BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra28_contig00019959
         (1758 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17974.1| unknown [Picea sitchensis]                             540   e-150
ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Sela...   425   e-116
ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Sela...   419   e-114
ref|XP_002982504.1| hypothetical protein SELMODRAFT_421928 [Sela...   414   e-113
ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa ...   383   e-103
emb|CBI31214.3| unnamed protein product [Vitis vinifera]              383   e-103
ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP15...   375   e-101
gb|EMT11226.1| Transcription factor IIIB 70 kDa subunit [Aegilop...   371   e-100
ref|XP_002440164.1| hypothetical protein SORBIDRAFT_09g027090 [S...   371   e-100
ref|XP_003578728.1| PREDICTED: transcription factor IIIB 60 kDa ...   366   2e-98
ref|XP_004966244.1| PREDICTED: transcription factor IIIB 90 kDa ...   365   3e-98
ref|XP_004966245.1| PREDICTED: transcription factor IIIB 90 kDa ...   365   4e-98
ref|NP_001141990.1| hypothetical protein [Zea mays] gi|194706710...   362   3e-97
gb|AFW78950.1| hypothetical protein ZEAMMB73_136276 [Zea mays]        360   1e-96
ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus ...   360   1e-96
ref|NP_001055147.1| Os05g0305100 [Oryza sativa Japonica Group] g...   359   2e-96
ref|XP_006354652.1| PREDICTED: transcription factor IIIB 90 kDa ...   359   2e-96
ref|XP_004229719.1| PREDICTED: transcription factor IIIB 90 kDa ...   356   2e-95
ref|XP_004296706.1| PREDICTED: transcription factor IIIB 90 kDa ...   355   4e-95
gb|AFW80945.1| hypothetical protein ZEAMMB73_313717 [Zea mays] g...   355   4e-95

>gb|ABR17974.1| unknown [Picea sitchensis]
          Length = 746

 Score =  540 bits (1390), Expect = e-150
 Identities = 270/412 (65%), Positives = 320/412 (77%), Gaps = 4/412 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKS-GAESQLSGNLVRYN 514
            MVWCS+CGKDQ TE DDINGF+CCTGCGRV+DDNI+SSDPTF+K+ G +SQ SGN ++  
Sbjct: 1    MVWCSYCGKDQPTERDDINGFICCTGCGRVLDDNIYSSDPTFVKTAGGQSQFSGNFIKDG 60

Query: 515  QYSA-NRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIA 691
            QYS+  R  G     Y +K+DSHE+TL++G+EEIE+IA +LS+S R+  V + HRLYIIA
Sbjct: 61   QYSSYGRLGGDLVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSGREDSVNAGHRLYIIA 120

Query: 692  VERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLL 871
            VER FT+GRR KQVA A LYI+CRQEQKP              YVLGAVFLQLC +LRL 
Sbjct: 121  VERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQLCKLLRLE 180

Query: 872  QHPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGL 1051
            QHPIIQKPVDP LFIHRFADRL+GR+ TRKQ+HSI NTALRIL SMKRDW+QTGRKPSG+
Sbjct: 181  QHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTALRILASMKRDWMQTGRKPSGV 240

Query: 1052 CGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELE 1231
            CGAALYISALSHG  CTK++V+S+VHICE TLTKRLIEFE T+SGSLTIEEFESKAKELE
Sbjct: 241  CGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEFENTDSGSLTIEEFESKAKELE 300

Query: 1232 TEMQSFCSPANN--QKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGS 1405
             EMQ+   PA N   K I+ + +L+CEHKD  S +HFAHGLCHSCYEE +K+SGG+QGGS
Sbjct: 301  AEMQTIKVPAINAETKGIKGITDLLCEHKDTGS-AHFAHGLCHSCYEEFVKLSGGIQGGS 359

Query: 1406 NPPAFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQET 1561
             PPAFQRAEK+R+E+AL KKQ +L             I  +   +  +  ET
Sbjct: 360  APPAFQRAEKQRKEDALHKKQDKLLFFDEEDEEDQYQIGTQKCFEDTARMET 411


>ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
            gi|300151081|gb|EFJ17728.1| hypothetical protein
            SELMODRAFT_444750 [Selaginella moellendorffii]
          Length = 636

 Score =  425 bits (1092), Expect = e-116
 Identities = 223/428 (52%), Positives = 297/428 (69%), Gaps = 16/428 (3%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWCS+CGKDQ  EH+D  GF+CCTGCGRV+DDN+FSS+PTF KS + +SQ  GN+V+ +
Sbjct: 1    MVWCSYCGKDQIAEHND--GFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVKQS 58

Query: 515  QYSA-----NRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRL 679
            QY       +   G  SG   Y+++SH+RTLD+G++EI  IA +LS+   D IV S+HR+
Sbjct: 59   QYGTYARIVDDGTGTVSG---YQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRI 115

Query: 680  YIIAVERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGV 859
            Y++AVE+ FTKGRR  QVA A LYI+CRQ  KP              Y+LGAVFLQLC +
Sbjct: 116  YVLAVEKNFTKGRRTSQVAAACLYIVCRQGNKPYLLIDFSDCLQTSVYLLGAVFLQLCTL 175

Query: 860  LRLLQHPIIQKPVDPCLFIHRFADRLLGRSA---TRKQYHSICNTALRILTSMKRDWLQT 1030
            LRL QHP++QKPVDP LFIHRF DRLL R A   + K   +I NTALRI+ SMK+DW+QT
Sbjct: 176  LRLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQT 235

Query: 1031 GRKPSGLCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFE 1210
            GR+PSG+CGAAL +S   HG+ C+ ++V SVV++C+AT+TKRL+EF  TE+GSLT EEFE
Sbjct: 236  GRRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEFSNTEAGSLTPEEFE 295

Query: 1211 SKAKELETEMQSFCSP--ANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKIS 1384
            +KAK+ E EM S       NN      + E++CEHKD +   H+AHGLC +CY++ +KIS
Sbjct: 296  AKAKQREKEMLSVSQTDIVNN----GVIKEILCEHKD-SGAQHYAHGLCKNCYDDFVKIS 350

Query: 1385 GGLQGGSNPPAFQRAEKKRQEEALSKKQ---AELFXXXXXXXXXXQS--ISQESLKQSVS 1549
            GGLQGGS PPAFQRA+K+R+    +KK+   AE             S  ++++++K+ + 
Sbjct: 351  GGLQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDEDEDLTCTNSSPVAEKAIKKKLE 410

