BLASTX nr result
ID: Ephedra28_contig00020285
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra28_contig00020285
(491 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 330 1e-88
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 329 3e-88
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 4e-88
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 4e-88
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 4e-88
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 4e-88
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 328 4e-88
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 327 1e-87
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 326 2e-87
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 324 8e-87
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 295 4e-78
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 223 3e-56
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 220 2e-55
gb|AFM77886.1| replicase [Hosta virus X] 202 4e-50
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA... 202 4e-50
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 199 2e-49
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 198 5e-49
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 193 2e-47
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 193 2e-47
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 192 4e-47
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 330 bits (846), Expect = 1e-88
Identities = 159/163 (97%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1191 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1250
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1251 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1310
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1311 PLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDD 1353
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 329 bits (843), Expect = 3e-88
Identities = 158/163 (96%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (841), Expect = 4e-88
Identities = 157/163 (96%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (841), Expect = 4e-88
Identities = 157/163 (96%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (841), Expect = 4e-88
Identities = 157/163 (96%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (841), Expect = 4e-88
Identities = 157/163 (96%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 328 bits (841), Expect = 4e-88
Identities = 157/163 (96%), Positives = 163/163 (100%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 1348
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 327 bits (838), Expect = 1e-87
Identities = 158/163 (96%), Positives = 162/163 (99%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGT
Sbjct: 1174 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGT 1233
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1234 AQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1293
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+
Sbjct: 1294 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDE 1336
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 326 bits (835), Expect = 2e-87
Identities = 156/163 (95%), Positives = 162/163 (99%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG
Sbjct: 517 KYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGA 576
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 577 AQIYAGDDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 636
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDD
Sbjct: 637 PLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDD 679
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 324 bits (830), Expect = 8e-87
Identities = 155/163 (95%), Positives = 161/163 (98%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
KYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGT
Sbjct: 1186 KYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGT 1245
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD
Sbjct: 1246 AQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 1305
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDD
Sbjct: 1306 PLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDD 1348
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 295 bits (755), Expect = 4e-78
Identities = 140/163 (85%), Positives = 152/163 (93%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+
Sbjct: 1167 KFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHV 1226
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKD
Sbjct: 1227 AQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKD 1286
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
PLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDD
Sbjct: 1287 PLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDD 1329
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 223 bits (567), Expect = 3e-56
Identities = 110/162 (67%), Positives = 126/162 (77%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GT
Sbjct: 1193 KHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGT 1252
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKD
Sbjct: 1253 AQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKD 1312
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 486
P KL ASL+L +A +G K + NY D LAY+L D
Sbjct: 1313 PAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKD 1352
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 220 bits (560), Expect = 2e-55
Identities = 109/162 (67%), Positives = 125/162 (77%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+FN+P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GT
Sbjct: 1193 KHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGT 1252
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKD
Sbjct: 1253 AQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKD 1312
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 486
P KL ASL+L +A +G K + NY D LAY+L D
Sbjct: 1313 PAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKD 1352
>gb|AFM77886.1| replicase [Hosta virus X]
Length = 1473
Score = 202 bits (514), Expect = 4e-50
Identities = 99/162 (61%), Positives = 121/162 (74%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE
Sbjct: 1266 KFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENV 1325
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD A+++VCPEK SF +R+ L++KP PQ +G WAEFCG LITP+G+IKD
Sbjct: 1326 AQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKD 1385
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 486
P+KLHAS LA K G I + +Y D KL+Y LGD
Sbjct: 1386 PVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGD 1423
>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
[Hosta virus X]
Length = 1507
Score = 202 bits (514), Expect = 4e-50
Identities = 99/162 (61%), Positives = 121/162 (74%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE
Sbjct: 1300 KFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENV 1359
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD A+++VCPEK SF +R+ L++KP PQ +G WAEFCG LITP+G+IKD
Sbjct: 1360 AQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKD 1419
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGD 486
P+KLHAS LA K G I + +Y D KL+Y LGD
Sbjct: 1420 PVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGD 1457
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 199 bits (507), Expect = 2e-49
Identities = 104/168 (61%), Positives = 121/168 (72%), Gaps = 5/168 (2%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ N+PEWV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+IPEG
Sbjct: 1260 KHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGV 1319
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPK 345
AQ D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCGYLITPK
Sbjct: 1320 AQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPK 1374
Query: 346 GLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
GLIKDPLKL AS LAK + K + N + NY+ D KLAY LGDD
Sbjct: 1375 GLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDD 1418
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 198 bits (504), Expect = 5e-49
Identities = 95/158 (60%), Positives = 122/158 (77%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF++P+GT
Sbjct: 1514 KHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDVPKGT 1573
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFCGYLITP G++KD
Sbjct: 1574 AQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLGIMKD 1633
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 474
P KL A++ LA+ Q K + +++LD KLAY
Sbjct: 1634 PAKLAATVVLAQKQNK------LHECWRSHALDLKLAY 1665
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 193 bits (490), Expect = 2e-47
Identities = 97/163 (59%), Positives = 122/163 (74%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+TH +F+IP+GT
Sbjct: 1345 KHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTHAKFQIPKGT 1404
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD AI P + SF L++ ++ L++KPA QE+G WAEFCGY ITPKG IKD
Sbjct: 1405 AQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGFIKD 1464
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
P KLHASL L +KK G + NV+ +Y LD LAY D+
Sbjct: 1465 PKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHRDE 1501
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 193 bits (490), Expect = 2e-47
Identities = 97/163 (59%), Positives = 122/163 (74%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+TH +F+IP+GT
Sbjct: 1345 KHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFTHAKFQIPKGT 1404
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD AI P + SF L++ ++ L++KPA QE+G WAEFCGY ITPKG IKD
Sbjct: 1405 AQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGYRITPKGFIKD 1464
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
P KLHASL L +KK G + NV+ +Y LD LAY D+
Sbjct: 1465 PKKLHASLVL---EKKRG---NLKNVLRSYELDLALAYQHRDE 1501
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 192 bits (488), Expect = 4e-47
Identities = 96/163 (58%), Positives = 121/163 (74%)
Frame = +1
Query: 1 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 180
K+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+TH +F+IP+GT
Sbjct: 1345 KHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHAKFQIPKGT 1404
Query: 181 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 360
AQ+YAGDD AI P + SF +++ ++ L++KP QE+G WAEFCGY ITPKG IKD
Sbjct: 1405 AQLYAGDDSAIDGNPPVRESFRMIEQKLKLRSKPVVAMQEKGDWAEFCGYRITPKGFIKD 1464
Query: 361 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDD 489
P KLHASL L K KK +K NV+ +Y LD LAY D+
Sbjct: 1465 PKKLHASLVLEK--KKGNLK----NVLRSYELDLALAYQHRDE 1501