BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00020393
         (755 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004513474.1| PREDICTED: RNA polymerase-associated protein...    51   8e-14
ref|XP_004513475.1| PREDICTED: RNA polymerase-associated protein...    51   8e-14
ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...    50   1e-13
emb|CAN67377.1| hypothetical protein VITISV_017914 [Vitis vinifera]    50   1e-13
ref|XP_006587039.1| PREDICTED: RNA polymerase-associated protein...    49   2e-13
gb|ESW10664.1| hypothetical protein PHAVU_009G228100g [Phaseolus...    49   3e-13
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...    47   8e-13
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...    47   6e-12
ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...    47   6e-12
ref|XP_002974350.1| hypothetical protein SELMODRAFT_149863 [Sela...    45   6e-12
ref|XP_002990841.1| hypothetical protein SELMODRAFT_161156 [Sela...    45   6e-12
gb|EXB38929.1| RNA polymerase-associated protein CTR9-like prote...    46   8e-09
gb|EOY30289.1| Binding isoform 1 [Theobroma cacao]                     52   8e-08
gb|EOY30290.1| Binding isoform 2 [Theobroma cacao]                     52   8e-08
gb|EOY30293.1| RNA polymerase-associated protein CTR9 isoform 5 ...    52   8e-08
gb|EOY30291.1| Binding isoform 3, partial [Theobroma cacao]            52   8e-08
gb|EOY30292.1| Binding isoform 4 [Theobroma cacao]                     52   8e-08
gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabi...    47   1e-07
ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana...    47   1e-07
gb|AAL49858.1| putative TPR repeat nuclear phosphoprotein [Arabi...    47   1e-07

>ref|XP_004513474.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog isoform
           X1 [Cicer arietinum]
          Length = 1080

 Score = 50.8 bits (120), Expect(3) = 8e-14
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQ-SRSTTRSNPSFSHGISCAQADSFT*RECFE 459
           HS YNLAR+YH+ GD  KA   Y  ++K+ S+      P +  G    +   F  R    
Sbjct: 306 HSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDF--RSALS 363

Query: 458 CFSKILEMEPNDVLAMECIGYAYTPKGIL--GKQWFQRSAVYEHLSSDDYLHIRELRASL 285
            F K+LE+ P++   ++ + Y Y   G    G+++ +++   +   +  +L + EL   +
Sbjct: 364 NFEKVLEVYPDNCETLKALAYIYVQLGQTDKGQEFIRKATKIDPRDAQAFLELGEL--LI 421

Query: 284 LDQ*QEARDAYEKAR 240
           L     A DA++ AR
Sbjct: 422 LSDTGAALDAFKTAR 436



 Score = 41.2 bits (95), Expect(3) = 8e-14
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = -3

Query: 252 RESKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIW 106
           + ++ + +K  +E+P  + NNI   Q  RGE+E AK+   EALG  GIW
Sbjct: 433 KTARTLFKKGGEEVPIELLNNIGVLQFERGEFELAKQTFKEALG-DGIW 480



 Score = 31.2 bits (69), Expect(3) = 8e-14
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>ref|XP_004513475.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog isoform
           X2 [Cicer arietinum]
          Length = 956

 Score = 50.8 bits (120), Expect(3) = 8e-14
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQ-SRSTTRSNPSFSHGISCAQADSFT*RECFE 459
           HS YNLAR+YH+ GD  KA   Y  ++K+ S+      P +  G    +   F  R    
Sbjct: 182 HSYYNLARSYHSKGDYDKAGVYYMASVKEISKPHEFVFPYYGLGQVQIKLGDF--RSALS 239

Query: 458 CFSKILEMEPNDVLAMECIGYAYTPKGIL--GKQWFQRSAVYEHLSSDDYLHIRELRASL 285
            F K+LE+ P++   ++ + Y Y   G    G+++ +++   +   +  +L + EL   +
Sbjct: 240 NFEKVLEVYPDNCETLKALAYIYVQLGQTDKGQEFIRKATKIDPRDAQAFLELGEL--LI 297

Query: 284 LDQ*QEARDAYEKAR 240
           L     A DA++ AR
Sbjct: 298 LSDTGAALDAFKTAR 312



 Score = 41.2 bits (95), Expect(3) = 8e-14
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = -3

Query: 252 RESKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIW 106
           + ++ + +K  +E+P  + NNI   Q  RGE+E AK+   EALG  GIW
Sbjct: 309 KTARTLFKKGGEEVPIELLNNIGVLQFERGEFELAKQTFKEALG-DGIW 356