Query: 1550 AQETSDLD 1573
             +E S  D
Sbjct: 411  QEEHSYFD 418


>ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
            gi|300163033|gb|EFJ29645.1| hypothetical protein
            SELMODRAFT_410325 [Selaginella moellendorffii]
          Length = 507

 Score =  419 bits (1077), Expect = e-114
 Identities = 214/371 (57%), Positives = 269/371 (72%), Gaps = 3/371 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWCS+C KDQ  + DDINGF CCTGCGRV+DDN++SS+PTF K  A +SQL GN++R  
Sbjct: 1    MVWCSYCAKDQIADRDDINGFTCCTGCGRVLDDNVYSSEPTFCKGSAGQSQLVGNIIRSG 60

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
            QYS     G   G   +++ SHE+TL+RG+ EI  IA +LS+S RD  V ++HRLY++AV
Sbjct: 61   QYSR---IGSDPGYSGFQSASHEKTLERGRNEIGDIADSLSISGRDDAVGAAHRLYVLAV 117

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            E+ FTKGRR +QVA A LYI+CRQE KP                     LQ+  +LRL +
Sbjct: 118  EKSFTKGRRTQQVAAACLYIVCRQENKPYLLIDFSDS------------LQVNVLLRLEE 165

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRS--ATRKQYHSICNTALRILTSMKRDWLQTGRKPSG 1048
            HPI+ KPVDP LFIHRF DRLLG S  +  +++H+I NTALRI+ SMKRDW+QTGRKPSG
Sbjct: 166  HPIMAKPVDPSLFIHRFTDRLLGLSNGSFGRKHHAIANTALRIVASMKRDWIQTGRKPSG 225

Query: 1049 LCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKEL 1228
            +CGAAL++SA  HG  C+KS+V+SVVH+C  TLTKRL+EF  TESGSLT EEFE+KAKEL
Sbjct: 226  VCGAALFVSAQIHGFECSKSDVVSVVHVCGDTLTKRLVEFGNTESGSLTPEEFEAKAKEL 285

Query: 1229 ETEMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSN 1408
            E +      P  +      + E++CEHK+L + SH AHGLC SC++E MK+SGGL+G SN
Sbjct: 286  ELQ-----EPVPHVNFKGHLTEILCEHKELGA-SHHAHGLCRSCFDEFMKVSGGLEGESN 339

Query: 1409 PPAFQRAEKKR 1441
            PPAFQRAEKKR
Sbjct: 340  PPAFQRAEKKR 350


>ref|XP_002982504.1| hypothetical protein SELMODRAFT_421928 [Selaginella moellendorffii]
            gi|300149603|gb|EFJ16257.1| hypothetical protein
            SELMODRAFT_421928 [Selaginella moellendorffii]
          Length = 588

 Score =  414 bits (1064), Expect = e-113
 Identities = 232/487 (47%), Positives = 315/487 (64%), Gaps = 16/487 (3%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWCS+CGKDQ  EH+D  GF+CCTGCGRV+DDN+FSS+PTF KS + +SQ  GN+V+ +
Sbjct: 1    MVWCSYCGKDQIAEHND--GFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVKQS 58

Query: 515  QYSA-----NRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRL 679
            QY       +   G  SG   Y+++SH+RTLD+G++EI  IA +LS+   D IV S+HR+
Sbjct: 59   QYGTYARIVDDGTGTVSG---YQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRI 115

Query: 680  YIIAVERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGV 859
            Y++AVE+ FTKGRR  QVA A LYI+CR                   Y+LGAVFLQLC +
Sbjct: 116  YVLAVEKNFTKGRRTSQVAAACLYIVCR-------------------YLLGAVFLQLCTL 156

Query: 860  LRLLQHPIIQKPVDPCLFIHRFADRLLGRSA---TRKQYHSICNTALRILTSMKRDWLQT 1030
            LRL QHP++QKPVDP LFIHRF DRLL R A   + K   +I NTALRI+ SMK+DW+QT
Sbjct: 157  LRLDQHPMVQKPVDPSLFIHRFTDRLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQT 216

Query: 1031 GRKPSGLCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFE 1210
            GR+PSG+CGAAL +S   HG+ C+ ++V SVV++C+AT+TKRL+EF  TE+GSLT EEFE
Sbjct: 217  GRRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEFSNTEAGSLTPEEFE 276

Query: 1211 SKAKELETEMQSFCSP--ANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKIS 1384
            +KAK+ E EM S       NN      + E++CEHKD +   H+AHGLC +CY++ +KIS
Sbjct: 277  AKAKQREKEMLSVSQTDIVNN----GVIKEILCEHKD-SGAQHYAHGLCKNCYDDFVKIS 331

Query: 1385 GGLQGGSNPPAFQRAEKKRQEEALSKKQ---AELFXXXXXXXXXXQS--ISQESLKQSVS 1549
            GGLQGGS PPAFQRA+K+R+    +KK+   AE             S  ++++++K+ + 
Sbjct: 332  GGLQGGSAPPAFQRAQKERERLLKNKKRKLTAEAISDEDEDLTCTNSSPVAEKAIKKKLE 391

Query: 1550 AQETSDLDRKLGGAKPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMN 1729
             +E S  D     A  V E        AE + E +   +    SD+     D+++  E  
Sbjct: 392  QEEHSYFD-----ADDVTESCVTHETKAEKRYEDSVDDEPESLSDI----DDEQEAKEAA 442

Query: 1730 MKGDGEN 1750
            +K   E+
Sbjct: 443  LKAQAES 449


>ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Vitis
            vinifera]
          Length = 529

 Score =  383 bits (984), Expect = e-103
 Identities = 225/479 (46%), Positives = 290/479 (60%), Gaps = 6/479 (1%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWC++C +D RTE   +NG+LCCT CG+VVD + FS+DP F+K+ A +SQ+SGN V+  
Sbjct: 1    MVWCTNCARDCRTERL-LNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTV 59

Query: 515  Q--YSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYII 688
            Q  YSA+R                ERTL+    EI  IA  + +S  DSI+  +   Y I
Sbjct: 60   QSDYSASR----------------ERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTI 103

Query: 689  AVERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRL 868
            A+ER FT+GRR +QVA A LYI CR+ +KP              YVLGAVFLQLC +L L
Sbjct: 104  ALERNFTRGRRKEQVAAACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSL 163

