY+ P SP+ PSP + GLRS+ + +YLAELL ER KLSPF VLP C R
Sbjct: 3 STSGAGRYMAFPPSPSAPPSPHLSGLRSTPLSDPDKYLAELLGERNKLSPFMAVLPHCFR 62
Query: 13 LLDQ 2
L +Q
Sbjct: 63 LFNQ 66
>gb|ADE77960.1| unknown [Picea sitchensis]
Length = 286
Score = 64.7 bits (156), Expect = 1e-08
Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 5/61 (8%)
Frame = -1
Query: 169 RYLPYSPARVPSPQVGGLRS-----SDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLD 5
RY+ +SP+ SPQ+ G+RS ++HD +YL ELLAERQKLSPF QVLP C RLL+
Sbjct: 4 RYMNFSPSATHSPQLPGMRSVSIAMAEHD---KYLTELLAERQKLSPFMQVLPQCCRLLN 60
Query: 4 Q 2
Q
Sbjct: 61 Q 61
>ref|XP_006650789.1| PREDICTED: KH domain-containing protein SPIN1-like [Oryza
brachyantha]
Length = 280
Score = 63.2 bits (152), Expect = 3e-08
Identities = 36/58 (62%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = -1
Query: 172 GRYLP-YSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
G Y P +SPAR SPQ+ RS D +YLAELLAE QKL PF QVLPICS+LL Q
Sbjct: 3 GLYSPGFSPARNLSPQI---RSGSQDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQ 57
>ref|XP_006359981.1| PREDICTED: KH domain-containing protein At2g38610-like [Solanum
tuberosum]
Length = 282
Score = 63.2 bits (152), Expect = 3e-08
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -1
Query: 172 GRYLP-YSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
G Y P +SPAR SPQ+ RS+ ++ YL+ELLAE QKL PF QVLPICSRLL+Q
Sbjct: 3 GLYNPNFSPARAASPQI---RSTPDVDSNHYLSELLAEHQKLGPFMQVLPICSRLLNQ 57
>ref|XP_006294628.1| hypothetical protein CARUB_v10023665mg, partial [Capsella rubella]
gi|482563336|gb|EOA27526.1| hypothetical protein
CARUB_v10023665mg, partial [Capsella rubella]
Length = 317
Score = 63.2 bits (152), Expect = 3e-08
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = -1
Query: 268 PCDKYSPF*YQFLSFCPRGG*VFLETTTTMSG--GRYLPYSPARVPSPQVGGLRSSDHDN 95
P ++ SP + F + RG MSG +SPAR SPQ+ RS+ +
Sbjct: 5 PLEQQSPLVWSFCT--DRGSKKESRKNQPMSGLYNNSSYFSPARAASPQI---RSTPEID 59
Query: 94 TGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
+ +YL ELLAE QKL+PF QVLPICSRLL+Q
Sbjct: 60 SSQYLTELLAEHQKLTPFMQVLPICSRLLNQ 90
>ref|XP_004246970.1| PREDICTED: KH domain-containing protein At2g38610-like [Solanum
lycopersicum]
Length = 282
Score = 63.2 bits (152), Expect = 3e-08
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Frame = -1
Query: 172 GRYLP-YSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
G Y P +SPAR SPQ+ RS+ ++ YL+ELLAE QKL PF QVLPICSRLL+Q
Sbjct: 3 GLYNPNFSPARAASPQI---RSTPDVDSNHYLSELLAEHQKLGPFMQVLPICSRLLNQ 57
>ref|XP_004137670.1| PREDICTED: KH domain-containing protein At2g38610-like [Cucumis
sativus]
Length = 351
Score = 63.2 bits (152), Expect = 3e-08
Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = -1
Query: 241 YQFLSFCP-RGG*VFLETTTTMSGGRYLP-YSPARVPSPQVGGLRSSDHDNTGRYLAELL 68
+ FL FC R + + T + G Y P +SPAR SPQ+ S D D+ +YL+ELL
Sbjct: 48 FLFLLFCCLRFRIIKRKKATQVMSGLYNPNFSPARAASPQIR--TSGDADS--QYLSELL 103
Query: 67 AERQKLSPFNQVLPICSRLLDQ 2
AE QKL PF Q+LPICSRLL+Q
Sbjct: 104 AEHQKLGPFMQILPICSRLLNQ 125
>gb|AAG51340.1|AC012562_1 unknown protein; 28504-31237 [Arabidopsis thaliana]
Length = 319
Score = 63.2 bits (152), Expect = 3e-08
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = -1
Query: 196 ETTTTMSG-GRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPIC 20
+T TMSG Y +SP+R SPQ+ R+ D +Y+++LLAE QKL PF QVLPIC
Sbjct: 32 KTEPTMSGLYNYNNFSPSRAASPQI---RTPSSDVDSQYISQLLAEHQKLGPFMQVLPIC 88