 Score = 31.2 bits (69), Expect(3) = 8e-14
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 145 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 176


>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
           vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
           product [Vitis vinifera]
          Length = 1091

 Score = 50.4 bits (119), Expect(3) = 1e-13
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+S         + +G+   Q      R     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPY-YGLGQVQLKLGDFRSSLSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P +  A++ +G+ Y   G   K  ++ +++   +   +  +L + EL   + 
Sbjct: 365 FEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGEL--LIT 422

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 423 SDTGAALDAFKTAR 436



 Score = 41.2 bits (95), Expect(3) = 1e-13
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = -3

Query: 252 RESKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           + ++G+L+K  +E+P  + NNI      RGE+E A++   EA+G  GIW   ++
Sbjct: 433 KTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVG-DGIWLSFID 485



 Score = 31.2 bits (69), Expect(3) = 1e-13
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>emb|CAN67377.1| hypothetical protein VITISV_017914 [Vitis vinifera]
          Length = 788

 Score = 50.4 bits (119), Expect(3) = 1e-13
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+S         + +G+   Q      R     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPY-YGLGQVQLKLGDFRSSLSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P +  A++ +G+ Y   G   K  ++ +++   +   +  +L + EL   + 
Sbjct: 365 FEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGEL--LIT 422

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 423 SDTGAALDAFKTAR 436



 Score = 41.2 bits (95), Expect(3) = 1e-13
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = -3

Query: 252 RESKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           + ++G+L+K  +E+P  + NNI      RGE+E A++   EA+G  GIW   ++
Sbjct: 433 KTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVG-DGIWLSFID 485



 Score = 31.2 bits (69), Expect(3) = 1e-13
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>ref|XP_006587039.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
           max]
          Length = 1089

 Score = 49.3 bits (116), Expect(3) = 2e-13
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   Q      +     
Sbjct: 306 HSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPY-YGLGQVQIKLGDFKSALSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGIL--GKQWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G    G+ + +++   +   +  +L + EL   +L
Sbjct: 365 FEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGEL--LIL 422

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 423 SDTGAALDAFKTAR 436



 Score = 41.6 bits (96), Expect(3) = 2e-13
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = -3

Query: 252 RESKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           + ++ + +K  +E+P  + NNI   Q  RGE+E A++   EALG  G+W   +N
Sbjct: 433 KTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALG-DGVWLSFIN 485



 Score = 31.2 bits (69), Expect(3) = 2e-13
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>gb|ESW10664.1| hypothetical protein PHAVU_009G228100g [Phaseolus vulgaris]
          Length = 1082

 Score = 48.5 bits (114), Expect(3) = 3e-13
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   Q      +     
Sbjct: 306 HSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPY-YGLGQVQVKLGDFKSALSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGIL--GKQWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ + + Y   G    G+ + +R+   +   +  +L + EL   +L
Sbjct: 365 FEKVLEVYPDNCETLKALAHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGEL--LIL 422

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 423 SDTGAALDAFKTAR 436



 Score = 41.6 bits (96), Expect(3) = 3e-13
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = -3

Query: 252 RESKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           + ++ + +K  +E+P  + NN+   Q  RGE+E A++   EALG  GIW   +N
Sbjct: 433 KTARTLFKKGGQEVPIELLNNVGVLQFERGEFELAQQTFKEALG-DGIWQSFIN 485



 Score = 31.2 bits (69), Expect(3) = 3e-13
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
           max]
          Length = 1088

 Score = 47.4 bits (111), Expect(3) = 8e-13
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   Q      +     
Sbjct: 306 HSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPY-YGLGQVQIKLGDFKSALSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGIL--GKQWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G    G+ + +++   +   +  +L + EL   +L
Sbjct: 365 FEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGEL--LIL 422

Query: 281 DQ*QEARDAYEKA 243
                A DA++ A
Sbjct: 423 SDTGAALDAFKTA 435



 Score = 41.2 bits (95), Expect(3) = 8e-13
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -3

Query: 237 VLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           + +K  +E+P  + NNI   Q  RGE+E A++   EALG  G+W   +N
Sbjct: 438 LFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALG-DGVWLSFIN 485



 Score = 31.2 bits (69), Expect(3) = 8e-13
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
           sativus]
          Length = 1074

 Score = 46.6 bits (109), Expect(3) = 6e-12
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  + K++ +  R      +G+   Q      R     
Sbjct: 303 HSFYNLARSYHSKGDYEKAGLYYMASAKEA-NKPREFVFPYYGLGQVQLKMGDLRSALSN 361

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G   K  +  +++   +   +  +L + EL  S  
Sbjct: 362 FEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELLISTD 421