Query: 869  LQHPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSG 1048
             +HPI+QKPVDP LFIHRFA  L G +        +  TALRI+ SMKRDWLQTGRKPSG
Sbjct: 164  EEHPIVQKPVDPSLFIHRFAAGLPGETNM-----GVSKTALRIIASMKRDWLQTGRKPSG 218

Query: 1049 LCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKEL 1228
            LCGAALYISALS+G+ C+K++++ +VHICEATLTKRLIEFE TESGSLTIEEF  KA+EL
Sbjct: 219  LCGAALYISALSYGLKCSKTDIVKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEEL 278

Query: 1229 ETEMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSN 1408
            E E  S    +N    +    EL+CEHK  +    FAHGLC  CY E +K+SGGL+GGS 
Sbjct: 279  EKEYSS-TKQSNIGSTVPGKGELLCEHKG-SGKPPFAHGLCEICYGEFIKLSGGLEGGSE 336

Query: 1409 PPAFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDL--DRKL 1582
            PPAFQRAE+ R  +A +++ A+              + + S    V   E+S L   + +
Sbjct: 337  PPAFQRAERDRMAKAAAEENAD---------SNQIQLDKGSSSPDVCGNESSKLAEPKSI 387

Query: 1583 GGA-KPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMNMKGDGENEE 1756
            G + K          D+    +E A A         G+ S    DID++ + G   NE+
Sbjct: 388  GASDKQASIDEGAPSDLHGADDENANA---------GDESESLSDIDDVEVDGYLHNEK 437


>emb|CBI31214.3| unnamed protein product [Vitis vinifera]
          Length = 622

 Score =  383 bits (984), Expect = e-103
 Identities = 225/479 (46%), Positives = 290/479 (60%), Gaps = 6/479 (1%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWC++C +D RTE   +NG+LCCT CG+VVD + FS+DP F+K+ A +SQ+SGN V+  
Sbjct: 1    MVWCTNCARDCRTERL-LNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTV 59

Query: 515  Q--YSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYII 688
            Q  YSA+R                ERTL+    EI  IA  + +S  DSI+  +   Y I
Sbjct: 60   QSDYSASR----------------ERTLNDAYAEIGHIANAIGVSGGDSIIRPALAFYTI 103

Query: 689  AVERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRL 868
            A+ER FT+GRR +QVA A LYI CR+ +KP              YVLGAVFLQLC +L L
Sbjct: 104  ALERNFTRGRRKEQVAAACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSL 163

Query: 869  LQHPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSG 1048
             +HPI+QKPVDP LFIHRFA  L G +        +  TALRI+ SMKRDWLQTGRKPSG
Sbjct: 164  EEHPIVQKPVDPSLFIHRFAAGLPGETNM-----GVSKTALRIIASMKRDWLQTGRKPSG 218

Query: 1049 LCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKEL 1228
            LCGAALYISALS+G+ C+K++++ +VHICEATLTKRLIEFE TESGSLTIEEF  KA+EL
Sbjct: 219  LCGAALYISALSYGLKCSKTDIVKIVHICEATLTKRLIEFENTESGSLTIEEFNMKAEEL 278

Query: 1229 ETEMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSN 1408
            E E  S    +N    +    EL+CEHK  +    FAHGLC  CY E +K+SGGL+GGS 
Sbjct: 279  EKEYSS-TKQSNIGSTVPGKGELLCEHKG-SGKPPFAHGLCEICYGEFIKLSGGLEGGSE 336

Query: 1409 PPAFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDL--DRKL 1582
            PPAFQRAE+ R  +A +++ A+              + + S    V   E+S L   + +
Sbjct: 337  PPAFQRAERDRMAKAAAEENAD---------SNQIQLDKGSSSPDVCGNESSKLAEPKSI 387

Query: 1583 GGA-KPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMNMKGDGENEE 1756
            G + K          D+    +E A A         G+ S    DID++ + G   NE+
Sbjct: 388  GASDKQASIDEGAPSDLHGADDENANA---------GDESESLSDIDDVEVDGYLHNEK 437


>ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP1545]
            gi|226457305|gb|EEH54604.1| predicted protein [Micromonas
            pusilla CCMP1545]
          Length = 1016

 Score =  375 bits (962), Expect = e-101
 Identities = 185/378 (48%), Positives = 257/378 (67%), Gaps = 4/378 (1%)
 Frame = +2

Query: 329  LATMVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLV 505
            +  + WC++C ++   E ++ NGF CCT CG+++DDN+FS+DPTF K+    +Q+ GN V
Sbjct: 5    MPALPWCTNCQEEVEAETNESNGFTCCTQCGKILDDNVFSTDPTFTKTATGATQVDGNFV 64

Query: 506  RYNQYSANRSFGVSSGG-YEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLY 682
                     S G   G  +  + DSHE+T+++GK EI+ +A  L +  R+ I  ++HRLY
Sbjct: 65   NETGIGQGVSRGTRGGRLFGLQVDSHEKTINKGKHEIQQVADRLGIRPREDITGAAHRLY 124

Query: 683  IIAVERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVL 862
             +AV+R FT+GRR +QVAGA LYI+CRQE +P              YVLGAVFLQLC +L
Sbjct: 125  KLAVQRNFTRGRRTQQVAGACLYIVCRQESRPYMLIDFSDVVQTNVYVLGAVFLQLCRLL 184

Query: 863  RLLQHPIIQKPVDPCLFIHRFADRL-LGRSATRKQYHSICNTALRILTSMKRDWLQTGRK 1039
            RL QHP+I KP+DP LFIHRFAD+L LGR     + H++ NTALR++ SMKRDW+QTGR+
Sbjct: 185  RLEQHPLISKPIDPSLFIHRFADKLNLGR-----RMHAVANTALRLVASMKRDWMQTGRR 239

Query: 1040 PSGLCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKA 1219
            PSG+CGAAL+++AL HG   +K +V++VVH+ EATL KR+ EFE T S  L+I+EF+++A
Sbjct: 240  PSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVSEFENTPSAQLSIDEFDARA 299

Query: 1220 KELETEM-QSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQ 1396
            K+LE E  Q   S A       S   + C HKD    +HFAHG+C  CY E  ++SGG +
Sbjct: 300  KDLEKEQAQLGDSGATLLLGDASTKTMTCVHKDHEGAAHFAHGMCRMCYVEYARVSGGSR 359