Query: 19 SRLLDQ 2
SRLL+Q
Sbjct: 89 SRLLNQ 94
>ref|XP_004955829.1| PREDICTED: KH domain-containing protein SPIN1-like [Setaria
italica]
Length = 281
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYSQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>tpg|DAA60062.1| TPA: nucleic acid binding protein [Zea mays]
Length = 361
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYSQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>tpg|DAA39471.1| TPA: LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_019968 [Zea
mays]
Length = 345
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYNQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>tpg|DAA39469.1| TPA: hypothetical protein ZEAMMB73_019968 [Zea mays]
Length = 114
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYNQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>ref|XP_002459573.1| hypothetical protein SORBIDRAFT_02g006770 [Sorghum bicolor]
gi|241922950|gb|EER96094.1| hypothetical protein
SORBIDRAFT_02g006770 [Sorghum bicolor]
Length = 281
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYSQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>ref|NP_001140438.1| hypothetical protein [Zea mays] gi|194699514|gb|ACF83841.1| unknown
[Zea mays] gi|414588899|tpg|DAA39470.1| TPA:
hypothetical protein ZEAMMB73_019968 [Zea mays]
Length = 281
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYNQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>ref|NP_001150031.1| nucleic acid binding protein [Zea mays] gi|194699002|gb|ACF83585.1|
unknown [Zea mays] gi|195636208|gb|ACG37572.1| nucleic
acid binding protein [Zea mays]
gi|414884049|tpg|DAA60063.1| TPA: nucleic acid binding
protein [Zea mays]
Length = 281
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = -1
Query: 181 MSGGRYLPYSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
MSG +SPAR SPQ+ S+ D +YLAELLAE QKL PF QVLPICSRLL+Q
Sbjct: 1 MSGLYSQGFSPARTLSPQI----RSNPDADSQYLAELLAEHQKLGPFMQVLPICSRLLNQ 56
>ref|NP_181395.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30687577|ref|NP_850296.1| RNA-binding KH
domain-containing protein [Arabidopsis thaliana]
gi|297827443|ref|XP_002881604.1| KH domain-containing
protein [Arabidopsis lyrata subsp. lyrata]
gi|75268069|sp|Q9ZVI3.1|QKIL3_ARATH RecName: Full=KH
domain-containing protein At2g38610; AltName:
Full=Quaking-like protein 3 gi|3786011|gb|AAC67357.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|14596033|gb|AAK68744.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|17473662|gb|AAL38288.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|17978787|gb|AAL47387.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|23197752|gb|AAN15403.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|297327443|gb|EFH57863.1| KH domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|330254461|gb|AEC09555.1| RNA-binding KH
domain-containing protein [Arabidopsis thaliana]
gi|330254462|gb|AEC09556.1| RNA-binding KH
domain-containing protein [Arabidopsis thaliana]
Length = 286
Score = 62.8 bits (151), Expect = 5e-08
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = -1
Query: 157 YSPARVPSPQVGGLRSSDHDNTGRYLAELLAERQKLSPFNQVLPICSRLLDQ 2
+SPAR SPQ+ RS+ ++ +YL ELLAE QKL+PF QVLPICSRLL+Q
Sbjct: 11 FSPARAASPQI---RSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQ 59