Query: 281 DQ*QEARDAYEKA 243
           +    A DA++ A
Sbjct: 422 E--SAALDAFKTA 432



 Score = 38.9 bits (89), Expect(3) = 6e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 237 VLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMNG 88
           +L+K  +E+P  + NN+      R E+E A+    EALG  GIW D ++G
Sbjct: 435 LLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALG-DGIWLDFIDG 483



 Score = 31.2 bits (69), Expect(3) = 6e-12
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 266 MALNYLANHFFFTGQHFLVEQLTETALAITNH 297


>ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein
           CTR9 homolog [Cucumis sativus]
          Length = 1050

 Score = 46.6 bits (109), Expect(3) = 6e-12
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  + K++ +  R      +G+   Q      R     
Sbjct: 279 HSFYNLARSYHSKGDYEKAGLYYMASAKEA-NKPREFVFPYYGLGQVQLKMGDLRSALSN 337

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G   K  +  +++   +   +  +L + EL  S  
Sbjct: 338 FEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELLISTD 397

Query: 281 DQ*QEARDAYEKA 243
           +    A DA++ A
Sbjct: 398 E--SAALDAFKTA 408



 Score = 38.9 bits (89), Expect(3) = 6e-12
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 237 VLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMNG 88
           +L+K  +E+P  + NN+      R E+E A+    EALG  GIW D ++G
Sbjct: 411 LLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALG-DGIWLDFIDG 459



 Score = 31.2 bits (69), Expect(3) = 6e-12
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 242 MALNYLANHFFFTGQHFLVEQLTETALAITNH 273


>ref|XP_002974350.1| hypothetical protein SELMODRAFT_149863 [Selaginella moellendorffii]
           gi|300157948|gb|EFJ24572.1| hypothetical protein
           SELMODRAFT_149863 [Selaginella moellendorffii]
          Length = 1041

 Score = 45.1 bits (105), Expect(3) = 6e-12
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
 Frame = -1

Query: 632 SCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFECF 453
           S +NLAR+YH+ GD  KA   Y  ++++ +S       + +G+   Q      +     F
Sbjct: 305 SYFNLARSYHSKGDYDKAAAYYRASVQELKSPKDFILPY-YGLGQVQLKLNDLKSALSNF 363

Query: 452 SKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRAS 288
            K+L++ P +   ++ +GY +  +G   K  + F+++A       D ++ I EL  S
Sbjct: 364 EKVLDVHPENCETLKVVGYIHLQQGRNDKALESFRKAAKVSPRDVDAWIEIGELLVS 420



 Score = 37.0 bits (84), Expect(3) = 6e-12
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -3

Query: 228 KNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMNGNFS 79
           K+ +++P  + NNI      RGEY+ A+ A  EALG  G W +    NFS
Sbjct: 439 KSGEKVPLGLLNNIGVLHFERGEYKLAEGAYYEALG-EGPWKEFNENNFS 487



 Score = 34.7 bits (78), Expect(3) = 6e-12
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = -3

Query: 741 ALSNLADHNFYKGHYSIVKTLSEAALSSTQNP*IRA 634
           AL++LA+H FY   + +V+ L E AL+ST N  I++
Sbjct: 268 ALNHLANHYFYTEQHGVVEQLMETALASTDNALIKS 303


>ref|XP_002990841.1| hypothetical protein SELMODRAFT_161156 [Selaginella moellendorffii]
           gi|300141402|gb|EFJ08114.1| hypothetical protein
           SELMODRAFT_161156 [Selaginella moellendorffii]
          Length = 973

 Score = 45.1 bits (105), Expect(3) = 6e-12
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
 Frame = -1

Query: 632 SCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFECF 453
           S +NLAR+YH+ GD  KA   Y  ++++ +S       + +G+   Q      +     F
Sbjct: 278 SYFNLARSYHSKGDYDKAAAYYRASVQELKSPKDFILPY-YGLGQVQLKLNDLKSALSNF 336

Query: 452 SKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRAS 288
            K+L++ P +   ++ +GY +  +G   K  + F+++A       D ++ I EL  S
Sbjct: 337 EKVLDVHPENCETLKVVGYIHLQQGRNDKALESFRKAAKVSPRDVDAWIEIGELLVS 393



 Score = 37.0 bits (84), Expect(3) = 6e-12
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = -3

Query: 228 KNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMNGNFS 79
           K+ +++P  + NNI      RGEY+ A+ A  EALG  G W +    NFS
Sbjct: 412 KSGEKVPLGLLNNIGVLHFERGEYKLAEGAYYEALG-EGPWKEFNENNFS 460