Query: 1397 GGSNPPAFQRAEKKRQEE 1450
            GG +PPAFQ AE++R++E
Sbjct: 360  GGEDPPAFQAAEQRREKE 377


>gb|EMT11226.1| Transcription factor IIIB 70 kDa subunit [Aegilops tauschii]
          Length = 583

 Score =  371 bits (953), Expect = e-100
 Identities = 212/479 (44%), Positives = 294/479 (61%), Gaps = 6/479 (1%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIK-SGAESQLSGNLVRYN 514
            MV+C+HC        D   G++CC  CG+V+D  I++ +PTF+K S   S+L+GN++   
Sbjct: 1    MVYCTHCADYCPYIKDPDKGYICCGTCGKVLDQEIYTDEPTFVKDSSGASRLAGNILS-- 58

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
                     + SG     + SHERTL +G++EI  I  +L +   D+I++ +H+ Y +AV
Sbjct: 59   --------SIESGS----SLSHERTLMKGRDEIWQIVTSLHVGGGDTIIDMAHKFYTLAV 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +  FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL L +
Sbjct: 107  DHNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAE 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HPI+QK +DP LFIHRF +RLLG     K+ +++ +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPIVQKLIDPSLFIHRFTERLLG-----KRDNAVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TKS +++VVH+CEATLTKRLIEFE T+SGSLTIE+F +KA E E 
Sbjct: 222  GAALYIAALSHGYNYTKSNIVAVVHVCEATLTKRLIEFENTDSGSLTIEDFLAKADE-EP 280

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
             +  F SP +         E++C+HKD  +  HFAHGLC  CY +  K+SGGL+GG++PP
Sbjct: 281  PVSKF-SPISG--------EVLCKHKD-KAAEHFAHGLCEKCYNKFTKLSGGLEGGADPP 330

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGGA- 1591
            AFQRAEK+R E A   ++A              +I +  L +S+   + SD +  +    
Sbjct: 331  AFQRAEKQRLEAAKKAEEA-------------AAIKEAMLGESICEMQNSDAEHNIMSTT 377

Query: 1592 -KPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKE---DIDEMNMKGDGENEE 1756
               V +KSA A    E+ ++  T+    +  + G   +D E   DID++ + G   NEE
Sbjct: 378  EDSVGDKSA-AIGSGEIGKDYVTSKDPEVGGENGKADADPESFSDIDDVEVDGYLHNEE 435


>ref|XP_002440164.1| hypothetical protein SORBIDRAFT_09g027090 [Sorghum bicolor]
            gi|241945449|gb|EES18594.1| hypothetical protein
            SORBIDRAFT_09g027090 [Sorghum bicolor]
          Length = 579

 Score =  371 bits (953), Expect = e-100
 Identities = 206/477 (43%), Positives = 287/477 (60%), Gaps = 4/477 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MV+C+HC     +  D   G++CC  CG+V+D  +++ +PTF+K    ES+L+G+++   
Sbjct: 1    MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTEEPTFVKGNTGESRLAGSILASI 60

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
            +            GY     SH+RTLD+GK+EI  I  NL++S  ++IV  ++R Y +AV
Sbjct: 61   E-----------SGYSI---SHQRTLDKGKDEIRQIVNNLNVSGGETIVSKAYRFYELAV 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL L  
Sbjct: 107  DRNFTRGRRTTHVAAACLYIACRQTKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLAD 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HP++QK VDP LFIHRF  RLLG     K+ +++ +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPVVQKLVDPSLFIHRFTHRLLG-----KRDNAVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TK++++SVVH+CEATLTKRLIEFE T+SGSLTIEEF + A E   
Sbjct: 222  GAALYIAALSHGKNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADEYNE 281

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E     SP +         E++C+HK+     HFAHGLC  CY +  K+SGGL+GG++PP
Sbjct: 282  EPVPKHSPKSG--------EILCKHKNKKGFEHFAHGLCEKCYNKFTKLSGGLEGGADPP 333

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGGAK 1594
            AFQRAEKKR E A   ++A              ++ + +L++S+   + S+++  +   K
Sbjct: 334  AFQRAEKKRLEAAKRAEEA-------------ATVKEAALEESLCNTQNSEVESTITPRK 380

Query: 1595 PVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKE---DIDEMNMKGDGENEE 1756
             +    +      EL  +           +   G++D E   DID+  +     NEE
Sbjct: 381  GLSGHKSSTVGSGELINDSVPPKDPEEGGENCEGNADSESLSDIDDAEVDWYLHNEE 437


>ref|XP_003578728.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like
            [Brachypodium distachyon]
          Length = 580

 Score =  366 bits (939), Expect = 2e-98
 Identities = 207/479 (43%), Positives = 292/479 (60%), Gaps = 6/479 (1%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSG-AESQLSGNLVRYN 514
            M +C+HC        D   G++CC  CG+V+D +I++++PTF+K G  +SQ +GN++   
Sbjct: 1    MFYCTHCADYCPYIKDPDKGYICCGTCGKVLDQDIYNAEPTFVKDGLGQSQRAGNVIS-- 58

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
                     + SG     + SHERTL +G++EI  I  +L +   D+I++ +H+ Y +AV
Sbjct: 59   --------SIESGS----SLSHERTLMKGRDEIWQIVTSLHVGGGDTIIDMAHKFYTLAV 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +  FT+GRR  QVA A LYI CRQ +K               YVLGAVFLQLC VL L +
Sbjct: 107  DHNFTRGRRTTQVAAACLYIACRQSKKAYLLIDFSDYLKISVYVLGAVFLQLCQVLLLAE 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HPI+QK +DP LFIHRF +RLLG     K+ +++ +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPIVQKLIDPSLFIHRFTERLLG-----KRDNAVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TKS+++ VVHICEATLTKRLIEFE T+SGSLTIE+F +KA     
Sbjct: 222  GAALYIAALSHGYNYTKSDIVGVVHICEATLTKRLIEFENTDSGSLTIEDFLAKA----D 277

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E Q    P+          E++C+HKD   T HFAHGLC  CY + +K+SGGL+GG++PP
Sbjct: 278  EEQPVSKPSRKS------GEVLCKHKD-KDTEHFAHGLCEKCYNKFIKMSGGLEGGADPP 330