 Score = 34.7 bits (78), Expect(3) = 6e-12
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = -3

Query: 741 ALSNLADHNFYKGHYSIVKTLSEAALSSTQNP*IRA 634
           AL++LA+H FY   + +V+ L E AL+ST N  I++
Sbjct: 241 ALNHLANHYFYTEQHGVVEQLMETALASTDNALIKS 276


>gb|EXB38929.1| RNA polymerase-associated protein CTR9-like protein [Morus
           notabilis]
          Length = 1107

 Score = 46.2 bits (108), Expect(3) = 8e-09
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   Q      +     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEVNKPNEFVFPY-YGLGQVQLKLGDFKSALAN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK-QWFQRSA 345
           F K+LE+ P++   ++ +G+ Y   G   K Q F R A
Sbjct: 365 FEKVLEVNPDNSETLKVLGHIYVQLGQTEKAQEFMRKA 402



 Score = 30.0 bits (66), Expect(3) = 8e-09
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALS 661
           MAL+ LA+H F+ G + +V+ L+E AL+
Sbjct: 269 MALNYLANHFFFTGQHFVVEQLTETALA 296



 Score = 29.6 bits (65), Expect(3) = 8e-09
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
 Frame = -3

Query: 255 IRESKGVLRKNNKEIPDPIGNNICAFQLARGEYE----------------RAKEALLEAL 124
           ++ ++ +L+K  +E P  + NN+      RGE+E                 A++   EAL
Sbjct: 432 LKTARTLLKKGGQETPIEVLNNLGVLHFERGEFEVGAVSQEYFGSLYAVVLAQQTFREAL 491

Query: 123 GTTGIWADIMNG 88
           G  GIW   ++G
Sbjct: 492 G-DGIWLAFIDG 502


>gb|EOY30289.1| Binding isoform 1 [Theobroma cacao]
          Length = 1094

 Score = 52.0 bits (123), Expect(2) = 8e-08
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   +  S   R     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGFYYMASIKEINKPHEFVFPY-YGLGQVKLKSGDFRSALSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK-QWFQRSAV-YEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G + K Q F R A+  +   +  +L + EL  S  
Sbjct: 365 FEKVLEVYPDNCETLKALGHIYVQLGQVEKAQEFMRKAIKIDPRDAQAFLDLGELLIS-- 422

Query: 281 DQ*QEARDAYEKAREY*ER 225
                A DA++ AR   E+
Sbjct: 423 SDTGAALDAFKTARSLMEK 441



 Score = 31.2 bits (69), Expect(2) = 8e-08
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>gb|EOY30290.1| Binding isoform 2 [Theobroma cacao]
          Length = 925

 Score = 52.0 bits (123), Expect(2) = 8e-08
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   +  S   R     
Sbjct: 182 HSYYNLARSYHSKGDYEKAGFYYMASIKEINKPHEFVFPY-YGLGQVKLKSGDFRSALSN 240

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK-QWFQRSAV-YEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G + K Q F R A+  +   +  +L + EL  S  
Sbjct: 241 FEKVLEVYPDNCETLKALGHIYVQLGQVEKAQEFMRKAIKIDPRDAQAFLDLGELLIS-- 298

Query: 281 DQ*QEARDAYEKAREY*ER 225
                A DA++ AR   E+
Sbjct: 299 SDTGAALDAFKTARSLMEK 317



 Score = 31.2 bits (69), Expect(2) = 8e-08
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 145 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 176


>gb|EOY30293.1| RNA polymerase-associated protein CTR9 isoform 5 [Theobroma cacao]
          Length = 858

 Score = 52.0 bits (123), Expect(2) = 8e-08
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   +  S   R     
Sbjct: 182 HSYYNLARSYHSKGDYEKAGFYYMASIKEINKPHEFVFPY-YGLGQVKLKSGDFRSALSN 240

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK-QWFQRSAV-YEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G + K Q F R A+  +   +  +L + EL  S  
Sbjct: 241 FEKVLEVYPDNCETLKALGHIYVQLGQVEKAQEFMRKAIKIDPRDAQAFLDLGELLIS-- 298

Query: 281 DQ*QEARDAYEKAREY*ER 225
                A DA++ AR   E+
Sbjct: 299 SDTGAALDAFKTARSLMEK 317



 Score = 31.2 bits (69), Expect(2) = 8e-08
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 145 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 176


>gb|EOY30291.1| Binding isoform 3, partial [Theobroma cacao]
          Length = 814