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGGAK 1594
            AFQRAE++R E A   ++A              ++ + +L +S    + SD++  +   K
Sbjct: 331  AFQRAERQRLEAAKKSEEA-------------AALKEAALGESNCEIQNSDVEDNIISLK 377

Query: 1595 --PVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKE---DIDEMNMKGDGENEE 1756
              P+ +KS+         +  A+    +   +     +D E   DID++ + G   NEE
Sbjct: 378  KGPIGDKSSTIPSEQNANDNIASKDPEV-GGENSKPDADPESFSDIDDVEVDGYLHNEE 435


>ref|XP_004966244.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform X2
            [Setaria italica]
          Length = 574

 Score =  365 bits (937), Expect = 3e-98
 Identities = 204/477 (42%), Positives = 290/477 (60%), Gaps = 4/477 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKS-GAESQLSGNLVRYN 514
            MV+C+HC     +  D   G++CC  CG+V+D+ I++ +PTF+K     S+L+G+++   
Sbjct: 1    MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDEEIYTDEPTFVKDPSGTSRLAGSIL--- 57

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
                      +S G  Y   S ERTL++GK+EI  I  NL +S  ++I+  ++  Y +A+
Sbjct: 58   ----------ASIGSHYSM-SRERTLEKGKDEISQIVNNLHVSGGETIISKAYCFYKLAI 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL L  
Sbjct: 107  DRNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLAD 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HP++QK +DP LFIHRF +RLLGR     + +++ +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPVVQKLIDPSLFIHRFTERLLGR-----RDNAVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TK++V++VVH+CEATLTKRLIEFE T+SGSLTIEEF + A E   
Sbjct: 222  GAALYIAALSHGYNYTKADVVAVVHVCEATLTKRLIEFESTDSGSLTIEEFLATADEYNQ 281

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E      P + + +     E++C+HK      HFAHGLC  CY +  K+SGGL+GG+NPP
Sbjct: 282  E------PVSKRSLKSG--EILCKHKGKEGFEHFAHGLCEKCYNKFTKLSGGLEGGANPP 333

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGGAK 1594
            AFQRAEK+R E A   ++A              ++ + +L++S+   + SD++    G +
Sbjct: 334  AFQRAEKQRLEAAKRAEEA-------------VAVKEAALEESLCDTQNSDVENPRKGVR 380

Query: 1595 PVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKE---DIDEMNMKGDGENEE 1756
              ++KS+      EL  +   +       +   G +D E   DID++ +     NEE
Sbjct: 381  --EDKSSTVAS-GELTNDSEVSKDPEGGGENCEGDADPESLSDIDDVEVDWYLHNEE 434


>ref|XP_004966245.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform X3
            [Setaria italica]
          Length = 576

 Score =  365 bits (936), Expect = 4e-98
 Identities = 206/479 (43%), Positives = 293/479 (61%), Gaps = 6/479 (1%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKS-GAESQLSGNLVRYN 514
            MV+C+HC     +  D   G++CC  CG+V+D+ I++ +PTF+K     S+L+G+++   
Sbjct: 1    MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDEEIYTDEPTFVKDPSGTSRLAGSIL--- 57

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
                      +S G  Y   S ERTL++GK+EI  I  NL +S  ++I+  ++  Y +A+
Sbjct: 58   ----------ASIGSHYSM-SRERTLEKGKDEISQIVNNLHVSGGETIISKAYCFYKLAI 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL L  
Sbjct: 107  DRNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLAD 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HP++QK +DP LFIHRF +RLLGR     + +++ +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPVVQKLIDPSLFIHRFTERLLGR-----RDNAVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TK++V++VVH+CEATLTKRLIEFE T+SGSLTIEEF + A E   
Sbjct: 222  GAALYIAALSHGYNYTKADVVAVVHVCEATLTKRLIEFESTDSGSLTIEEFLATADEYNQ 281

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E      P + + +     E++C+HK      HFAHGLC  CY +  K+SGGL+GG+NPP
Sbjct: 282  E------PVSKRSLKSG--EILCKHKGKEGFEHFAHGLCEKCYNKFTKLSGGLEGGANPP 333

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLD--RKLGG 1588
            AFQRAEK+R E A   ++A              ++ + +L++S+   + SD++  RK+ G
Sbjct: 334  AFQRAEKQRLEAAKRAEEA-------------VAVKEAALEESLCDTQNSDVENPRKVIG 380

Query: 1589 AKPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKE---DIDEMNMKGDGENEE 1756
             +  ++KS+      EL  +   +       +   G +D E   DID++ +     NEE
Sbjct: 381  VR--EDKSSTVAS-GELTNDSEVSKDPEGGGENCEGDADPESLSDIDDVEVDWYLHNEE 436


>ref|NP_001141990.1| hypothetical protein [Zea mays] gi|194706710|gb|ACF87439.1| unknown
            [Zea mays] gi|413946300|gb|AFW78949.1| hypothetical
            protein ZEAMMB73_136276 [Zea mays]
          Length = 580

 Score =  362 bits (929), Expect = 3e-97
 Identities = 204/477 (42%), Positives = 284/477 (59%), Gaps = 4/477 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSG-AESQLSGNLVRYN 514
            MV+C+HC     +  D   G++CC  CG+V+D  +++ +PTF+K    +S+L+G+++   
Sbjct: 1    MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
            +            GY     S +RTLD+G++EI  I  NL +S  ++IV  + R Y +A+
Sbjct: 61   E-----------SGYSM---SRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELAL 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL+L +
Sbjct: 107  DRNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAE 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HP++QK VDP LFIHRF   LLGR     + + + +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPVVQKLVDPSLFIHRFTKLLLGR-----RNNDVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TK++++SVVH+CEATLTKRLIEFE T+SGSLTIEEF + A E   
Sbjct: 222  GAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADESNE 281

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E  S  SP +         E++C+HKD     HFAHGLC  CY +  K+SGGL+GGS+PP
Sbjct: 282  EPVSKHSPKSG--------EILCKHKD-KGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPP 332

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGGAK 1594
            AFQRAEKKR E A   ++A              +  + +L++S+   + S+++  +   K
Sbjct: 333  AFQRAEKKRLEAAKRAEEA-------------AAAKEAALEESLCDTQNSEVESAMTPRK 379