 Score = 52.0 bits (123), Expect(2) = 8e-08
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   +  S   R     
Sbjct: 182 HSYYNLARSYHSKGDYEKAGFYYMASIKEINKPHEFVFPY-YGLGQVKLKSGDFRSALSN 240

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK-QWFQRSAV-YEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G + K Q F R A+  +   +  +L + EL  S  
Sbjct: 241 FEKVLEVYPDNCETLKALGHIYVQLGQVEKAQEFMRKAIKIDPRDAQAFLDLGELLIS-- 298

Query: 281 DQ*QEARDAYEKAREY*ER 225
                A DA++ AR   E+
Sbjct: 299 SDTGAALDAFKTARSLMEK 317



 Score = 31.2 bits (69), Expect(2) = 8e-08
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 145 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 176


>gb|EOY30292.1| Binding isoform 4 [Theobroma cacao]
          Length = 702

 Score = 52.0 bits (123), Expect(2) = 8e-08
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y  ++K+          + +G+   +  S   R     
Sbjct: 306 HSYYNLARSYHSKGDYEKAGFYYMASIKEINKPHEFVFPY-YGLGQVKLKSGDFRSALSN 364

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK-QWFQRSAV-YEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ Y   G + K Q F R A+  +   +  +L + EL  S  
Sbjct: 365 FEKVLEVYPDNCETLKALGHIYVQLGQVEKAQEFMRKAIKIDPRDAQAFLDLGELLIS-- 422

Query: 281 DQ*QEARDAYEKAREY*ER 225
                A DA++ AR   E+
Sbjct: 423 SDTGAALDAFKTARSLMEK 441



 Score = 31.2 bits (69), Expect(2) = 8e-08
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = -3

Query: 744 MALSNLADHNFYKGHYSIVKTLSEAALSSTQN 649
           MAL+ LA+H F+ G + +V+ L+E AL+ T +
Sbjct: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNH 300


>gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana]
          Length = 1115

 Score = 47.4 bits (111), Expect(2) = 1e-07
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y   +K++ +          G+   Q      +     
Sbjct: 330 HSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFN 389

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ YT  G   K  ++ +++   +   +  ++ + EL  S  
Sbjct: 390 FEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLIS-- 447

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 448 SDTGAALDAFKMAR 461



 Score = 35.4 bits (80), Expect(2) = 1e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 246 SKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           ++ +++K  +E+P  + N+I A    R E+E A E   EALG  GIW   ++
Sbjct: 460 ARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALG-DGIWISFLD 510


>ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana]
           gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION
           INDEPENDENCE 6 [Arabidopsis thaliana]
           gi|330250911|gb|AEC06005.1| protein early flowering 8
           [Arabidopsis thaliana]
          Length = 1091

 Score = 47.4 bits (111), Expect(2) = 1e-07
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y   +K++ +          G+   Q      +     
Sbjct: 306 HSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFN 365

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ YT  G   K  ++ +++   +   +  ++ + EL  S  
Sbjct: 366 FEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLIS-- 423

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 424 SDTGAALDAFKMAR 437



 Score = 35.4 bits (80), Expect(2) = 1e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 246 SKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           ++ +++K  +E+P  + N+I A    R E+E A E   EALG  GIW   ++
Sbjct: 436 ARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALG-DGIWISFLD 486


>gb|AAL49858.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana]
          Length = 740

 Score = 47.4 bits (111), Expect(2) = 1e-07
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
 Frame = -1

Query: 635 HSCYNLARAYHNSGDKAKARELYSQTMKQSRSTTRSNPSFSHGISCAQADSFT*RECFEC 456
           HS YNLAR+YH+ GD  KA   Y   +K++ +          G+   Q      +     
Sbjct: 306 HSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFN 365

Query: 455 FSKILEMEPNDVLAMECIGYAYTPKGILGK--QWFQRSAVYEHLSSDDYLHIRELRASLL 282
           F K+LE+ P++   ++ +G+ YT  G   K  ++ +++   +   +  ++ + EL  S  
Sbjct: 366 FEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLIS-- 423

Query: 281 DQ*QEARDAYEKAR 240
                A DA++ AR
Sbjct: 424 SDTGAALDAFKMAR 437



 Score = 35.4 bits (80), Expect(2) = 1e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = -3

Query: 246 SKGVLRKNNKEIPDPIGNNICAFQLARGEYERAKEALLEALGTTGIWADIMN 91
           ++ +++K  +E+P  + N+I A    R E+E A E   EALG  GIW   ++
Sbjct: 436 ARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALG-DGIWISFLD 486