Query: 1595 PVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKE---DIDEMNMKGDGENEE 1756
             +    +       L  +           +   G++D E   DID+  + G   NEE
Sbjct: 380  GLSGDKSSKMGSEGLINDSMPPKDPEEGGENCEGNADPESLSDIDDAEVDGYLHNEE 436


>gb|AFW78950.1| hypothetical protein ZEAMMB73_136276 [Zea mays]
          Length = 425

 Score =  360 bits (924), Expect = 1e-96
 Identities = 189/379 (49%), Positives = 250/379 (65%), Gaps = 1/379 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSG-AESQLSGNLVRYN 514
            MV+C+HC     +  D   G++CC  CG+V+D  +++ +PTF+K    +S+L+G+++   
Sbjct: 1    MVYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNKGQSRLAGSILESI 60

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
            +            GY     S +RTLD+G++EI  I  NL +S  ++IV  + R Y +A+
Sbjct: 61   E-----------SGYSM---SRQRTLDKGRDEIRQIVNNLHISGGETIVSKAFRFYELAL 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL+L +
Sbjct: 107  DRNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLQLAE 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HP++QK VDP LFIHRF   LLGR     + + + +TALRI+ SMKRDW+QTGRKPSGLC
Sbjct: 167  HPVVQKLVDPSLFIHRFTKLLLGR-----RNNDVSDTALRIVASMKRDWMQTGRKPSGLC 221

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI+ALSHG + TK++++SVVH+CEATLTKRLIEFE T+SGSLTIEEF + A E   
Sbjct: 222  GAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATADESNE 281

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E  S  SP +         E++C+HKD     HFAHGLC  CY +  K+SGGL+GGS+PP
Sbjct: 282  EPVSKHSPKSG--------EILCKHKD-KGFEHFAHGLCEKCYNKFTKLSGGLEGGSDPP 332

Query: 1415 AFQRAEKKRQEEALSKKQA 1471
            AFQRAEKKR E A   ++A
Sbjct: 333  AFQRAEKKRLEAAKRAEEA 351


>ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
            gi|145357469|ref|XP_001422941.1| predicted protein
            [Ostreococcus lucimarinus CCE9901]
            gi|144581189|gb|ABO99246.1| predicted protein
            [Ostreococcus lucimarinus CCE9901]
            gi|144583185|gb|ABP01300.1| predicted protein
            [Ostreococcus lucimarinus CCE9901]
          Length = 576

 Score =  360 bits (923), Expect = 1e-96
 Identities = 184/379 (48%), Positives = 254/379 (67%), Gaps = 6/379 (1%)
 Frame = +2

Query: 344  WCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNI-FSSDPTFIKSGAESQLSGNLVRYNQY 520
            WC  CGK    E ++ NGF CCT CG+++D+   FS+D TF+K+   + +          
Sbjct: 5    WCETCGKRVAAETNEANGFTCCTTCGKILDERAAFSADATFVKNAQGASVPDGHYVPESG 64

Query: 521  SANRSFGVSSGG--YEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
             A+     + GG  Y  + DSHERTL RGK EI+ +A  L +  R+ +V+++HRLY +AV
Sbjct: 65   VAHGVIRATRGGRLYGVQLDSHERTLYRGKLEIKQLADRLGIRPREDVVDAAHRLYKLAV 124

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR+ QVAGA +YIICRQE +P              YVLG VFLQLC +LRL Q
Sbjct: 125  QRNFTRGRRISQVAGACMYIICRQESRPYMLIDFADILQTNVYVLGGVFLQLCRLLRLEQ 184

Query: 875  HPIIQKPVDPCLFIHRFADRL-LGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGL 1051
            HP++QKP+DP LFIHRFAD+L LGR     + H++ NTALR++ SMKRDW+QTGR+P+G+
Sbjct: 185  HPLMQKPIDPSLFIHRFADKLNLGR-----RMHTVANTALRLVASMKRDWMQTGRRPNGI 239

Query: 1052 CGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELE 1231
            CGAAL+++A  HG S +K +V++VVH+ E+TL KRL EFE T S +L+IEEF+++A+  E
Sbjct: 240  CGAALWVAAQIHGFSPSKRDVVAVVHVGESTLKKRLSEFENTPSAALSIEEFDTQARTFE 299

Query: 1232 TEMQSFCSPANNQKMIESVP--ELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGS 1405
             E ++      N K + S P   L C HKD  +  HFAHG+C +CY + ++ISGG  GG+
Sbjct: 300  AEEEA----NKNTKSLASSPMSVLSCVHKDNENIPHFAHGMCRACYVDYVRISGGSVGGA 355

Query: 1406 NPPAFQRAEKKRQEEALSK 1462
            +PPAF RAE KR+ +A  K
Sbjct: 356  DPPAFMRAEAKRKIDAKQK 374


>ref|NP_001055147.1| Os05g0305100 [Oryza sativa Japonica Group]
            gi|113578698|dbj|BAF17061.1| Os05g0305100 [Oryza sativa
            Japonica Group] gi|222631042|gb|EEE63174.1| hypothetical
            protein OsJ_17983 [Oryza sativa Japonica Group]
          Length = 574

 Score =  359 bits (922), Expect = 2e-96
 Identities = 204/481 (42%), Positives = 283/481 (58%), Gaps = 9/481 (1%)
 Frame = +2

Query: 341  VWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSG-AESQLSGNLVRYNQ 517
            ++CSHC  +     D    + CC  CG+V+DD ++  +PTF K    +++L+G+++    
Sbjct: 1    MYCSHCQDNCPVVKDPDKNYTCCGLCGKVLDDQVYDGEPTFQKGADGQARLAGSILS--- 57

Query: 518  YSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAVE 697
                    + SG     + SHERT+++G+EEI  I  +L ++  D+I+  +HR Y +AV+
Sbjct: 58   -------SIESGN----SVSHERTINKGREEIRQIVSSLHVAGGDTIISMAHRYYTLAVD 106

Query: 698  RGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQH 877
            + FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL L +H
Sbjct: 107  KNFTRGRRTTHVAAACLYIACRQSKKAYLLIDFSDHLQISVYVLGAVFLQLCQVLLLAEH 166

Query: 878  PIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLCG 1057
            P+IQK +DP LFIHRF +RLLG     K+ +++ +TALRI+ SMKRDW+QTGRKPSGLCG
Sbjct: 167  PVIQKLIDPSLFIHRFTERLLG-----KRDNAVSDTALRIVASMKRDWMQTGRKPSGLCG 221

Query: 1058 AALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELETE 1237
            AALYI+ALSHG   TK+++++VVH+CEATLTKRLIEFE T+SGSLTIEEF +KA   E  
Sbjct: 222  AALYIAALSHGYDYTKADIVAVVHVCEATLTKRLIEFENTDSGSLTIEEFLAKAD--EQV 279

Query: 1238 MQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPPA 1417
            + +  SP +         E++C+HKD     HFAHGLC  CY + MK+SGGL+GGS+PPA
Sbjct: 280  LVTKISPKSG--------EVLCKHKD--KAEHFAHGLCEKCYNKFMKLSGGLEGGSDPPA 329

Query: 1418 FQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGGAKP 1597
            FQRAEK+R E A + K                + S+E+  +SV     SD++  +     
Sbjct: 330  FQRAEKQRLEAAKNAK--------------GTAASKEAALESVCEARESDVENNI----T 371

Query: 1598 VQEKSALACDIAELQEECATASKGILSSDVGNGSSDK--------EDIDEMNMKGDGENE 1753
               K+ +    + +                G G +DK         DID+  + G   NE
Sbjct: 372  TPPKNIIGDKHSTIPSVKVAGDSVATEDPEGEGKNDKADEGPESLSDIDDAEVDGYLHNE 431

Query: 1754 E 1756
            E
Sbjct: 432  E 432


>ref|XP_006354652.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Solanum
            tuberosum]
          Length = 615

 Score =  359 bits (921), Expect = 2e-96
 Identities = 215/476 (45%), Positives = 288/476 (60%), Gaps = 3/476 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWC +C +D+ T+  D+ G +CC+ CG+V++++ FS +PTF+K+ + +SQLSG+  R +
Sbjct: 1    MVWCVNCAQDKPTK--DVEGKICCSFCGKVLEEDNFSIEPTFVKNASGQSQLSGS--RVS 56

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
               +N S             S ERTL    E IE +   L +   DSI   +   Y IAV
Sbjct: 57   TIQSNYSV------------SRERTLKEAYEGIEGMLYGLGIDGGDSIARPALSFYTIAV 104

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            E+ FT+GRR +QV  A LYI CR+ +KP              YVLGAVFLQLC +L L  
Sbjct: 105  EKSFTRGRRKEQVQAACLYIACRENKKPFLLIDFSEYLRINVYVLGAVFLQLCKILHLED 164

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HPI+QKPVDP LFIHRF DRL G    RK   +I  +AL IL SMKRDW+QTGRKPSGLC
Sbjct: 165  HPIVQKPVDPSLFIHRFTDRLFGG---RKP--NISRSALHILASMKRDWMQTGRKPSGLC 219

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI++LSHG+SC+KSE+I VVHICEATLTKRLIEFE TESGSLTI+EF ++A+ELE 
Sbjct: 220  GAALYIASLSHGLSCSKSEIIKVVHICEATLTKRLIEFENTESGSLTIDEFNTRAEELEK 279

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E ++      ++     + E++CEHK  +    FAHGLC SCY + +K+SGGL GGS PP
Sbjct: 280  E-ETLALQLYSRSKGSGITEVLCEHKK-SVKLPFAHGLCESCYTDFVKLSGGLDGGSEPP 337

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQ--ESLKQSVSAQETSDLDRKLGG 1588
            +FQRAE++R    ++K+ AE            Q ++   E L+        S  +  + G
Sbjct: 338  SFQRAERER---LMAKQDAEEIAEDPSFPMSSQMVNNVGEYLEPEKEGNTQSVKNVHISG 394

Query: 1589 AKPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMNMKGDGENEE 1756
            ++ V   S    D      + + A  GI   + GN S    DID++ +     NE+
Sbjct: 395  SEQVGAFSVDKTDHI-ATPDTSHAMDGIDHDESGNFS----DIDDVEVDSYLHNEQ 445


>ref|XP_004229719.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Solanum
            lycopersicum]
          Length = 615

 Score =  356 bits (914), Expect = 2e-95
 Identities = 215/476 (45%), Positives = 284/476 (59%), Gaps = 3/476 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWC +C +D+ T+  D+ G +CC+ CG+V++++ FS +PTF+K+ + +SQLSG+  R +
Sbjct: 1    MVWCVNCAQDKPTK--DVEGKICCSFCGKVLEEDNFSIEPTFVKNASGQSQLSGS--RVS 56

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
               +N S             S ERTL    E IE +   L +   DSI   +   Y IAV
Sbjct: 57   TIQSNYSV------------SRERTLKEAYEGIEGMLYGLGIDGGDSIARPALSFYTIAV 104

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            E+ FT+GRR +QV  A LYI CR+ +KP              YVLGAVFLQLC +L L  
Sbjct: 105  EKSFTRGRRKEQVQAACLYIACRENKKPFLLIDFSEYLRINVYVLGAVFLQLCKILHLED 164

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HPI+QKPVDP LFIHRF DRL G    RK   +I  +AL IL SMKRDW+QTGRKPSGLC
Sbjct: 165  HPIVQKPVDPSLFIHRFTDRLFGG---RKP--NISRSALHILASMKRDWMQTGRKPSGLC 219

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELET 1234
            GAALYI++LSHG+SC+KSE+I VVHICEATLTKRLIEFE TESGSLTI+EF ++A+ELE 
Sbjct: 220  GAALYIASLSHGLSCSKSEIIKVVHICEATLTKRLIEFENTESGSLTIDEFNTRAEELEK 279

Query: 1235 EMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSNPP 1414
            E ++             + E++CEHK       FAHGLC SCY + +K+SGGL GGS PP
Sbjct: 280  E-ETLAMQLYPGSKGSGITEVLCEHKKTVKLP-FAHGLCESCYTDFVKLSGGLDGGSEPP 337

Query: 1415 AFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQ--ESLKQSVSAQETSDLDRKLGG 1588
            +FQRAE++R    ++K+ AE            Q  +   E L+        S  +  + G
Sbjct: 338  SFQRAERER---LMAKQDAEEIAEDPSFPMSSQMENNVGEYLEPEKEGNTQSVKNVHISG 394

Query: 1589 AKPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMNMKGDGENEE 1756
            ++ V   SA+  D     +       GI   + GN S    DID++ +     NE+
Sbjct: 395  SEQVGAFSAVKTDHVATPDTLHDMD-GIDHDESGNFS----DIDDVEVDSYLHNEQ 445


>ref|XP_004296706.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Fragaria
            vesca subsp. vesca]
          Length = 620

 Score =  355 bits (910), Expect = 4e-95
 Identities = 209/476 (43%), Positives = 280/476 (58%), Gaps = 3/476 (0%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            MVWCS C K+     D   G L C+GCG+V++D+IFS +PTF+K+ A +SQL+G  VR  
Sbjct: 1    MVWCSACVKNVEGTSDA--GRLWCSGCGKVLEDHIFSEEPTFVKNAAGQSQLAGRYVR-- 56

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
                +R   +S+        S ER L+  + E+  +   L +   + I++ + R Y IA+
Sbjct: 57   ----SRESEISA--------SRERILENAEYELRCMRNALDMGDNEEIIDIAKRFYRIAI 104

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            ER FT+GR+ +QV  A LYI CR+++KP              YVLGAVFLQLC  LRL +
Sbjct: 105  ERNFTRGRKSEQVQAACLYIACREKKKPYLLIDFSNYLKINVYVLGAVFLQLCKALRLDE 164

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQYHSICNTALRILTSMKRDWLQTGRKPSGLC 1054
            HPI+QK VDP  FIHRF + L G      +   +  TA RI+TSMKRDW+QTGRKPSG+C
Sbjct: 165  HPIVQKLVDPSWFIHRFTESLPGG-----RDKGVMQTAHRIITSMKRDWMQTGRKPSGIC 219

Query: 1055 GAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAKELE- 1231
            GAALYISALSHG+ C+KS++I +VH+C+ATLTKRL+EFE TESGSLTIEEF  KAKEL+ 
Sbjct: 220  GAALYISALSHGLKCSKSDIIKIVHVCDATLTKRLVEFENTESGSLTIEEFLLKAKELDE 279

Query: 1232 -TEMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGGSN 1408
             ++        ++     S   ++CEHKD  S   +AHGLC  CY++ M ISGGL GG+N
Sbjct: 280  ISKQPIMADKMDDTDSSPSEQRILCEHKD--SGKPYAHGLCQICYDDFMTISGGLDGGAN 337

Query: 1409 PPAFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKLGG 1588
            PPAFQRAE +R    L K  AEL            +I+ ESL  S    +    +    G
Sbjct: 338  PPAFQRAEIER----LKKTSAEL----NANDSGIDTIASESLDNSNQLSQFEKENNTKSG 389

Query: 1589 AKPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMNMKGDGENEE 1756
            +K    K  L  +           +  I + D  + S +  DID++ + G   NEE
Sbjct: 390  SK---NKGLLPTEPVSDGAAMENTADDIGTEDCDDESDNFSDIDDLEVDGYLLNEE 442


>gb|AFW80945.1| hypothetical protein ZEAMMB73_313717 [Zea mays]
            gi|413948297|gb|AFW80946.1| hypothetical protein
            ZEAMMB73_313717 [Zea mays]
          Length = 588

 Score =  355 bits (910), Expect = 4e-95
 Identities = 200/478 (41%), Positives = 278/478 (58%), Gaps = 5/478 (1%)
 Frame = +2

Query: 338  MVWCSHCGKDQRTEHDDINGFLCCTGCGRVVDDNIFSSDPTFIKSGA-ESQLSGNLVRYN 514
            M++C+HC     +  D   G++CC  CG+V+D  +++ +PTF+K    +S+L+G+++   
Sbjct: 1    MIYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNTGQSRLAGSILASI 60

Query: 515  QYSANRSFGVSSGGYEYKTDSHERTLDRGKEEIELIAGNLSLSQRDSIVESSHRLYIIAV 694
            +            GY     SH+RTLD+G++EI  I  NL +S  +++V  ++R Y +AV
Sbjct: 61   E-----------SGYSI---SHQRTLDKGRDEIRQIVNNLHVSGGETVVSKAYRFYELAV 106

Query: 695  ERGFTKGRRVKQVAGATLYIICRQEQKPXXXXXXXXXXXXXXYVLGAVFLQLCGVLRLLQ 874
            +R FT+GRR   VA A LYI CRQ +K               YVLGAVFLQLC VL L  
Sbjct: 107  DRNFTRGRRTSHVAAACLYIACRQSKKAYLLIDFSDYLQISVYVLGAVFLQLCQVLLLAD 166

Query: 875  HPIIQKPVDPCLFIHRFADRLLGRSATRKQ----YHSICNTALRILTSMKRDWLQTGRKP 1042
            HP++QK VDP LFIHRF   LLGR             + +TALRI+ SMKRDW+QTGRKP
Sbjct: 167  HPVVQKLVDPSLFIHRFTKCLLGRRDNAVSDTAFSREVSDTALRIVASMKRDWMQTGRKP 226

Query: 1043 SGLCGAALYISALSHGISCTKSEVISVVHICEATLTKRLIEFEETESGSLTIEEFESKAK 1222
            SGLCGAALYI+ALSHG + TK++++SVVH+CEATLTKRLIEFE T+SGSLTIEEF + A 
Sbjct: 227  SGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLTIEEFLATAD 286

Query: 1223 ELETEMQSFCSPANNQKMIESVPELVCEHKDLNSTSHFAHGLCHSCYEEIMKISGGLQGG 1402
            E      S  SP +         E++C+HK      HFAHGLC  C+ +  K+SGGL+GG
Sbjct: 287  EYNEASVSKYSPKSG--------EILCKHKG-KDFEHFAHGLCEKCFNKFTKLSGGLEGG 337

Query: 1403 SNPPAFQRAEKKRQEEALSKKQAELFXXXXXXXXXXQSISQESLKQSVSAQETSDLDRKL 1582
            +NPPAFQRAE KR E A   ++A              ++ + +L++S+   + S+++   
Sbjct: 338  ANPPAFQRAENKRLEAAKRAEEA-------------AAVKEAALEESLCDTQNSEIE--- 381

Query: 1583 GGAKPVQEKSALACDIAELQEECATASKGILSSDVGNGSSDKEDIDEMNMKGDGENEE 1756
                    K AL+               G  SS +G+G    + +   + +  GEN E
Sbjct: 382  ---STTTPKKALS---------------GDKSSTIGSGGLINDSVPPKDPEEGGENCE 421